Cdip011136.1
Basic Information
- Insect
- Cloeon dipterum
- Gene Symbol
- C03F11.2
- Assembly
- GCA_949628265.1
- Location
- OX451262.1:1491297-1493776[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.5e-10 1.6e-06 27.8 0.0 3 40 59 96 57 100 0.91 2 2 4.9 9.1e+03 -3.5 0.0 35 44 157 166 154 166 0.84
Sequence Information
- Coding Sequence
- ATGGAAATCAAAGAACATCCTGAGAATGACGAAACTGATGAGAGCCAGGAAAAATTCAAGCCgCCTGGTGGAGAGCCAATGCAAGAGGATTTTGTGCCAGTTCTCAATGCAGATGAAaataagGTTGTCACTAAGAAGAAGCAAAGAAATCTGAAGTTAAAAACCTATACCACTGCTGATTTGAATAAGGCATTGGTCTGCATTGCCAACAAGGGCTGGAGCTACCGTTTGGCAGCAAAAAAGTTTGGTATTCCTTACCAAACCTTGTACAAAAGACTGAAGATGAAACAACCCAGAGGACCAGCCCCTCAAATGCCTGCTAAAGTCGAAGAAAAGCTCGTGAGATTTCTTCTTGCTGATCCCAAAAGGACAGTCGGCGAGGCTTGCGAAGCCACAAAGCACGCGCTGGACCTGCTCGGCATTAAAACTTCTTTCACTGACAACCAACCATCAAAGTCCTGGTTCACCCGCTTTGTGAAGAGGCATCCTGAGGTCAAATTTGCATCGACCACTGCCAGGCAAGTGGATTTCCATAAAAACCGtctgatgaaaaattatttgagAGAAGAGAACGTTGACTGGCTTCTTGATTTCCCATTACCCTTggagctgacaatgagtacaGGCAGCAAAGCAAAGGAACAGAAAACTAAACCACCAGCAGATCCTTGGTTCCTGGGCCCGAGTCAACTGTTGCTGAAAGAACGGCAAGAAAAGCTGGAGGAAGACAAGGCGCAGAATGTGTCCGCGGAACCAAGTGGATTCCCGAGAGTCAAGGTGCTCAACGTTGGCTACTCCAGGGTGACGGACGAGGCGGCACAGACCATGCACGCCAACTGCACTGTCACTTTCATCAAAGGCTGCAAATTCAACATCTTGGTGGACACCATGACCGCCTGGGATGGAGCAAAGCTGTTGGCATTGCTCGAAGggATCCAGGTTAAACCCGAGGACATTGACTTTGTCATTTGCACCCACGGGCACTCTGATCACACTGGTTGCAACTACCTCTTCACCAACGCCGCTCATTTTTTGGGTCAAGCTGTGCAACgtgctgaaaaatatgaaacaacGCCCCTTCAAAATGGGAACGACTATGTGATTGAACCAAGTGTGAAGGTTGTGAGCACCCCAGGACACACGATGGACAGTGTGACTGTCCTGGTCGAGACAGGCCCGGATGCCTTTGGTCTAGTTGCGGTCACTGGTGACCTATTCGAGAGAGAAGAAGACATTGTGTGTCCCGAATTGTGGCGTGATGTCGCTGGCAGTGAAAATCCAAAGCTCCAGGAGCAAAACAGGAGCAAGATTCTGCAGCAAGCGGACTACATCATCCCAGGCCATGGTCCAATGTTCAAGAATATTTACAAGAAGGACCTTTAG
- Protein Sequence
- MEIKEHPENDETDESQEKFKPPGGEPMQEDFVPVLNADENKVVTKKKQRNLKLKTYTTADLNKALVCIANKGWSYRLAAKKFGIPYQTLYKRLKMKQPRGPAPQMPAKVEEKLVRFLLADPKRTVGEACEATKHALDLLGIKTSFTDNQPSKSWFTRFVKRHPEVKFASTTARQVDFHKNRLMKNYLREENVDWLLDFPLPLELTMSTGSKAKEQKTKPPADPWFLGPSQLLLKERQEKLEEDKAQNVSAEPSGFPRVKVLNVGYSRVTDEAAQTMHANCTVTFIKGCKFNILVDTMTAWDGAKLLALLEGIQVKPEDIDFVICTHGHSDHTGCNYLFTNAAHFLGQAVQRAEKYETTPLQNGNDYVIEPSVKVVSTPGHTMDSVTVLVETGPDAFGLVAVTGDLFEREEDIVCPELWRDVAGSENPKLQEQNRSKILQQADYIIPGHGPMFKNIYKKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -