Cdip011219.1
Basic Information
- Insect
- Cloeon dipterum
- Gene Symbol
- -
- Assembly
- GCA_949628265.1
- Location
- OX451262.1:2173022-2181066[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 33 0.035 2.5 8.8 0.2 2 23 21 43 20 43 0.92 2 33 0.00067 0.048 14.2 0.7 2 23 145 167 145 167 0.94 3 33 0.011 0.77 10.4 7.7 2 23 175 197 174 197 0.96 4 33 0.0032 0.23 12.0 0.6 1 23 203 225 203 225 0.94 5 33 9.3e-05 0.0067 16.9 0.3 2 23 231 253 230 253 0.95 6 33 0.067 4.8 7.9 0.1 2 12 260 270 259 281 0.85 7 33 0.17 13 6.6 0.3 1 23 290 312 290 312 0.91 8 33 0.00019 0.014 15.9 0.6 1 23 318 340 318 340 0.98 9 33 2.7e-05 0.002 18.6 4.0 1 23 346 368 346 368 0.98 10 33 0.14 10 6.9 2.7 1 23 374 397 374 397 0.94 11 33 0.5 36 5.1 0.2 1 23 413 436 413 436 0.97 12 33 0.019 1.4 9.6 0.4 2 21 441 460 440 461 0.93 13 33 0.27 19 6.0 0.9 2 21 506 528 505 531 0.68 14 33 7.2e-07 5.2e-05 23.5 0.8 1 23 537 559 537 559 0.97 15 33 0.0013 0.09 13.3 0.0 2 23 565 587 564 587 0.95 16 33 0.00081 0.058 13.9 1.1 2 23 608 630 607 630 0.96 17 33 0.00016 0.011 16.1 0.7 2 23 638 660 637 660 0.94 18 33 0.033 2.4 8.8 0.6 1 23 666 688 666 688 0.91 19 33 0.11 8 7.2 0.4 1 23 693 716 693 716 0.95 20 33 0.0057 0.41 11.3 0.6 2 23 723 744 722 744 0.85 21 33 0.0007 0.05 14.1 1.1 1 23 753 775 753 775 0.97 22 33 0.0015 0.11 13.0 2.5 1 23 781 803 781 803 0.97 23 33 4.3e-07 3.1e-05 24.2 1.0 1 23 809 831 809 831 0.99 24 33 0.53 38 5.1 0.5 1 13 837 849 837 851 0.89 25 33 0.0009 0.064 13.8 0.5 1 23 924 947 924 947 0.96 26 33 3e-05 0.0022 18.4 2.5 1 23 952 974 952 974 0.98 27 33 0.00053 0.038 14.5 0.2 1 23 980 1002 980 1002 0.98 28 33 4.6e-05 0.0033 17.8 1.9 1 23 1009 1031 1009 1031 0.99 29 33 2.7e-05 0.0019 18.6 0.6 2 23 1039 1060 1038 1060 0.97 30 33 0.00019 0.014 15.9 1.0 2 23 1067 1088 1066 1088 0.95 31 33 0.0011 0.076 13.6 2.2 1 23 1095 1117 1095 1117 0.97 32 33 0.0009 0.065 13.8 2.9 1 20 1123 1142 1123 1146 0.95 33 33 0.007 0.5 11.0 0.2 1 23 1151 1174 1151 1174 0.91
Sequence Information
- Coding Sequence
- ATGTTTGCGACCGCTGAATCTCTTCCGATCCACATCGAGATGCAGCATCCGAAAAATATGCAGTGCGAGTTGTGTGCTATGAGATTCCGTTCAAGTGCCACCTTGGACCTGCATATGGTTCTAACACACTCAAGTGAGCCAGCCACGACTCCGAGACCGAAAACAGCGTGCCTACCGAGTGGCTCTGGTGGCAGCAATACACCAAGTCAGAAGGCTCAAAAGCCAATTACAACTTTGGCCAAAACTAAAGATTGTGGTAGCGAGAAAAGCGGAGTCGTCGTGAAGCATGGAACCGTCACTATGAATCAAAGTGGGATGGGCAAGAATGTTGTGATTAGCTTAAACAATAGTGCTGAGAAAGATGCGAAAATTGTAAACAGTAGTGCTAAGGAAGACGCGAAGCAACTAAAACCGTACCGCGCAATCCCAGCGTCTTGCGAGATTTGCAAGCAAGTCTTCCCCTCGAAAACAGGCATGCGGAAGCACATGTCggaaaaacacaatttgcGCGCCGAGATCTGCAAGTGCCGGCTGTGCGACAAAAGCTACATCGGCCGTTGTGGACTGAACCACCACATGAGGACAAAACACTCGAACGAAAAGCCCTACATGTGCTCCTTCTGCGGAAAGTCGTTTCAAACTGGCAACCAATTATCGCTTCACGAGGCGAACCACGCCGAGAAAACAATCGAGTGCGACGTGTGCGACAAAAAGTTTCCCAGCAAAATGGCTCTGCGGTCTCACAAACAAAGTGTGCACGGCCCGTTTAAATACATCCAGTGCGAAATTTGCGGCAAGACTTACAAAACGATCGACATCGCGTCGCACAAAAGAGCCGTGCACATAGACGATTCGAAAAAATACGTGCACGAGTGCGTGATTTGCGGCAAAAAATATGCGGGGGTCGGCGGTCTGAAATTCCACTTGCTCAGACACGAAAACGCGCTGAGATTCGAGTGCGATATATGCAGCAAACGCTACAATACTAAAAACTCGATCCAGTCGCACATTTTGATCCACCTGGACGACCGCAAACACAAGTGCAATCTGTGCGACAAGGCATTCGTAATGAATCACATGTTGAAATCACACATGCTCACTCACACCCAAGAAAAAAGATTTGCTTGCGAAGTCTGCGGCCAAAGGTTCAGGTGGAAGCACGACCGAGACAAGCACCAGAACCGGAAACATTCCATTCCAATCCCTAAgctgGAACCCCCATGTAAATTGCTGCTATACCAGTGCGTGTTTTGCAATACGCTGCTCGCATCCAGCGAGCTGGTGCGGACCCACATTGAGAAGCTGCACCCTAAAACCATCAAGTGCAGTTTCTGCGATGCCAAGTTCCGCTCCGAATCTTTTCTGGCCGAGCACTTGCACGTTTGCGAAAAGAACAGGTCTGAACAGCCGCGGCCAGGCGTGCCTCTGCTCTTGATCGTCGAGCCACCCCGCGAGGAACCGCCGCCAGCCACGAAGCCAGTTATCAAATGTTCTATTGATGGGGAGGAAATCAGCCAGTGCGAGATCTGCAATAAAGCTTTCGCTGGAAAGGACCGAATTAACAACCTCAAGGATCACATGATCAATGTACACGAATTCGATAGGCCTTTCAAGTGCTCCATTTGCGGCAAGAGCTACAGGAGCAAATACGCTCTCAAACTTCACATCGAGCTGCACCAGGAGAAGACCATTCCTTGCGACATATGTGGCAAGAAATACGTCAATGATTTGACTCTCAGGGCTCACGTCAGGCTTGTACACGGCCCCCAGAAATACGTCAACTACGGGAGACAATTGAAGCCATGCCAGCCGGTTCCATCCTCTTGCGGCATTTGCAAGCAGATATTCGCCTCGAAAACTCTCATGCGGCAGCACATGAAGTCAAAGCACAATCTGAGAGCTGAAATCTGCACTTGCCAAATCTGCGGCAAGGCGTTCATCGGCCGCAACGGGCTCACCGCGCACACGAGGGCGAAACACAGCGACGATAAACCCTTCATGTGCTCGTTCTGCGGCAAGTCTTTCCTAACCGAACTCCAACTATCGCAGCACGAGGCCAACCACGGCGAGAAAAAGTTTAATTGCGTGTCGTGCGAACGGAGTTATGCGAGTACTCTGGCGCTTAAAAATCATACACTGAAAATTCACGGACCTTTTAAGTACGTGAAGTGCGAGATCTGCGGCAAAACGTTCAAATCGACTGAAATCGCGACGCATAAAAAGAGGGTGCACATAGACGACGCCTTAAAATACGTTCACGAGTGTCtcatttgctttaaaaaatactcgTCGGCAGGCGTGCTGCGGAATCACATGCTCAGCCACGAAAACGCCCAGAGATTTGAATGCGACTTTTGTTCCAAGAGatttaacacaaaaaacactttaaaattccACATGATCATTCACTTAGACGATCGCAAGTTCAAGTGCGAGCTCTGCGATAAGAGCTTTGTATTTCGCTCATCTTTGGCCCAGCACATGCTCACTCACACCAAGGAAAAGCGGTTTGCGTGCGAGGTGTGCGGTCAGAGATACAGACAAAAGAGGAAACGGGGCCGGCCGCGCGGAGCTCGGAGCGCTCTGCGCGAGCGCTGCGACATCTGCGGCACGCGGTGCGCGTGCCAGGCGCGGCACGTGCGTTCGGCCCACCCTGACGCGCGGTACTTGGAGTGCGAGGCGTGCGGCGAGCGGCGCTGGTCGAGGACCGGCATGCGGCGCCACTGGCTGTCGCAGCACGGCGGCCGCGACGTCGACGGCGCCGGCGGCCACGAGTGCAGCGTGTGCGGCCAGCAGTTCGCCACCTACAGCAGCCGGCGCTGGCACCAGATCGTGGCGCACGAGCCGGAACGCTTCCGCTGCAACTTCTGCTCGCAGACGTTCAAGCGCGCCGAGACGCTGCGCGTGCACGAGCGGCGCCACACGGGCGAGCGGCCGTTCGTGTGCGCCCAGTGCGGCGGCCAGTTCATCTCGAGCGCCACGCTGCGCTACCACCTCAAGACGCACGAGCCGCAGGCCGAGAGCTTCACGTGCGAGGTGTGCGGCAAGAGCTTCGCGTTCGGCCACTACCTGGCGCAGCACCGCAAGACGCACTTCGCCGAGGCGCGCAAGGTGCGCTGCGGCGTCTGCGGCTGGGTCACCTACAGCCGCTCGCACCTCAAGAACCACATGGTGACGCACACGGGCGAGCGGCCGCTCACGTGCGAGCTGTGCGGCAAGACGTTCGCGCACGGCTCCGGCCTGCGCAGCCACCGCGTCAAGCACAGCGCCGACAAGCGGCCGCACAAGTGCAACTACTGCGGCAAGGCCTACACGTCCGGCTTCATCCTGCGCAGGCACATCAAGCTGCACCAGGGCCTGCGCCCCTTCGAGTGCCACGTGTGCAACGCGGCCTTCACGCAGCGCGAGTGCCTCCGCAAGCACCAGTGGGTCAAGCACAAACTGATGCCGTACAAGTGCGACGAGTGCGACGCTACTTTTATGCTTATGAACGAGCTCAAAAAGCACAGGGTCGAGGTGCACTTCCGTCTTTCCCAGGACGGGCTCTCTGACTGA
- Protein Sequence
- MFATAESLPIHIEMQHPKNMQCELCAMRFRSSATLDLHMVLTHSSEPATTPRPKTACLPSGSGGSNTPSQKAQKPITTLAKTKDCGSEKSGVVVKHGTVTMNQSGMGKNVVISLNNSAEKDAKIVNSSAKEDAKQLKPYRAIPASCEICKQVFPSKTGMRKHMSEKHNLRAEICKCRLCDKSYIGRCGLNHHMRTKHSNEKPYMCSFCGKSFQTGNQLSLHEANHAEKTIECDVCDKKFPSKMALRSHKQSVHGPFKYIQCEICGKTYKTIDIASHKRAVHIDDSKKYVHECVICGKKYAGVGGLKFHLLRHENALRFECDICSKRYNTKNSIQSHILIHLDDRKHKCNLCDKAFVMNHMLKSHMLTHTQEKRFACEVCGQRFRWKHDRDKHQNRKHSIPIPKLEPPCKLLLYQCVFCNTLLASSELVRTHIEKLHPKTIKCSFCDAKFRSESFLAEHLHVCEKNRSEQPRPGVPLLLIVEPPREEPPPATKPVIKCSIDGEEISQCEICNKAFAGKDRINNLKDHMINVHEFDRPFKCSICGKSYRSKYALKLHIELHQEKTIPCDICGKKYVNDLTLRAHVRLVHGPQKYVNYGRQLKPCQPVPSSCGICKQIFASKTLMRQHMKSKHNLRAEICTCQICGKAFIGRNGLTAHTRAKHSDDKPFMCSFCGKSFLTELQLSQHEANHGEKKFNCVSCERSYASTLALKNHTLKIHGPFKYVKCEICGKTFKSTEIATHKKRVHIDDALKYVHECLICFKKYSSAGVLRNHMLSHENAQRFECDFCSKRFNTKNTLKFHMIIHLDDRKFKCELCDKSFVFRSSLAQHMLTHTKEKRFACEVCGQRYRQKRKRGRPRGARSALRERCDICGTRCACQARHVRSAHPDARYLECEACGERRWSRTGMRRHWLSQHGGRDVDGAGGHECSVCGQQFATYSSRRWHQIVAHEPERFRCNFCSQTFKRAETLRVHERRHTGERPFVCAQCGGQFISSATLRYHLKTHEPQAESFTCEVCGKSFAFGHYLAQHRKTHFAEARKVRCGVCGWVTYSRSHLKNHMVTHTGERPLTCELCGKTFAHGSGLRSHRVKHSADKRPHKCNYCGKAYTSGFILRRHIKLHQGLRPFECHVCNAAFTQRECLRKHQWVKHKLMPYKCDECDATFMLMNELKKHRVEVHFRLSQDGLSD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -