Cdip013026.1
Basic Information
- Insect
- Cloeon dipterum
- Gene Symbol
- lolal
- Assembly
- GCA_949628265.1
- Location
- OX451262.1:23311821-23315131[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.1e-16 7.7e-13 48.0 0.0 2 42 392 433 391 436 0.94
Sequence Information
- Coding Sequence
- ATGTCTACTGCCCAACAGTTTTGCTTGAGATGGAATAATCATCAGCCGAACTTTGTAACCGTGTTTAGTTCCTTGTTACACAGCCAGGCCCTCACAGACGTCACACTTGCTGCCGATGGACAGCAAATAGAAGCTCACAAACTTGTGCTTTCAGCTTGCAGTACTTATTTCCAGgCGCTTTTTACTTCATACAGTGGTCATCAGCATCCTATTGTGATACTGAAAGATGTCACTTTCAGAGACCTTCGAACTATGGTAGATTTTATGTACTCGGGAGAAGTGCACGTTACCCAAGAACAACTTCCTTCAATTATTAAGACGGCTGAGATGCTGAAAGTGAAAGGACTCGCTGAGGGCCAGGATATGTCTCACGTGGACAAATCACAGGACACGCAGCTCTCCACGGAATCGTCGCGGCTGTCGTGCGAGGCGCTGGGTGCGTCCACGGAGTCCCACCAGACCTGGAGCTCTGAAAGGCGAAGTCCCTCGCCGTCGATTTCCCCCTCGGCCGCCTCGAGACGCAAGAGGATGCGAAAGTCGTCGACGGGCTCCACGTCCGGCTCAGGGGTGGCAGAGCGAGTGTCGGACCACCAGAGCGAAGTTGCATATCCCCACCACTCGCCTCGGCTGGAGCAGCAGGGCTCGGCGCAGATGAACCTGTCGACGGACATGTCCGAGCGGAGCATACGGGAGCAGGCGAGCACCGACTCGGAAATCCAGAACTGCTCGCAGGATAGCGGGAACGAGCAGATGCCTTTATCCATGGTCCACCCTggcgtgcagcagcagcaacagcagcaccCGAGCAGGGCCGTCGAGGAGGTGCCCAGCCCCCTGATGGAGCCCAGCGCGGCCCACCACTACTCCCCCCTCAGCGCGTCAGCTGGCTTCCAATGGGACCCGAGCCACAGCAGCGTGTACTACCCCCGCTACCCGCACCCCTCGTGTTCGTTCATCAACACCGGCCCCCCGACCATATCTCCGGACGCGCTGCGGCACAACGTGGTGCCCGCGTTCCAGCCGAAGCGGCAGTCGCCGTGCAGCATCAACATCCCGTCGGTGTCGCAGGCGAGCCCGGCGCCTTCGACGCCGTCGCCATCGGCGCCGCCGGCTGCGACGCCGCCGACGTCGCCGAGTCCGACGGTGCGGCGCAAGCGGACGGACACGCAGCGCGACGAGAATTTTCTGCAAGCCCTGGAGGCAGTGCGAACCGGCGGAATCGGATTCTGCAAGGCGGCTCGCATGTATGGCGTCAACAATCGGACGCTGTGGCTCGAGTACCGCCGCCGGGGCTATCCGATCACGCGTCCGAGCCTGAAGCCGCGGGCCACCACGCCGCAGGAGTACCAGTACCCGACGGTCGTGATGAAGAAGGAGCCGGGCGACTCGAGCTGCAGCAACGACGATTCGACCTTGGGTGAGGGCACCTCCTCCATGCCCCCCACccccgagcagcagcagcagcagcaacaacagccgcccccgcaacagcagcaacagccgccgcccccgcagccccaacagcagcagcagcagcaggcggtgAGCCAGAACCAGGTCGCCTACCAGCAGGCCACGCCGGCCGAAGTCATGTTTCTGCAGTCCAGCGACATTTTCTGA
- Protein Sequence
- MSTAQQFCLRWNNHQPNFVTVFSSLLHSQALTDVTLAADGQQIEAHKLVLSACSTYFQALFTSYSGHQHPIVILKDVTFRDLRTMVDFMYSGEVHVTQEQLPSIIKTAEMLKVKGLAEGQDMSHVDKSQDTQLSTESSRLSCEALGASTESHQTWSSERRSPSPSISPSAASRRKRMRKSSTGSTSGSGVAERVSDHQSEVAYPHHSPRLEQQGSAQMNLSTDMSERSIREQASTDSEIQNCSQDSGNEQMPLSMVHPGVQQQQQQHPSRAVEEVPSPLMEPSAAHHYSPLSASAGFQWDPSHSSVYYPRYPHPSCSFINTGPPTISPDALRHNVVPAFQPKRQSPCSINIPSVSQASPAPSTPSPSAPPAATPPTSPSPTVRRKRTDTQRDENFLQALEAVRTGGIGFCKAARMYGVNNRTLWLEYRRRGYPITRPSLKPRATTPQEYQYPTVVMKKEPGDSSCSNDDSTLGEGTSSMPPTPEQQQQQQQQPPPQQQQQPPPPQPQQQQQQQAVSQNQVAYQQATPAEVMFLQSSDIF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01046173;
- 90% Identity
- iTF_01046173;
- 80% Identity
- iTF_00344341;