Cdip016982.1
Basic Information
- Insect
- Cloeon dipterum
- Gene Symbol
- -
- Assembly
- GCA_949628265.1
- Location
- OX451263.1:29597376-29600163[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 2.1 3.8e+03 -2.3 0.0 18 29 118 129 112 129 0.82 2 5 1.6e-05 0.03 14.1 0.0 14 38 213 237 211 244 0.84 3 5 1.4e-07 0.00025 20.7 0.0 7 38 257 287 254 291 0.92 4 5 0.00059 1.1 9.1 0.0 23 39 323 339 320 344 0.84 5 5 4.2e-13 7.8e-10 38.4 0.1 7 40 368 401 365 405 0.91
Sequence Information
- Coding Sequence
- ATGACATCCACCGTTCCTGAACTTACGAGTGACCCTGTGGGTTCTGAGAGTTACGTGAAGCTCTCGTGGAAATCTTTTGAGTCTCACGCGACGGAAATGTCTCGTCAAATTTCGGACTTGAGACAAGGAGGACACTGGGTCGACACTACCCTGATCGCTGGAGGACACAAATTGATGGTCCACAAACTGGTCCTTTCAGCAAGCAGCTTATTTCTAAGGaacattttgGATGACATAAGTGTGCCCGATCCGTGCATAATTCTCCCCAGCGACGTGAACATAGAGGAACTGTCCATCCTGATCGAATTTCTGTACAGAGGCGAAATCAAGCTTTCGGTGGGCCAGCTGCCTTCGCTGTCACGGCTGGCGCAAATGCTCGGCATCCCTGGCCTCCCAGGTTTCACCGATGCTGTTCTCTCAAAGCCAAATGAAGAGAATGAGTGGTTAGTGGAGGACGACGAGAGTCGCGAGGAGGAGTTTAAGGATGATGAAATGGACGAGTCTGCTGGCACGAATTCACCAGAGGTCCCAATCAAGTCTCCTTCAAAGCTCATTTCTCAAGGAGGGGAAGCCAAACGAAACAAcaGTGGGACATACAGCGCTTCAAACGTGGAGGAAGGCTTCAAACTGCTGCAAAGCGGCAAGTCGATCGGGCAAGCGGCGAAATTGGCAGGCGTGCCTCGCACCACGCTGTACAGCAAAGCGAAGAGCTGCGGCGTCATCCTGAAGCAGGACAAAGAGGTCAGGTACACGGCTCAGCAAGTGGAAGACGCGGTTCGGGCCGTTCTCGCTGGCCAGAGTCTGAAAAGTGCTGCCGACCAGTTCGGAGTGTCCAAGACTGTGCTTTGGCGTCGCACGCAAAGCCTGAGACCAGCTTTGCCGAAGAAAAAGCAGGTCAGATACTCGAGTGCCCAGAAACAGGCTGCGGTCAATGCGCTCAAGTGTGGCGCCAAGGCCAGGACGGTCGCTCAGGAATTTGGAATCCCTGCGGCGACGTTGTACCGAGAAAAGACGAGACTCATGGAGTTGGGCGCGCTGCCCGGGGAAGGCGGCAAAAAGCGCTCTTTGGAGGACGCGATGGACAGGCAACTCAGGGTGCAGCAAGCGGTCATCGCCTGCAAGGAGGGAAAAATGTCGCAGTCATCGGCCGCTAGTCATTATGAGGTGCCGAAAACGACGATATGGAGGCGGCTGCGTTCTTCCACTCGTTGTTCGTCAAACATTCCGAAAATAGACTTGGACAGCAACGCTCCCATGACCATCGGCAGCGCCCACCAGAAAGAAAGCGACACAGACTTTGCCACGTTCGTGATAGACGGGACGAACCTGAAACTGATCTCCGAGGAGGACACCATGTCCATGGAGTCGTCGCACTACATCGTGCTGTCCGGCAGCGACGCAGACAGTTTGCCAGGCCTCCAAGTCATGCTCCCACAAaCTGAGGAAGGCAGCGTGGTTTGCGAGGTGGAAGAGCTGAGCCACCAAGGAGTCGACATAGAAGTGATAGCTGAGTCAGgcgaaaaatcataa
- Protein Sequence
- MTSTVPELTSDPVGSESYVKLSWKSFESHATEMSRQISDLRQGGHWVDTTLIAGGHKLMVHKLVLSASSLFLRNILDDISVPDPCIILPSDVNIEELSILIEFLYRGEIKLSVGQLPSLSRLAQMLGIPGLPGFTDAVLSKPNEENEWLVEDDESREEEFKDDEMDESAGTNSPEVPIKSPSKLISQGGEAKRNNSGTYSASNVEEGFKLLQSGKSIGQAAKLAGVPRTTLYSKAKSCGVILKQDKEVRYTAQQVEDAVRAVLAGQSLKSAADQFGVSKTVLWRRTQSLRPALPKKKQVRYSSAQKQAAVNALKCGAKARTVAQEFGIPAATLYREKTRLMELGALPGEGGKKRSLEDAMDRQLRVQQAVIACKEGKMSQSSAASHYEVPKTTIWRRLRSSTRCSSNIPKIDLDSNAPMTIGSAHQKESDTDFATFVIDGTNLKLISEEDTMSMESSHYIVLSGSDADSLPGLQVMLPQTEEGSVVCEVEELSHQGVDIEVIAESGEKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00344449;
- 90% Identity
- iTF_00344449;
- 80% Identity
- iTF_00344449;