Choo003625.1
Basic Information
- Insect
- Clitarchus hookeri
- Gene Symbol
- stc
- Assembly
- None
- Location
- NQII01000737.1:514170-569977[-]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 7e-09 7.2e-05 21.9 12.3 1 18 5 22 5 23 0.93 2 8 0.56 5.7e+03 -3.3 0.9 5 10 54 59 54 59 0.85 3 8 1.3e-06 0.014 14.7 15.4 4 19 72 87 65 87 0.87 4 8 9.4e-06 0.096 12.0 12.3 6 19 104 117 103 117 0.96 5 8 0.28 2.9e+03 -2.3 2.0 5 10 146 151 146 151 0.93 6 8 0.075 7.7e+02 -0.5 1.4 9 14 159 164 158 171 0.86 7 8 9.4e-06 0.097 12.0 15.8 1 16 177 192 177 203 0.87 8 8 8.8e-07 0.0091 15.2 17.6 1 19 209 228 209 228 0.96
Sequence Information
- Coding Sequence
- atgGGGTTGCAGTGCAGGAACCACCGGTGCGAGGCGCTGTGCCACCCAGGGCCGTGCCGGTCCTGCGAGCTGGCTCCGGACAAGGTGACCCACTGCCCCTGCGGCAAGACCCCGCTGAGCGAGGAGCAGGCACGAACCAGCTGCCTCGACCCCGTGCCCACCTGCCAGCTTGCCTGTGGCAAGAAGCTAAGCTGTGGGCAACCAAACAACCCCCACTCATGCCAAGAGCAGTGCCATAACGGGCTGTGCCCGCCCTGCCCATCCACCACGCTGGTGCGGTGCCGCTGTGGCAACATGGATAGGGAGATNTGCCAAGAGCAGTGCCATAACGGGCTGTGCCCGCCCTGCCCATCCACCACGCTGGTGCGGTGCCGCTGTGGCAACATGGATAGGGAGATACAGTGTGTGGAGCTCGTCAGTCGTGCCGATGATGCCCGTTGTGAGAAGAAGTGCACCAAGATTCGCAAGACCATTCCTTGCCACCAGGGTGAGTTCTCGTGTGGCCTAGCATGCAATGCAGAGCTGCAGTGCGGCCGGCACCACTGCATCCTGCCATGCCACGCGGGACCGTGCCTCCGCGATGGTCAGAAGTGCACCCAGCCGTGCACCACTCCTCGCACCCTGTGTGGCCATCCCTGCTCGGCCCCCTGCCACGAGGGTCCCTGCCCCTCCACTCCCTGCAAGGAGACGGTTAAAGTGACGTGTGAGTGTGGGCATCGCTCTACAGGCCGTGCCTGTTCTGACAACGTGAAGGAGTACCAGCGAATAGCAACAGCAATGCTTGcctccaaaatggcagacatgcaACTGGGACTTTCCATTGACATCGGCGACATCCTCGGCAACCCGAACACCCAAAAGATGGCACTTAAGACGTTGGAATGCAGTGATGAGTGCAAGCTGATCGAGCGCAACAGGCGGATGGCCATTGGCCTGCAGATCCAGAACCCGGACCTGAGTGCCAAGCTGACGCCGCGGTACTCAGACTTCCTGCGCCAGTGGGGGAAGAGGGACCCCCAGTTCTGCGGCATGGTGCACGAGAAACTCACCGAGCTGGTGCAACTGGCCAAACAGTCAAAACAGAAAAGTCGCAGCTACTCCTTCCAGCCAATGAACAGAGACAAGCGCCACTTTATCCACGAGTACTGTGAACACTTTGGGTGTGAGTCGGTTGCGTACGACCAGGAGCCAAAGAGGAACATTGTTTCCACGGCTGTAAAAGACAAGtCATGGCTGCCAAGCATGAGTTTGCTGGAGTTCCTGCAAAGGGAGAGTGGCCAGAGGAAAATTCCAAAGCCAGTTATTGGTGCCAATAGAACACCAGCTCACAGAGCAATGGATGTCCTACCAATGAAGTATTCCCAGGCGCAAGCACTGAAGTCCCCAGGCCAGACTTCATCCACGTACAAAAAGTAA
- Protein Sequence
- MGLQCRNHRCEALCHPGPCRSCELAPDKVTHCPCGKTPLSEEQARTSCLDPVPTCQLACGKKLSCGQPNNPHSCQEQCHNGLCPPCPSTTLVRCRCGNMDREXCQEQCHNGLCPPCPSTTLVRCRCGNMDREIQCVELVSRADDARCEKKCTKIRKTIPCHQGEFSCGLACNAELQCGRHHCILPCHAGPCLRDGQKCTQPCTTPRTLCGHPCSAPCHEGPCPSTPCKETVKVTCECGHRSTGRACSDNVKEYQRIATAMLASKMADMQLGLSIDIGDILGNPNTQKMALKTLECSDECKLIERNRRMAIGLQIQNPDLSAKLTPRYSDFLRQWGKRDPQFCGMVHEKLTELVQLAKQSKQKSRSYSFQPMNRDKRHFIHEYCEHFGCESVAYDQEPKRNIVSTAVKDKSWLPSMSLLEFLQRESGQRKIPKPVIGANRTPAHRAMDVLPMKYSQAQALKSPGQTSSTYKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -