Cdip011229.1
Basic Information
- Insect
- Cloeon dipterum
- Gene Symbol
- SALL3
- Assembly
- GCA_949628265.1
- Location
- OX451262.1:2205362-2210876[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 31 0.34 25 5.7 0.7 1 23 26 49 26 49 0.96 2 31 1.8e-06 0.00013 22.3 2.3 1 23 61 83 61 83 0.97 3 31 1.2e-05 0.00087 19.7 3.2 1 23 89 111 89 111 0.96 4 31 0.00062 0.045 14.3 3.8 1 23 118 140 118 140 0.97 5 31 0.00026 0.019 15.5 1.0 2 23 148 169 148 169 0.98 6 31 3.7e-05 0.0027 18.1 0.8 2 23 176 198 175 198 0.95 7 31 1.9e-07 1.3e-05 25.4 0.6 2 23 204 225 203 225 0.98 8 31 0.0059 0.43 11.2 0.3 1 20 231 250 231 250 0.96 9 31 0.0019 0.14 12.8 0.9 1 23 259 282 259 282 0.97 10 31 0.12 8.7 7.1 1.2 2 23 297 319 296 319 0.94 11 31 0.0036 0.26 11.9 5.0 1 23 333 355 333 355 0.97 12 31 3.6 2.6e+02 2.4 7.8 1 23 399 421 399 421 0.97 13 31 0.0039 0.28 11.8 5.5 1 23 426 449 426 449 0.98 14 31 0.00014 0.0098 16.4 0.3 2 23 456 477 455 477 0.97 15 31 0.00018 0.013 16.0 0.2 1 23 483 505 483 505 0.96 16 31 1.1e-06 8e-05 22.9 0.3 1 23 512 534 512 534 0.97 17 31 0.029 2.1 9.0 1.7 3 23 543 563 542 563 0.97 18 31 0.0002 0.014 15.8 2.8 2 23 570 592 569 592 0.94 19 31 7.4e-08 5.3e-06 26.6 1.0 2 23 598 619 597 619 0.98 20 31 0.00071 0.051 14.1 0.1 1 20 625 644 625 646 0.96 21 31 0.018 1.3 9.7 4.3 1 23 653 676 653 676 0.98 22 31 0.72 52 4.6 0.1 2 10 690 698 689 705 0.88 23 31 3.7e-06 0.00027 21.3 1.3 1 23 774 797 774 797 0.96 24 31 0.089 6.4 7.5 1.4 2 23 805 826 805 826 0.97 25 31 0.012 0.83 10.3 0.1 1 23 832 854 832 854 0.97 26 31 9.1e-06 0.00066 20.1 3.7 1 23 861 883 861 883 0.98 27 31 0.0011 0.082 13.5 1.3 2 23 891 912 891 912 0.98 28 31 0.0002 0.014 15.9 2.3 2 23 919 941 918 941 0.96 29 31 1.9e-05 0.0014 19.0 1.2 3 23 950 970 948 970 0.94 30 31 0.00011 0.008 16.6 0.5 1 20 976 995 976 997 0.96 31 31 0.00074 0.053 14.0 3.0 1 23 1004 1027 1004 1027 0.92
Sequence Information
- Coding Sequence
- ATGCAACGTATCAGCACCAATAATAATGTGAGGACCGTCCTGCAAACGGACGCGAAAAAACGATTGAAAGTCTTCTACCAATGCGCGCATTGCCTGTTCCGCCTTCCATCTTTCTCCTTGGTGCGCGCCCACATGGTCAAGGAGCACAAAGAAAGGCCATTCAACAACGTGGAACAGGAGCATCCATGCACCGATTGCGATCGCAAGTTCAGCACCAAGACAAAGCTGGAGGTCCACATGCGCGACCACACCGGTGATAAACCCTTTCTCTGCACCACCTGCGCCaaatctttcaaaacaaaaaagctgCTGACAAGTCACATGAAGACGCATGAGGAGCGCGTCAAGTCGTTTACGTGCGAAGTGTGCGGGAAGCTTTTTCACCAATATCATAACCTGATGAATCACAGGGACATCCACTTTCCGGAGTCTCGCACGGAGAAGTGCGAAGTCTGCGACTTCAGTACCTACAGCAAAACCGGACTGAAAAATCACATGCTGACGCACACCAGGGAGAAGACGGTGAGCTGCAAAGAATGCGGACAAAGCTTCGTTCGTACTTCTTCTCTTTATATGCACATTAAACAGAAACACCTACCCCCGTCAAGCCAGTGCACCGTCTGTGGAAAGACCTTCGGGCAAGCCTTCAACCTGCGGAGGCACATGGCGACCCACACAGGCTTTAGGGAATATGAATGTGACATTTGCCACAAATTAAGCACGCAAAAATCCGAACTGATCGGACACCAGTGGGGTAAGCACAAGGTTCTGCCGTACAAATGTGGCGAGTGCGACGAGCAGTTTCATCTGAATGTCGAGCTGAAGCAGCACAAGATCACCGTGCATCTCAAGAGACAGGTCAATGCAATCCCTGACAGGGTACCTGTCCCCTGCCAGGAATGTGACAGGAGTTTCCTCCACGAAAGGAGCCTCAAGTTTCACATGCTCAAGGCGCACAACATGGGGGCCAAGGTTAATCGCACCCGAGATAAGCAGTACATTTGCGACATGTGCAATCAGAGCTGCATGTCCAAATTCCACTTGATGAAGCACATTGACAAGCACCTGCGCATGCAggcaaaatATAACTTCCACCACTTGCCTAAACACAGCAGTCTCATCAAAGTCAAGCACAAGGAGCAAAATGACATGTGGAAGTATCTTGCCTGTGACACGCAGCTGGAAGTGCCAACCTTCCAGTGCCACTTTTGCTGCGAATGGTTCAAACGGAAGAACACCTTTGAAAAGCACATGCAGGATCACCTGAAGGTTCTCTTTAAGTGCCACATTTGCCATGCTGGATTTTCCTTTCGCGGCTACCTGCACGGCCACCTGCGCAGGGAGCACCAGCTGCTCAACCAGATACCGTGCACTATGTGCAGCCGCAAATTCCAAAGCAAAGCCGCGCTGGAAATCCACCTGCGCAGCCACACCGGCGAGAGACCTTTTATCTGTCCCACCTGCGGAAAAGGGTACATCTCCTTTTACACGCTGAAGGAGCACCAGGTGATCCACAGGGAACGCGTCAATTCGTTCATCTGTGAGGTGTGCGGCAAGGGATTTGCCAAGAACTCGCAACTGCTGCGTCACAgaaaaattcacttcaaggaggCCCGCACGGAAAATTGCGAGATCTGCGGCTGGAAAACCTACTGCAAAACTCTGCTGAAAAGGCACATTGCCACGCACACGGGGGAGAAGACGAAGACTTGCGACGAGTGCGGAAAAAGTTTCGGTCAACAAACCAGTCTCACTTTGCACAAGATGCACAAACACAATCCACCGTCGAGCAAATGCAACATCTGCGGAAAGGCCTTTGCCCATGCGTTCAACCTACAGCGACACATGGCGACCCACACGGGCGCCAGGGACTTCGCTTGCGATATTTGTGGAGATAAATTCTCGCAGAAATCCACCCTGATCCAACACCAGTGGCTGAAGCACAATAATCTGCCGTACAAGTGTTGCGAGTGCGACGAGCAGTTCCAGCTGAATTTCGAGCTGAAACATCACACGATCACAGTTCATCGCAACAAACAAATCGccttccctgacaaaaaaccCATCCCCTGCAAAGACTGCGACAGGAGTTTCCTCCACGAGATAAGCCTGAAGGAGAAACGGAAGCGCGACGAGAAGGCGGTGCGGTGCGACGTCTGCCGAGCGAAGCACGCCAACGCGGGCTGTTTGGCGCGGCACATGCTGTGCGAGCACCGCGAGTTCAGCAAGCTCAAGTGCGAGCAGTGCGGCAAGCGGCTGTGGTGCAGGGGCCACATGCGGCGCCACTGGCGGGCGCACCTGCAGGTGCTCGTGTACAGCCACCCGTGCAGCGAGTGTCCGAAGGCGTTCAAGCGGCTGCGCAGCCTGCGGCAGCACATCAAGGTGTCGCACCCGGACAAGGCGGAGCCGCGCCGCTGCCGCTTCTGCCTGCTGGCGTTCAGCAGCACCGACAAGCTCGAGTACCACGAGCGCAAGCACACCGGCGAGCGGCCGTTCGTGTGCGCCACCTGCGGCAACGCCTACATCTCGGACTACGCGCTCAAGCAGCACGAGCGGCTGCACGACCCTCCCGAGGACGCGTTCACCTGCGAGATCTGCGGCAAGTGCTTCGCCTTCCGCAACTACCTCACGCAGCACCGCAAGATCCACTTCGCGGAGGCGCGCACCGAGAAGTGCCACCTGTGCGGCTGGAGCACCTACAGCCGCGCCGTGCTCAAGAACCACCTGCTGACGCACTCGGGCGAGAAGAACGTGACCTGCGAGCAGTGCGGCCGGTCGTTCGCGCACAAGGCGCTGCTGCACGACCACCGGCTGCGCATGCACAGCGACACCAAGCCCAGCCACCTGTGCACCTACTGCGGCAAGACGTTCGCCACCGGCACCAGCCTGCGCAGGCACATCGCCCTCCACCAGGGGCTGCGCCCGCACGAGTGCACCCTCTGCGGCACCACCTTCGCGCAGCGCTACACCCTCAGGACGCACCAGTGGCTCGTGCACAAGGTGCTGCCCTACAAGTGTGACAAGTGCGACCAGTCGTTCAAGCTCAAAAACGAGATGCAGCGGCACAGGGTGCACGCGCACCTCACCGCCGCCGACAAGGGCGACGACACAGACTCGCAGCCAAACTGA
- Protein Sequence
- MQRISTNNNVRTVLQTDAKKRLKVFYQCAHCLFRLPSFSLVRAHMVKEHKERPFNNVEQEHPCTDCDRKFSTKTKLEVHMRDHTGDKPFLCTTCAKSFKTKKLLTSHMKTHEERVKSFTCEVCGKLFHQYHNLMNHRDIHFPESRTEKCEVCDFSTYSKTGLKNHMLTHTREKTVSCKECGQSFVRTSSLYMHIKQKHLPPSSQCTVCGKTFGQAFNLRRHMATHTGFREYECDICHKLSTQKSELIGHQWGKHKVLPYKCGECDEQFHLNVELKQHKITVHLKRQVNAIPDRVPVPCQECDRSFLHERSLKFHMLKAHNMGAKVNRTRDKQYICDMCNQSCMSKFHLMKHIDKHLRMQAKYNFHHLPKHSSLIKVKHKEQNDMWKYLACDTQLEVPTFQCHFCCEWFKRKNTFEKHMQDHLKVLFKCHICHAGFSFRGYLHGHLRREHQLLNQIPCTMCSRKFQSKAALEIHLRSHTGERPFICPTCGKGYISFYTLKEHQVIHRERVNSFICEVCGKGFAKNSQLLRHRKIHFKEARTENCEICGWKTYCKTLLKRHIATHTGEKTKTCDECGKSFGQQTSLTLHKMHKHNPPSSKCNICGKAFAHAFNLQRHMATHTGARDFACDICGDKFSQKSTLIQHQWLKHNNLPYKCCECDEQFQLNFELKHHTITVHRNKQIAFPDKKPIPCKDCDRSFLHEISLKEKRKRDEKAVRCDVCRAKHANAGCLARHMLCEHREFSKLKCEQCGKRLWCRGHMRRHWRAHLQVLVYSHPCSECPKAFKRLRSLRQHIKVSHPDKAEPRRCRFCLLAFSSTDKLEYHERKHTGERPFVCATCGNAYISDYALKQHERLHDPPEDAFTCEICGKCFAFRNYLTQHRKIHFAEARTEKCHLCGWSTYSRAVLKNHLLTHSGEKNVTCEQCGRSFAHKALLHDHRLRMHSDTKPSHLCTYCGKTFATGTSLRRHIALHQGLRPHECTLCGTTFAQRYTLRTHQWLVHKVLPYKCDKCDQSFKLKNEMQRHRVHAHLTAADKGDDTDSQPN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -