Cdip013465.1
Basic Information
- Insect
- Cloeon dipterum
- Gene Symbol
- -
- Assembly
- GCA_949628265.1
- Location
- OX451262.1:28356354-28359750[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.00037 0.027 15.0 0.9 2 23 49 71 48 71 0.91 2 23 1.4 1e+02 3.7 3.1 1 19 73 91 73 94 0.89 3 23 0.00048 0.034 14.6 0.2 1 23 112 135 112 135 0.97 4 23 2.6 1.9e+02 2.9 1.4 3 19 139 155 138 158 0.90 5 23 0.011 0.8 10.3 3.8 1 23 159 182 159 182 0.96 6 23 0.017 1.2 9.7 0.1 1 20 188 207 188 208 0.96 7 23 0.00076 0.055 14.0 0.6 2 23 220 242 219 242 0.96 8 23 0.00022 0.016 15.7 1.3 1 23 246 269 246 269 0.95 9 23 0.00012 0.0088 16.5 0.1 2 23 277 299 276 299 0.97 10 23 0.19 14 6.5 4.1 3 23 307 327 305 327 0.95 11 23 9e-07 6.5e-05 23.2 1.2 1 23 333 355 333 355 0.98 12 23 3.5e-05 0.0025 18.2 0.6 1 23 361 383 361 383 0.95 13 23 0.0048 0.35 11.5 4.7 1 23 463 486 463 486 0.97 14 23 0.36 26 5.6 0.3 1 13 488 500 488 502 0.89 15 23 0.016 1.1 9.9 2.9 1 23 508 532 508 532 0.96 16 23 0.044 3.1 8.5 4.2 1 23 537 560 537 560 0.95 17 23 0.0015 0.11 13.1 3.5 3 23 574 595 574 595 0.97 18 23 0.021 1.5 9.5 0.1 3 23 601 622 600 622 0.95 19 23 0.001 0.073 13.6 0.1 1 23 631 654 631 654 0.91 20 23 1.6e-05 0.0011 19.3 1.2 3 23 662 682 660 682 0.96 21 23 1.7e-05 0.0012 19.2 1.8 1 23 688 710 688 710 0.97 22 23 1.4e-05 0.00099 19.5 1.9 1 23 716 738 716 738 0.95 23 23 0.00071 0.051 14.1 2.0 1 23 744 766 744 766 0.97
Sequence Information
- Coding Sequence
- ATGGAGCACACATTCCTGTGCGTGGCGTGCAACGTGCCGTTCATGTCCAGCCGAGACCGAGGGATACACAAATGCTTCTCCAGTTTCCAGGAAGATTACTCTCAGAACTCTAGAGGACGGAGAACGGCCCGGTCGAAGGTGCTGACGTGCGAGCAGTGCAAGAAAACGTATTCGTCTCACGCCAACTTCGTGCGACACGTCGCCGAGCCGCACACGCACCACTGCAAGGTTTGCAACATTTATTTCGCCACGCAAAGACAACGACTGGCCCACGGGTGCCGACCGGCGCCCCAGCCCGAAGGGACTCTCCCGGACGCCTCTACCAAATATAAATACCAGTGCAGCAAGTGCGCCAAGGGGTTCGTCCAAGAGACCAACTACCTCGAGCACATTGCCAAAGCGCACGACAGCTTCTGCAAGACCTGCAAACGGTACTTTATCTCCGCTCGAGACCGCATTGCACACTCGTGCCTCTACAAATGCCGCCATTGTGATTTTAGTGCGAAGACGCACACCAAACTGCAAGTGCACATCGAGAACATTCACGAGAATGGGATTGAGTTCGAGTGCGatatttgcaaagaaaaatttctgtCTAAACGAAGTCTCATCAGCCACATTGTCGCCAGCGGAATCGATCACAGTTTCATCGGCACGTACTGCAGTATTTGCAACTACGACTACCGCTCCATGTACAGCCTGAAGCTTCACATCCAGCGGGTGCACCAGGGCGTCTTTAAATGCACCGGCTGCAACACCAGTTTCGCCACAAAAGAAGAGCGCAAGGTCCACTACAAAGCGAACCACTCGCAGAAAAAGCAGGAGGTGCAGTGCCCCGAGTGCCCGAAAATCATCAGCAACATTCACAACCTCCAAATCCACATCAACATGGTGCACAGGAAACTTCGACCGCACCTTTGTCAGgtttGTGGAAAGTCGTACCCGTGCAAATCGTCTCTGCAATTCCACATGACGATGCACACCGGCGAGAAGAAGCATGTTTGCAATGTGTGCGGACACGCGTTCGCTCGAATCGAGAACCTGAAGCAGCACATGCGGATCCACAACAATGTGAAGCCATTCTTGTGCGACTTCTGTCCGCAAAAGTTCCGTCAAGCCGGATCTCTGAAGATCCATCGCAGGATTCACACAGGGGAAACGCCCTATCACTGTCACTTatttacgTGGCCGTGGAAAGGTGTAAAACTCCCTTGCGGTCGGCGCAAAAAGAAGCCTATACAACCCGAGCCACAGTCTGACGATGATCTCATGAAAATTGAAGTCATAGACGTGCGCTCACTGCCAGACTTCTCGGCAGAACCAGCTCTCCCGCCAGAAAATGTGACCGTCGAGGAATTCAACAACCCCCTAACTGCGCGAGCCGACTTCACGTGTTCCCAGTGCCACATCAAGTTCAAAAACTACGGCTCGTACACAAATCACTCGAAGAAACCTCACACATACCACTGCAAGTGGTGCAACAGGAATTTCGTCAACGCTCGAGGGGAGCACGCGTGCGCCTTCAAGTGCACCAAGTGCGAATTTCGGTATTTCAAGACCAACGGCGCCCTGAGGAGTCACACCAGGTGGTTCCACACGGGAGACGAGTTTCTCTGCCACGACTGCGGAGCCAAATGCCCAACCAAATTGAGCATGCGCACTCACTACAAGAAGGTTCACATCAAAAAGCAGAGTGAAGACCAAAGTTACAAGACTTGGTGCTCCGAGTGTCAGCGGAGTTTTTCCTCTACCTTTTCCCTGATGAAACACAAACAACGAAAGCACGAGGGCAAGATTCTCTGCTCCGTCTGCCCGGAGGCCTTTGCCTCGAAAGAGGAGCGCAGGGAGCACGTGAAGCTGGTGCACCCGTCGACCAGAGAGAAGCAGCTGTTTGACTGTCCAGAGTGCGGCAAGAAATTGAGTTCCAGAGCCATGATGCAGGTTCACGTCGACAACATCCACAAGAAACTTAAACCCCACCTCTGTcagGTTTGTGGAAAAGCATTTGCGGTTGTGTCTCACCTCAAATTGCACATGATGATGCACACCGGAGAAAAGAAGCATGTTTGCAAAGTGTGCGGGCACGCGTTCGCCCGCATCGAAAATCTAACTCAGCACAAGAGGATCCACGAAGACTTGAAGCCTTTCCTCTGCGACTTCTGCCCCATGAAGTTCCGGCAGCAGAGCTCGTTGAAGAGCCACAGGCGCATTCACACAGGAGAAACGCCGTACAAGTGCCAATTGTGCCCTTCCAGCTTCCGAAGCAAACAGCAGCTCGATAACCATGTCAAGTTCCATccatcttaa
- Protein Sequence
- MEHTFLCVACNVPFMSSRDRGIHKCFSSFQEDYSQNSRGRRTARSKVLTCEQCKKTYSSHANFVRHVAEPHTHHCKVCNIYFATQRQRLAHGCRPAPQPEGTLPDASTKYKYQCSKCAKGFVQETNYLEHIAKAHDSFCKTCKRYFISARDRIAHSCLYKCRHCDFSAKTHTKLQVHIENIHENGIEFECDICKEKFLSKRSLISHIVASGIDHSFIGTYCSICNYDYRSMYSLKLHIQRVHQGVFKCTGCNTSFATKEERKVHYKANHSQKKQEVQCPECPKIISNIHNLQIHINMVHRKLRPHLCQVCGKSYPCKSSLQFHMTMHTGEKKHVCNVCGHAFARIENLKQHMRIHNNVKPFLCDFCPQKFRQAGSLKIHRRIHTGETPYHCHLFTWPWKGVKLPCGRRKKKPIQPEPQSDDDLMKIEVIDVRSLPDFSAEPALPPENVTVEEFNNPLTARADFTCSQCHIKFKNYGSYTNHSKKPHTYHCKWCNRNFVNARGEHACAFKCTKCEFRYFKTNGALRSHTRWFHTGDEFLCHDCGAKCPTKLSMRTHYKKVHIKKQSEDQSYKTWCSECQRSFSSTFSLMKHKQRKHEGKILCSVCPEAFASKEERREHVKLVHPSTREKQLFDCPECGKKLSSRAMMQVHVDNIHKKLKPHLCQVCGKAFAVVSHLKLHMMMHTGEKKHVCKVCGHAFARIENLTQHKRIHEDLKPFLCDFCPMKFRQQSSLKSHRRIHTGETPYKCQLCPSSFRSKQQLDNHVKFHPS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -