Cdip016959.1
Basic Information
- Insect
- Cloeon dipterum
- Gene Symbol
- -
- Assembly
- GCA_949628265.1
- Location
- OX451263.1:29281617-29283021[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 5.7 4.1e+02 1.8 0.0 8 21 27 40 26 41 0.85 2 13 0.0023 0.16 12.5 0.5 3 23 97 118 95 118 0.93 3 13 5.3e-06 0.00038 20.8 0.2 1 23 123 145 123 145 0.98 4 13 3.6e-07 2.6e-05 24.5 0.8 1 23 151 173 151 173 0.98 5 13 3.2e-05 0.0023 18.3 5.0 1 23 179 201 179 201 0.97 6 13 7.8e-08 5.6e-06 26.6 0.8 1 23 205 227 205 227 0.98 7 13 0.0001 0.0072 16.8 6.2 1 23 233 255 233 255 0.98 8 13 3.1e-06 0.00022 21.6 1.5 1 23 262 284 262 284 0.95 9 13 4.6e-06 0.00033 21.0 1.3 3 23 310 330 308 330 0.96 10 13 3.2e-05 0.0023 18.3 1.6 1 23 336 358 336 358 0.96 11 13 2.1e-07 1.5e-05 25.2 2.3 1 23 364 387 364 387 0.97 12 13 0.00055 0.04 14.4 0.5 1 23 399 421 399 421 0.93 13 13 1.3e-07 9.4e-06 25.9 1.3 1 23 427 450 427 450 0.97
Sequence Information
- Coding Sequence
- ATGGATGAGGCTGCTGCTCCCGGAAAGGCTAACAAGGGAAAGGAGGAAGAGCCGAAAATGAGGTCTGGAAAGAGCAACATGGCCTTCCCAGACAAAGATCTGCTTGAACAACATGTGGCTACTGAAGAGGCCAAGAAAGGAAAGCAGCAGAAATTAATTCCTGGGCAGGAGCAGCTGATCACTGCCCCTGGTGGCACAAGGCTGTTCGTTTGTCTAAAACGATCAGTTGCTTCCCCTGAGGCTATGGAAGATGCTGATGTTGTATATTATGGCCAAAGGCTGTTCGGTTGTCAACAGTGCAACATGGAATTCCCAAACAACCGTCTGCTTAGACAACATCTTCTGGATTCTCACAAACTTTCTAAGTATATCTGTGACATTTGCGGTGCGGTATTCAACTACAAATCAAGCCTGGGGAGGCACAAGAAGGTTCACAACTCTGAGTGGCCGTTCATCTGTTCGGATTGCAGTAAGGGATTCAACTACAAATCAAGCTTGGTCAGACACATGAATGTTCACAACCCTGCGTGGCCGTTCGCCTGTTCGGATTGCAATAAGagatttaaatacaaaacatgCTTGGACAGACACATGAAGGAGCACAACCCTGAGTTCGTCTGTTCGGATTGCAATAAGGGATTCAACTACAAATCAAGCTTGGTCAGACACATGAATGTTCACTACCCTGCGTGGCTGTTCGTCTGTTCGGATTGCAATAAGAGATTCAAATACAAAACATGCTTCGACAGACACATGAAGGAGCACAACACTGGGCGGCCTGAGCACGTCTGTTCAAAATGCGGCAAAGCCTTCAAAAGAAATTACGCCTTGCGTATACACTCAAGCATCCACACAACCGCCGAGAGAAATGAGTTGGAAAAGAAGCTAAAGCAAAATCTGAGTTCTTATGAAATCGAGTCATCAATCTGTGAAACTTGCGGCAAAAGATTCGAGTACAAATCACAATTGAATCAGCACAAGATGTCCCATAGCTTTGAGCGGCCGTTCATGTGTTTGGTGTGCAATAAGGGATTTAAGCACCGTGTCACCCTGAATCGGCACTTAGTCATTCACTCAGGTGAGAAGAAGCATGTCTGTCCAGTATGCGGCAAGGGCTTTAGCCGAAACGAACACATGCGCCGACACATAAGCACCCAGCACTCCACCAAGAATGGCGATGAACCTGAGCGGCCGTTCAACTGTTTGGTGTGCAAAAAGGGATTTAAGCTTAGTGACGCCCTGAAGAGGCACTCAGTCATTCACTCAGGTGAGAAGAAGCATGTCTGTCCTGAATGTGGCAAGGCCTTCACCCGAAAAGAAAGCATGGTCAAACATTTACGCAAGAGTCACCCGtaa
- Protein Sequence
- MDEAAAPGKANKGKEEEPKMRSGKSNMAFPDKDLLEQHVATEEAKKGKQQKLIPGQEQLITAPGGTRLFVCLKRSVASPEAMEDADVVYYGQRLFGCQQCNMEFPNNRLLRQHLLDSHKLSKYICDICGAVFNYKSSLGRHKKVHNSEWPFICSDCSKGFNYKSSLVRHMNVHNPAWPFACSDCNKRFKYKTCLDRHMKEHNPEFVCSDCNKGFNYKSSLVRHMNVHYPAWLFVCSDCNKRFKYKTCFDRHMKEHNTGRPEHVCSKCGKAFKRNYALRIHSSIHTTAERNELEKKLKQNLSSYEIESSICETCGKRFEYKSQLNQHKMSHSFERPFMCLVCNKGFKHRVTLNRHLVIHSGEKKHVCPVCGKGFSRNEHMRRHISTQHSTKNGDEPERPFNCLVCKKGFKLSDALKRHSVIHSGEKKHVCPECGKAFTRKESMVKHLRKSHP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -