Choo005385.1
Basic Information
- Insect
- Clitarchus hookeri
- Gene Symbol
- Zfhx4
- Assembly
- None
- Location
- NQII01006607.1:5964-46690[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.13 12 5.8 0.1 2 23 444 466 443 466 0.91 2 17 9.7e-05 0.0095 15.6 1.8 2 23 704 726 703 726 0.95 3 17 2.4e-05 0.0024 17.5 0.7 1 23 758 782 758 782 0.92 4 17 0.0036 0.35 10.7 0.4 1 22 846 867 846 870 0.91 5 17 2.3 2.2e+02 1.9 0.9 2 20 1061 1079 1060 1084 0.92 6 17 0.4 39 4.2 1.2 1 23 1109 1133 1109 1133 0.91 7 17 1.7 1.7e+02 2.2 0.2 1 22 1220 1241 1220 1243 0.79 8 17 0.095 9.3 6.2 0.8 1 23 1261 1284 1261 1284 0.92 9 17 0.059 5.7 6.8 2.2 2 21 1391 1410 1391 1414 0.90 10 17 0.039 3.8 7.4 1.5 3 23 1428 1451 1426 1451 0.88 11 17 0.0041 0.4 10.5 1.7 1 23 1473 1495 1473 1495 0.97 12 17 0.00057 0.056 13.2 0.9 2 23 1502 1524 1501 1524 0.96 13 17 0.00024 0.023 14.4 3.9 1 23 1634 1658 1634 1658 0.92 14 17 0.0028 0.28 11.0 0.6 1 22 1678 1699 1678 1702 0.89 15 17 0.00038 0.037 13.7 0.2 1 23 1761 1785 1761 1785 0.93 16 17 0.079 7.7 6.4 0.1 2 21 1923 1942 1922 1943 0.93 17 17 0.28 28 4.7 1.6 2 19 2074 2091 2073 2096 0.91
Sequence Information
- Coding Sequence
- TTGTCGGATCTGCGACAGTTCAGTGCGTCCGGCTGTGCGGACAGCAGCGCTCCGATCCATCAGTCCAGAGACGGCGGGATATTCCAGCACGATTACCGGGCCGTCGCCCGGCGAAGGAAAGAGgtgcgggggaggggggtttcCCGCGGAGGGGGTGGCAACCCCCGTCCACTGGCCACTCGTGCGCAGGACTCCGGGGATATCCCTGCGCAGGTCTCGATGGGGGGCGTAGACGCACACCATCCCTCGCGCATACGCTGTGCTTGTCGGGCATTTGTTTGCAATGCCGTGGCCCTCAGCGTAAAGCAGGCCCGCATTCCAACCCCCTTCTTTTCAACAAATGCTCGCGGCGACTCGGCCGACGAGTATCGGGCGCCCTACCCTCCATTGTGTGCCGCTCGCCCGCCTACTGAAGCGTCGTGGTCGGTCGCCATGCCTACCCCCGCCTCCGGGTCGTCGCTAGGCGAGCAGGAGGAGGAAGCGGGTCCCTGCAGCCCACCGCACAGCCGCAGGAAGAGGAAGCGCAAGAGGGAGGTCGACGACGACGACGCCATGAGTCCTGAGGAGGAGGCGTCTGCGTCGCCGCCGGCGGCGGTGATCGCCGGCCGGGAGGAGGAGCAGCGACGTCTGGCGTCGCCGCCCTCGGGCAGCAAGTTCCTACACGACGAGGTGGTCGCGACGCGGGACCAGACGACGGCGTCGCGCGGCGACGACGCGACCGCTGCGTCGTCCGACGACGACCGACCCGGCAACAAGGCGAAAACGAAAAGCGCCGTCGGGGAGAGACTGTGTCGCGACAGCTTCGTCCCCGATGCGGACGACTCCCTGGGCACGAGCAGCGACGTGGAGAAGTTCGACGGCAAGATCGTGTACAACCCGGACGGCTCGGCGTACATCATCGAGGACAGCGAGCTTAGCGAGGAGGACACGAGCCTCGAGGTCTTGCCGAGGATCATCGGCGACGGTTGCATCGTAGACGGTCGTGGCGTTAGCATCTCCCATGCGCAATCGTTCCCGCAGATAGCGAGCGCGTTCTACGTGTCGAGAAACCCCTCCCTTTACAACGCTCTCTATGGGAGCTCGGCAAACTACGCCAACAACCTCTTGCAAGACAAGAAAATAGTTCCTGAAGTTCCGATCATGCATAGTTACAGGGTTTACACAGTTCGTGATAGTAAAACTGGTGATAGTGAAGATGTGAAGTCGGAGGTCGTGAACCGTCGGAGAGGCGACGGCTGTGTTGGAAAGAAGGCGGATAACTCGGAGAAGAACTCGAACGACAAATTCTCCGGGAAAGACTGTTCCTCCGTGCCGGTGAAACCTATTTTGATGTGCTTCATCTGCAAGCTGTCTTTCGGGTACGCCAAGTCGTTCGTGGCGCACGCGATGGGGGACCACAACGTGGCACTGCTGGACGATGAGAAGGACATCCTGGGCCACAAGAATGCCTCCGCCATCATCCAGTGCGTGGGGAAGGACAAAGAGCCGCTCGTGTCGTTCCTGGAGCCGCTACCGCCGCCCGCGGCGAACTCTCTGGGCGTTGGAAAGAAGGTGGTGGCCCCCGTCCTTCCACCTCCTGCGCCAACGTTCAGCGAGGCGGACATGAAGAATCTGATGAGTGTGGTGACGTGTACCGCCGCCTCGCAGCTAGTTCCTAAGGACCAGAAAGTGTCGTACAGTATCGCGGGTGACAGCGGGGAGGCCGAAAGCCTCGTGGTTCACCATCGGCAGTCGCTGGAGTGCACCAACGCTTCTTTGGGGCGACCCAACGTCCAGAATCAACATGTTCCTGAGACTTCGTGTGATGGACCTGACGAGGAAGAGCCCGATATCAGCGTCCGCGGTGTCGTCGAACAACGGGCGCGGCAGCGTGTCCCCCGGAGCCAGTCCGTCGCCGGGCTCGACCCTCAGCCCCCTGCTGTCGAGTGCACCCACGTCCCTGCAGTACCCGCAGCCACCACCCAACTTCCTGACGGGCACGACCATCGGCGTGTGCCCGGACCACATGGGTGGGCGGCCGAGCGGTGTCGAGTGCGCAAAGTGCGAGCTCATCTTGAGCTCNGTGGCGTGCTCGCCGGCATGCACTCGCGTAACTCCTGCAAGACGCTCAAGTGCCCCAAGTGCAACTGGCACTACAAGTACCAAGAGACGCTCGAGATACACATGAAGGAGAAACACCCCGAGGCGGAGACGTCGTGCATCTACTGCATCGCCGGGCAGCCGCACCCCAGGCTCGCCCGGGGCGAGACGTACACGTGCGGGTACAAGCCCTACCGATGCGAGGTGTGCAACTACTCGACGACGACGAAGGGCAACCTCAGCATCCACATGCAGTCGGACAAGCACCTCAACAACATGCAGGAGCTGCAGAACGGCGGCGGCGGGGGCACGATGCCGCCTACGTCGGAGCCTCCGCCGCCTTCCTCGCAGCCTCCGCACCACGGCAAGTCGCCCGGGCCGGGCCTCGTCAGCCCCGGCGTCAACCATCACCACCCGCACCACCCCCTCGTCCAGGCGCAGAAGCCCAAGCCCACGTTCCGCTGCGACGTCTGCAACTACGAGACGAACGTGGCGCGCAACCTGAGGATCCACATGACGAGCGAGAAGCACACGCACAACATGATGGTGCTGCAGCAGAACGTGAAGCACATGCAGACGTTGTCGGCTCTGCACCAGCAGTCTCAGAGCCAGCAGCACCAGTTCAGCTTCGAGTCGCTGCTGCACTTCCACCCGGATGATGACGGGCGGCCAGCTACCGCCGCACATCCCTCCGGAACTGNNNAACTGGCGCCGCATATGGACATGGGGCTCAACCCGGAGACGATGGAGCCGCCTCCCGAGCCCGCCGACCCCAACCCGCGCCACCTCTTCCAATGCTGCGTCTGCAGCGCCTTCTCGACGGACTCGCTAGAGGCCCTCGGCCACCACCTGTCCGCCGACCGCACCAAGACTCGCGAGCAGGAGATCCTCGCCGTGGTGGCGGGCCACTACGTCTGTCGCCTCTGCACGTACAAGACCAACCTCAAGGCCAACTTCCAGCTGCACTGCAAGACAGACAAGCACCTGCAGAGGCTGCAGCACGTGAACCACGTGAAGGAGGGCGGCCCGCGGAACGAGTGGAAGCTGAAGTACGTGCTGACGGTGTCTTCGTCGTCGTCGGCGGCTGGAGGCATCCAGGTGCGTTGCCACGCGTGCGACTACTACACCAACAGCGCGCACAAGCTGCAGCTTCACGCGGCTGGGCAGCGCCACGAGGCGTCCTGCCTGCTCTTCCTGCACCTGAGGGAGTGCGAGGCGTCGGCGTCGACGGCGGCGGAGCGCGTCTACCACTGCGCGCTCTGCGGCTTCTCCAGCCGCGCCAAGCTGCAGTTACTGCAGCACGTGCGCTCCATGAAGCATCTGCAGATGGAGCAGCTGCATCAGCTGCAACGGCGCAGTGAGGGCAAGGACCTGCACACGGACATCGGCGAGGTCTTCCAGGTCATCGCGCAGCCGTCGGAGCACAACTTCGTTGACGCCGCTGAGCAAGATTCCCGGAAGGAGATCCAGCAACATCAGATCCAACAGCAACTGCAGCAGCAGGTGCCGAGGGAAGCAAAAGTCGAGCCCCACCACGAAGCCGAAGAGAGTGTAAACAACTCCGAACACTCTACACAACATATGTGTCCTTATTGCAACTACATCAGCAACTCGGAGATGCGTATCCAGGCTCATGTACTGGCGCAACATGGGCAAGGCGAACCCTCACCTCCAGCCCAAGCTATTTCCCCTGCCAAAGAATTCCTGTGCCCCTTGTGCCAAGATGGGTTCCGTGAGCGCTGCCAGTTAGAGAGGCACGTGATGCAGATCCACAGTGTTAACTCGGAAGGCCTTCAGAGATTATTGCTGCTTGTTGACCAGTCTCATTGGCTGAATGCTGTCAATCGCTCGCCTGCATCGTCAACACCGCAGGctcagcagcagcaccaccatccaCAACACCAAACTCCACCACACCCGCATCTTAATCACAATCAAATGATCTCGCCTTCCAGCTCTGCAGGATCCTCCAAGGAGCTGGACTCAAGTGGAGGAAAGCAGAACCATTCGGATGCTAATTCCAACGAGGATCGGGAAGATAATCCACTACTGTCGCCTTCCCCAGACGATCAGGCGGATGCAGATGAAAACAGGTGTCAAGCATGTTTCAAAAGTTTCAGAAACATTGACGATCTGTGTGCCCACCACATTGAGACGGGTCACCTCGAGATGAAACAAACTCCAGCAGGCCCAGGATACTTGTGTTGGAAAAAGGGTTGTAACCAATATTTTCAGTCAGCACACAATCTGCAAGCACACTTTCGAGAACTTCATTCACCACGTGTTGGTACTGCAACTCAACAAGGCATTGCAGTCTCTGAAAAACATGTGTATAAGTACAGGTGCAATCAGTGTAGTCTCGCCTTTAAAACTATGGAGAAGCTCCAGTTGCATTCGCAATATCACCTAATTAGGGATGCCACgaagtgtgtgttgtgtggaAGGAGCTTTCGTTCGGTAGTGGCATTGCATAAACATGTGGAGACTTCACATTCTGAGTTGTCAGAGGAAGAATTAGCTGCTTATAAACAAAGCTTGATGAACAATCCTCTTCTTTTGGCTGGTATAAGTGGACAGATGCTGGATCCATCAACGAATGAACTACTAAGAAAGGAAAGTATGAAGATGGAGGCAGATGATCTCGTGGATACTGACGAGAGCCCAATGAAAGACCACCACGAAGATGGGATCGGCAATGCACATAGTGGAGATGGCGATAACAGTGAcgattcagtggtgtataaagaGCAGCAGTTCCTAGAGGATTACCTCAACAGCCAAGCTATTGCCGAAGACAACTATAACGACCCTAATAGGAAGTACAAATGTCACCGGTGCAAGGTTGCATTTACCCGGCAAAGTTACCTGACGAGTCATAACAAGACATTACTGCACCGTAAAGGAGAAAAGTTAAGTTATCCTATGGAGAAGTATTTGGACCCAAATAGACCTTACAAATGTGACGTGTGTAAAGAATCATTCACTCAGAAGAATATCCTATTGGTACATTACAACTCCGTCAGCCACCTGCATAAGTTGAAAAGAGCCATGCAGGAACAGcaaaacaacaacaataataataatgctgtCACTGCAGTTTCTCCTTCTTCGGCTGCTGCTGCCTTGGCTGCAAGTCTTGGTGTGACACCACCACCCACTCCCAAATCTTGTGTGATTTCTGACGAGGATGACAAAAAACcttataaatgtaacatttgcaAAGTTGCTTATAGCCAAGGATCTACCTTGGACATTCATATGAGATCTGTACTTCACCAGACAAGGGCATCCAAGCTCCAGGATCTTGCATTGTCGGGGCAGATCGATCTGAGTAAGCCTTTAATAGAACAGCCAGAACCCCAGAAAGCTCAAGATCAACACAAAAGAATGCTTCAGGATATGATGGGGTCATCTCCAAAGCAGTCAGTTACATCGCCACCTTCTGGTATTAACAGCAGCTACACGACCTTGCAAGTGCCGTCTTTAGCCCAGGACTCACCACCTGTTACGGGCAGTCAAATAGTTCCTCAAACCTCCAGTGCTGCTCCTGTGGTGCCATCGCCATTGTCGATCCCAACCATGACGTCAGTTCCTAGTAGCATAACACCGAACTCGAATGCAGTTCAACAAACTGTTCAAGCATCACCTGTGATGGCCTCGTCGCCTTCTCCTCAACATGGTATGGTATCGTGTCAACGATGTAGTGCACTGTTCGCTAGTCAAGAACAGCTGACAACACATCAGCAGCTATACTGCCTCTTCGGAAGTCCGATCAATTTATTCCCTCCACTCGCTGGACCACTTTCAACTCCTTCCCATCAATCTCCTCAGCCACCAGGACTGAATAAAACACCACCTCCTCTATCCACGACCCCACACTTACAAGACGATTCATTCCAGAGGCTTACGATGCCAAACAAGAAGTCGTCACAGGTTTACAAACATCTGCTTGAGAGCTACGGATTTGACTTGGTGAtgcaatttaatgaaaatcaCCAAAGGCGCCAGAGGAAGGAGCGCGAAGATGATGACGTGCCTCCGTTAATGCCAACAACTCATGCACCTGTACCAGATGAGGAAGTCGATGGGCCGATTGAAGATGAAACTGCAGAACAAGACCTGCCAGAAGTTGCGAAGTCAGTATGCCAGCACTGCCGGAAAGAATTCTCTAGTGTGTGGGTACTTAAAGCTCATTGTGAAGAAGTGCACAGGGACCTTGTTCCATTAGAGTTTTTAGAAAAGTATgctcaacaaattaaatttgagtATGAGAAGAAAGGTGTTAGCATGGCGCCTCCACCTGGGACACCAACTCCAGTGACACAGCCTGAAATATCTCAAGACAAAGAACTCCAAGAAGACAACAAAGAGGTCTTACACGCAAAGATCGGCTTGACGCCCCAGCACCAACCCCAACAACATCAGCAGCAACAACAGTCGCAAGTTGGGTCTCATCAGGCGCCGGACACGACACCTCCAGCTCCGAGCACTCCCACGGCATCTTCGACTCCCGCCTCCAGCACCGACTCCATCCCGGCGACGTTGTCAACGCCGATGGGTCCTGCTGGAGCGCCCAGCCTGTCCTTGTCGTTGGCGCAGCAGATGAACGAGATGCAGGCGGCGTTGAATGCCATGGCGGCCTCTCAGCTGCAGCAGCAGCTGCAACACTTCAACCCCATGATGATGGGCCTGGGCATGGGACTACCTCTGGGCCTAAACATGAACGCGCTCGCAGCCATGAATCTGCAGCCTCCACTGGTGCCCATGATGATGCCGCCGCCTCCGTTTGACCACCTGAGCCTGGCGCAAGCGCAGAACCCTCTGTTTTCTCCGCAGGCAGCGGCCATGGACCCCGCTGGACTCCTAGCCAAACAACAGCAGCACCTccttcagcagcagcaacaagcGGTGAGTCACAGCTCACAGCTTTACTAA
- Protein Sequence
- LSDLRQFSASGCADSSAPIHQSRDGGIFQHDYRAVARRRKEVRGRGVSRGGGGNPRPLATRAQDSGDIPAQVSMGGVDAHHPSRIRCACRAFVCNAVALSVKQARIPTPFFSTNARGDSADEYRAPYPPLCAARPPTEASWSVAMPTPASGSSLGEQEEEAGPCSPPHSRRKRKRKREVDDDDAMSPEEEASASPPAAVIAGREEEQRRLASPPSGSKFLHDEVVATRDQTTASRGDDATAASSDDDRPGNKAKTKSAVGERLCRDSFVPDADDSLGTSSDVEKFDGKIVYNPDGSAYIIEDSELSEEDTSLEVLPRIIGDGCIVDGRGVSISHAQSFPQIASAFYVSRNPSLYNALYGSSANYANNLLQDKKIVPEVPIMHSYRVYTVRDSKTGDSEDVKSEVVNRRRGDGCVGKKADNSEKNSNDKFSGKDCSSVPVKPILMCFICKLSFGYAKSFVAHAMGDHNVALLDDEKDILGHKNASAIIQCVGKDKEPLVSFLEPLPPPAANSLGVGKKVVAPVLPPPAPTFSEADMKNLMSVVTCTAASQLVPKDQKVSYSIAGDSGEAESLVVHHRQSLECTNASLGRPNVQNQHVPETSCDGPDEEEPDISVRGVVEQRARQRVPRSQSVAGLDPQPPAVECTHVPAVPAATTQLPDGHDHRRVPGPHGWAAERCRVRKVRAHLELXGVLAGMHSRNSCKTLKCPKCNWHYKYQETLEIHMKEKHPEAETSCIYCIAGQPHPRLARGETYTCGYKPYRCEVCNYSTTTKGNLSIHMQSDKHLNNMQELQNGGGGGTMPPTSEPPPPSSQPPHHGKSPGPGLVSPGVNHHHPHHPLVQAQKPKPTFRCDVCNYETNVARNLRIHMTSEKHTHNMMVLQQNVKHMQTLSALHQQSQSQQHQFSFESLLHFHPDDDGRPATAAHPSGTXXLAPHMDMGLNPETMEPPPEPADPNPRHLFQCCVCSAFSTDSLEALGHHLSADRTKTREQEILAVVAGHYVCRLCTYKTNLKANFQLHCKTDKHLQRLQHVNHVKEGGPRNEWKLKYVLTVSSSSSAAGGIQVRCHACDYYTNSAHKLQLHAAGQRHEASCLLFLHLRECEASASTAAERVYHCALCGFSSRAKLQLLQHVRSMKHLQMEQLHQLQRRSEGKDLHTDIGEVFQVIAQPSEHNFVDAAEQDSRKEIQQHQIQQQLQQQVPREAKVEPHHEAEESVNNSEHSTQHMCPYCNYISNSEMRIQAHVLAQHGQGEPSPPAQAISPAKEFLCPLCQDGFRERCQLERHVMQIHSVNSEGLQRLLLLVDQSHWLNAVNRSPASSTPQAQQQHHHPQHQTPPHPHLNHNQMISPSSSAGSSKELDSSGGKQNHSDANSNEDREDNPLLSPSPDDQADADENRCQACFKSFRNIDDLCAHHIETGHLEMKQTPAGPGYLCWKKGCNQYFQSAHNLQAHFRELHSPRVGTATQQGIAVSEKHVYKYRCNQCSLAFKTMEKLQLHSQYHLIRDATKCVLCGRSFRSVVALHKHVETSHSELSEEELAAYKQSLMNNPLLLAGISGQMLDPSTNELLRKESMKMEADDLVDTDESPMKDHHEDGIGNAHSGDGDNSDDSVVYKEQQFLEDYLNSQAIAEDNYNDPNRKYKCHRCKVAFTRQSYLTSHNKTLLHRKGEKLSYPMEKYLDPNRPYKCDVCKESFTQKNILLVHYNSVSHLHKLKRAMQEQQNNNNNNNAVTAVSPSSAAAALAASLGVTPPPTPKSCVISDEDDKKPYKCNICKVAYSQGSTLDIHMRSVLHQTRASKLQDLALSGQIDLSKPLIEQPEPQKAQDQHKRMLQDMMGSSPKQSVTSPPSGINSSYTTLQVPSLAQDSPPVTGSQIVPQTSSAAPVVPSPLSIPTMTSVPSSITPNSNAVQQTVQASPVMASSPSPQHGMVSCQRCSALFASQEQLTTHQQLYCLFGSPINLFPPLAGPLSTPSHQSPQPPGLNKTPPPLSTTPHLQDDSFQRLTMPNKKSSQVYKHLLESYGFDLVMQFNENHQRRQRKEREDDDVPPLMPTTHAPVPDEEVDGPIEDETAEQDLPEVAKSVCQHCRKEFSSVWVLKAHCEEVHRDLVPLEFLEKYAQQIKFEYEKKGVSMAPPPGTPTPVTQPEISQDKELQEDNKEVLHAKIGLTPQHQPQQHQQQQQSQVGSHQAPDTTPPAPSTPTASSTPASSTDSIPATLSTPMGPAGAPSLSLSLAQQMNEMQAALNAMAASQLQQQLQHFNPMMMGLGMGLPLGLNMNALAAMNLQPPLVPMMMPPPPFDHLSLAQAQNPLFSPQAAAMDPAGLLAKQQQHLLQQQQQAVSHSSQLY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -