Choo006315.1
Basic Information
- Insect
- Clitarchus hookeri
- Gene Symbol
- znf423
- Assembly
- None
- Location
- NQII01000504.1:282016-314648[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 5e-06 0.00049 19.6 0.2 1 23 10 32 10 32 0.98 2 20 0.00011 0.011 15.4 0.8 1 23 55 78 55 78 0.95 3 20 6.9 6.8e+02 0.3 0.1 9 23 125 140 120 140 0.89 4 20 0.014 1.4 8.8 0.2 3 23 161 181 160 181 0.98 5 20 0.063 6.2 6.7 1.1 2 23 208 229 207 229 0.94 6 20 0.0036 0.35 10.6 0.1 3 23 239 260 237 260 0.94 7 20 0.21 21 5.1 0.3 1 23 265 288 265 288 0.92 8 20 6.5 6.4e+02 0.4 0.0 1 23 295 321 295 321 0.85 9 20 0.93 91 3.1 0.2 1 23 331 353 331 353 0.93 10 20 0.00086 0.084 12.6 2.2 1 23 357 379 357 380 0.96 11 20 0.0018 0.18 11.6 4.4 2 23 454 475 453 475 0.96 12 20 0.016 1.5 8.6 0.5 1 23 486 508 486 508 0.97 13 20 0.19 19 5.2 0.4 3 23 517 537 516 537 0.97 14 20 9.7 9.5e+02 -0.1 0.6 1 11 576 586 576 590 0.87 15 20 2.9e-05 0.0028 17.2 0.2 1 23 625 648 625 648 0.97 16 20 0.16 16 5.5 0.2 1 23 652 674 652 674 0.96 17 20 0.043 4.2 7.3 1.4 1 23 682 704 682 704 0.96 18 20 0.0012 0.12 12.2 0.1 1 23 712 734 712 734 0.98 19 20 0.17 16 5.4 1.7 1 23 741 763 741 763 0.96 20 20 1.4 1.4e+02 2.5 1.2 2 10 810 818 810 819 0.91
Sequence Information
- Coding Sequence
- ATGAAGACGCACGACAACCAGAAGCCGTTCCAGTGCACGGTGTGCAACCGCGGCTACAACACAGCGGCGGCGCTCACCTCGCACATGCAGAACCACAAGAAGGAGCAGCAACAGCAGCACAAcggcagcaacagcagcagcaacacgCCCAGCCCGGGCAGCTTCCGGTGTCTGCAGTGCGGCGACTGCTTCCGCCGTCCCGAGGACCTGCAGGCGCACGGCATGAGCCAGCACGGGGCGGAGCCTGCATCTCCTCCCGTGCGAGGGCTGCTGGGCGGACTCATGCTGGCTGACTCGCCGCTGTCCAAGTCGCCGTCCAGGCCGCTCGTCTTCCCCGCGCCCAAGCTCGCCTGCATCTACTGCACCAAGGACAGCTTCACCACCATGGAGGCGCTGCAGCTGCACGTGCAGGCCATGCACGGTAGCAGGGAGTGCGTGGTGTGGCAGGCGAACCAGTACGAGCAGGCGGGCACGCTGCTGTGCAACCAGTGCGGCGCGGCGCTGCCGGACTTCGAGTCCTTCCGCTCGCACCTCAAGTCGCACCTGGAGGAGGCGGGCCTGGGAGACTCGCTGGCCCAGGCTGCGAGGCCCGGCACCCCCCAGCTGGCTGCTGGCCAGTGCTGCTGTCCCCACTGCGGCTCCGAGATGCCGTCCCCGGAGGCGCTGGAGCGACACGCCGCCTCGCACCTGCTCGCCACGGCCACCGAGTACGGCTGCCCCAGCTGCCTCAAGCTCTTCGCCAAGCCCGACGAGCTGCAGAAGCACCTCATGGACATACACGCCCACCACCTCTACCGCTGCTCCCTCTGCAAGGACATGTTCGACTCCAAGGTTGCCATACAGGTGCACTTCGCAGTGAAGCATAGCAACGAGTGCAAGCTGTACCGCTGCACGGCGTGTCCCTCGCCCGCCGCCGTCTTCCGCTCGGAGGCGGACTTCGGTCTGCACGTGCGTGCCAGCCACCCGCTGTCGGCGCCGCCGCCGCAGCCCTTCCGCTGCCTCTTCTGCCGCCTCGGCTTTCCCACCGAGCTTGAGCTGCAGTTCCACCTCGCCGTCCACTCCAAGCAGTTCCGCTGCCCCGTCTGCCAGGAGGCCTTCCACGTCGAGTTCCTGCTCGACAAGCACCTGCAGACCCACCACGTCTCCTCGCAGGTGATGAGCAGCTGTCCGACGAACGGGCTAGAAGGCGCGAGCCAGCAGCAGAAGTCGCCGAAGAGCAAGTCAGGCGGTTGTGAAGAGGCCGGAGGCGGGGAGGAGGCGGTGGGCGACGCGGAGCCGTCGGTACACCGGCGCCCGGCGCACCAGGCGAAGGCGGCGCCGGCGGCGGCCAAGGGCGCCGGGGGCGGCCCCGTCAGCCTCCACTGCGCCTACTGCAGCGAGAACTGCAAGTCGCGCACCGAACTCGAGAACCACATGAAGAGTCACTCGCAGGGCGCAGGCGGCGGGCCGGGCAAGCACAAGTGCAACATCTGCGACGAGCTGTGCCCCTCAGCGGCCGTGCTGGCCGAGCACAAGCTCACGCACTGCAAGGTGGTGTCGGGCAACGCGTGCACCCAGTGCAAGGCGACGCTGTCCGGCGAGGAGCAGTTCTTCTCGCACCTCCAGCAGCACGCCGGCTCGGCGTCGCTGCCGGCGCCGTGCGTCGTCTGCCGCCAGACGCTCGTCTCCGACATCGAGGCCCGGCTGCACGCGCGCTTCCACCTCGGCAGCTCGGCCGAGCCCACCCACCAGTGCTGCCTCTGCCTCAAGCACTTCGAGCTGCAGGGCCTCGTCGTCGCGAACCGCCCCAACGGAGGGGTGCACACCCCTAGCTACGTCTGCCAGGACTGCTACCTCTGCCACAGCAAGTCGTCGCCCGCGCACGAGCAGGCCTTCCGCTGCCCCGAGTGCCACGTCAAGTTCGAGAGCAACGCCGCCTTGGAGTCGCACCTCGTCACCGTGCACAGGAAGACCTACCAGTGCATCAAGTGCCAGGTGAGTTTCGAGACTGAGCGAGAGATCCAGCTGCACGTGGCGTCGCACCTGCTGACGGAGGGCAGCAGCCACGAGTGCCACCTCTGCCGGCGGCTGCTGTCCACGCCACTCAAGCTGCAGGCGCACCTCATCGAGCACACGTTCGCCGGCTGCGGCAGCTACACCTGCTACCTGTGCAGCGCCGTCTTCACCGCCGCGCAAGGCCTGCAGCAGCACATGCTGGAGCATGGCCTGGCCGCGCGGCCCTACGACTGCTCTCGCTGCAGCCTGCGCTTCTTCTTCCGCGCTGAGCTCGACAACCACAGCTACACTCACCTCGAGGACACTAAGAGCGCCTTCTACCAGCAGCTGGGCGCGAACGGCTCGCTGGAACCGGCGGAGCTGCAGTTGTACCGCGCGCTGGGGGCGGACGCCGCCGCCAAGGCGTACGGCAAGGGCAAGGGCAAGCCGGCGCGCTGCGGCGAGTGCGGCAAGGAGTTCGNGTTGATCCCTCGAGTTGGAGATCGAACCCACGGCGTCTGCGAACTATTCCCTCCtcactctttaaaataa
- Protein Sequence
- MKTHDNQKPFQCTVCNRGYNTAAALTSHMQNHKKEQQQQHNGSNSSSNTPSPGSFRCLQCGDCFRRPEDLQAHGMSQHGAEPASPPVRGLLGGLMLADSPLSKSPSRPLVFPAPKLACIYCTKDSFTTMEALQLHVQAMHGSRECVVWQANQYEQAGTLLCNQCGAALPDFESFRSHLKSHLEEAGLGDSLAQAARPGTPQLAAGQCCCPHCGSEMPSPEALERHAASHLLATATEYGCPSCLKLFAKPDELQKHLMDIHAHHLYRCSLCKDMFDSKVAIQVHFAVKHSNECKLYRCTACPSPAAVFRSEADFGLHVRASHPLSAPPPQPFRCLFCRLGFPTELELQFHLAVHSKQFRCPVCQEAFHVEFLLDKHLQTHHVSSQVMSSCPTNGLEGASQQQKSPKSKSGGCEEAGGGEEAVGDAEPSVHRRPAHQAKAAPAAAKGAGGGPVSLHCAYCSENCKSRTELENHMKSHSQGAGGGPGKHKCNICDELCPSAAVLAEHKLTHCKVVSGNACTQCKATLSGEEQFFSHLQQHAGSASLPAPCVVCRQTLVSDIEARLHARFHLGSSAEPTHQCCLCLKHFELQGLVVANRPNGGVHTPSYVCQDCYLCHSKSSPAHEQAFRCPECHVKFESNAALESHLVTVHRKTYQCIKCQVSFETEREIQLHVASHLLTEGSSHECHLCRRLLSTPLKLQAHLIEHTFAGCGSYTCYLCSAVFTAAQGLQQHMLEHGLAARPYDCSRCSLRFFFRAELDNHSYTHLEDTKSAFYQQLGANGSLEPAELQLYRALGADAAAKAYGKGKGKPARCGECGKEFXLIPRVGDRTHGVCELFPPHSLK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -