Cdip016685.1
Basic Information
- Insect
- Cloeon dipterum
- Gene Symbol
- bab1
- Assembly
- GCA_949628265.1
- Location
- OX451263.1:25930377-25934569[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.1e-10 2.1e-07 30.6 0.0 1 38 285 323 285 328 0.90 2 4 1.6e-08 3e-05 23.7 0.0 2 38 340 376 339 382 0.87 3 4 2.1e-15 3.9e-12 45.7 0.0 3 42 396 435 394 437 0.95 4 4 9e-17 1.7e-13 50.1 0.0 3 40 447 485 445 487 0.93
Sequence Information
- Coding Sequence
- ATGAGTACCAACGGCCAGCACTTTTGCCTAAGATGGAACAATTATCAAGCGAACATGACATCAGTTTTCCACCAATTGCTGACGGATGAGGCTTTCGTCGACGTCACCCTCGCCTGCAATGAAGACACGCTCAAAGCTCACAAAGTCGTTTTGTCGGCATGTTCGCCGTACTTCCagaagctgctgctggacAACCCTTGCAAACACCCTGTGATCATCCTGCCCCAAGAGGTCAGCTTCCTAGACCTGCAGTTCATCATCGACTTCGTGTACCGCGGCGAGGTGGACGTCAGCCAGGACGAGCTGCAGAGTCTGCTGCGGACGGCCGAGCAGCTGAAAATCAAAGGCCTGTGCGACGTGGCCGCCCGCGAGATGGGCCACCACCACGGCTACCGGCCGCACCCCATCCACCCTCACCACCCGCACGCCAAGGTCAAGTTCTCCAGCTTCAAGCGAAAGCTGCACGACGCCGAGCCGATCGACTACTACAAATCTTCCAACTCGGAGATGGACGACTACGACGAGGATGACGTCGACGTCGACGACTACGACGACGACATGGAGCCCAAGAACTACAGCAGGAAAGACCCCCTGGTCGACGTCAACGCCAACTCGACGCAGCAGAAGTCGCACGAGCCCCCTCCCGTCTCAAGGGTTGATGATCCACCTCCCCTAAAGGTCATTAATACCGGGAATTTTCCAAAGGAAGAAAACCATCAGCCACCAATGATGGTTACTCCAGAACTCCTTGGTCTCATTCCAACCTCAGCCCTAAATAATTCCAGCCTCAACCTTAAATCAGTCCCAAATGAAAACGAGGTGATCATGACGCACAAGAGCACCAAGCACTGGACGCAGGAGGACATGGAGCTGGCTCTGGAGGCGCTGCGGACGCAGGCGATGAACCTGACGAAGGCGTCGGCCACCTACGGCATCCCGTCGACGACGCTGTGGCAGCGGGCGCACCGGCTCGGCATCAACACGCCCAAGAAGGACAACGCGGCCAAGACGTGGAGCGAGGCCGACCTCGAAGTGGCCCTCAAGGAGCTCAGGGCGGGCCGCATCTCGGCCAACCGCGCCTCCAAGCAGTTCAATATCCCCAGCAGCACCCTTTACAAGATCGCCAGGAAGGAGGGCATCAAGCTGTCGGCGCCGTTCAACGCGTCGCCCACCTCCTGGAACTCGGACGACCTTGCGAAGGCTCTTGAGGCGATTCGGAGAGGTGCGTCCGTGCAGAAGGCGGCGGCCGAGTTCGGCATTCCGTCGGGCACCCTGTACGGCCGGTGCAAGCGCGAAGGCATCGAGTTGTGCAAGAACACTCCGGTGCCGTGGAGCCACTCGGACATGTCCGAGGCGCTGGAGGCCGTCCGGGTGGGCGACATGTCCATCAACCAGGCGGCCATCCACTACAACCTGCCCTACTCGAGCCTCTACGGCCGCTTCAAGAGGGTCAAGTTCGACGACAACAAGATGGACTACGATGTGTTCAACAACAGCTCCAGCGACCCGCACTAA
- Protein Sequence
- MSTNGQHFCLRWNNYQANMTSVFHQLLTDEAFVDVTLACNEDTLKAHKVVLSACSPYFQKLLLDNPCKHPVIILPQEVSFLDLQFIIDFVYRGEVDVSQDELQSLLRTAEQLKIKGLCDVAAREMGHHHGYRPHPIHPHHPHAKVKFSSFKRKLHDAEPIDYYKSSNSEMDDYDEDDVDVDDYDDDMEPKNYSRKDPLVDVNANSTQQKSHEPPPVSRVDDPPPLKVINTGNFPKEENHQPPMMVTPELLGLIPTSALNNSSLNLKSVPNENEVIMTHKSTKHWTQEDMELALEALRTQAMNLTKASATYGIPSTTLWQRAHRLGINTPKKDNAAKTWSEADLEVALKELRAGRISANRASKQFNIPSSTLYKIARKEGIKLSAPFNASPTSWNSDDLAKALEAIRRGASVQKAAAEFGIPSGTLYGRCKREGIELCKNTPVPWSHSDMSEALEAVRVGDMSINQAAIHYNLPYSSLYGRFKRVKFDDNKMDYDVFNNSSSDPH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01046395;
- 90% Identity
- iTF_00344344;
- 80% Identity
- iTF_00344344;