Basic Information

Insect: Clitarchus hookeri
Gene Symbol: -
Assembly: None
Location: NQII01002415.1:81522-139251[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.57 56 3.7 0.1 1 23 477 499 477 499 0.89

2 17 2.1 2.1e+02 1.9 1.4 3 19 517 533 517 536 0.90

3 17 1.3 1.2e+02 2.6 0.5 2 23 544 565 543 565 0.87

4 17 0.18 18 5.3 3.7 2 19 572 589 572 594 0.91

5 17 0.00015 0.015 15.0 0.6 1 23 600 622 600 622 0.97

6 17 0.00014 0.014 15.1 2.3 1 23 628 650 628 650 0.98

7 17 0.00015 0.014 15.0 2.1 1 23 656 678 656 679 0.96

8 17 0.00044 0.043 13.5 2.8 1 23 694 716 694 716 0.98

9 17 0.006 0.59 10.0 0.4 2 23 737 759 736 759 0.93

10 17 0.23 22 5.0 4.3 1 23 765 787 765 787 0.98

11 17 2.4e-06 0.00024 20.6 0.2 1 23 808 830 808 830 0.98

12 17 0.00041 0.04 13.6 3.4 1 23 836 858 836 858 0.97

13 17 6e-07 5.9e-05 22.5 1.6 1 23 864 886 864 886 0.97

14 17 0.0028 0.28 11.0 0.8 1 23 892 914 892 914 0.97

15 17 0.0048 0.47 10.3 1.8 1 23 920 942 920 942 0.96

16 17 4.2e-07 4.1e-05 23.0 0.9 1 23 948 970 948 970 0.98

17 17 1.9e-05 0.0018 17.8 0.5 3 23 978 998 977 998 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.57	56	3.7	0.1	1	23	477	499	477	499	0.89
2	17	2.1	2.1e+02	1.9	1.4	3	19	517	533	517	536	0.90
3	17	1.3	1.2e+02	2.6	0.5	2	23	544	565	543	565	0.87
4	17	0.18	18	5.3	3.7	2	19	572	589	572	594	0.91
5	17	0.00015	0.015	15.0	0.6	1	23	600	622	600	622	0.97
6	17	0.00014	0.014	15.1	2.3	1	23	628	650	628	650	0.98
7	17	0.00015	0.014	15.0	2.1	1	23	656	678	656	679	0.96
8	17	0.00044	0.043	13.5	2.8	1	23	694	716	694	716	0.98
9	17	0.006	0.59	10.0	0.4	2	23	737	759	736	759	0.93
10	17	0.23	22	5.0	4.3	1	23	765	787	765	787	0.98
11	17	2.4e-06	0.00024	20.6	0.2	1	23	808	830	808	830	0.98
12	17	0.00041	0.04	13.6	3.4	1	23	836	858	836	858	0.97
13	17	6e-07	5.9e-05	22.5	1.6	1	23	864	886	864	886	0.97
14	17	0.0028	0.28	11.0	0.8	1	23	892	914	892	914	0.97
15	17	0.0048	0.47	10.3	1.8	1	23	920	942	920	942	0.96
16	17	4.2e-07	4.1e-05	23.0	0.9	1	23	948	970	948	970	0.98
17	17	1.9e-05	0.0018	17.8	0.5	3	23	978	998	977	998	0.95

Sequence Information

Coding Sequence: ATGACTTCCGAGGGTGGATCCACAGGGGACGTGGCAGGTGATGGCACGAGTGCTTGCAGCGACGCCGTCGCCTCCACCGCTGCCGTTCAGTGCGAAGGCAAGCAGGCTGAGAATGGCGCCGCCGCAAGCGCAGATACTCCAGACGGCGCGGCACCGCTGCAGTGTTTCATTGCGGACTGCCCGAGCAACAGTGCCGCGCACCGCAACAAGGTGTTCTTCAGGCTACCTGCTGAGAAAGACAGGTGTCAACAGTGGCTCAAGATTTGTAAACGAGAGGATTTGATAGGTAAACCCGCATCATTCAGTAGCGGATGCTTCATCTGCTCCAACCATTTTGTGAAGGATCATTTTAAAGATGCATCAAAAACAATGCTGGAGAATCTTGCCGTACCAACTATTTTTGACACGGTGTGTGTCAGCGAAACAGATCAGGAAGAAGGAGGCAATGAAAATGTGGAGTACGAGGTGGTTGAAACAGACGAGGAATGTGAAGGTGACAACGATGATGTTAGCAGTCAGCAGTTATGCAGGCTCTGTGGCTGCCATTCTCAAGATGTTATCTACATCTTCAGTTCCACTGGAAGTAGTCTGAAAATTGCCAgcaaaattaacagtttattgCCAAtcacaGTTGTCATCAGCGATCATCTTCCTAAGCAGATATGTGTATCTTGCCTTAACAAACTGGACACCAGCAAAGACTTATTTGAAACGTGTTTAAGGACTGACGAACATTTGAGATGCTTGGCAAGGAAGAAATTTTTCAAATCACATCTCTGCGAGGATGGGCATGTGAACTCTTTCCATGTTCAACAAAGTGTTAAAAAGGGAAATGTGGAAATTACTGACAACAGTTTGAAACATCCAGATTTACTTTCAACTAATGATCACCCTGCAAAAATACCACCAGGTTGTGATAGTAAGAGTGTAGGAAACTGTGTTATACGTAGTGATGATGTGTTTAGTGATTCGTATGTGTGTCCATTTAACTGTGGAGGTGTAATGGTTATAAAAGGTACAAATGTTTGccgtaataatgaaaataaagatgtGACAAAAGATTTTGAGGCTACGTGTGAAAATATAGTAATTCATACAAATGAATCTGATaacattttagttacaaaaaatagtGCATCTATGCCAGAGATTCCTCCAAATGTTGTATATGAACTAAGAGACGTTCAAGGCCGCAAGTACATGATGTCGGGCACAGTGCCAGAATGGTGGCACAAAGATGCCAAcattgataattttgaaataatcatcAACACATTGGATCCAAATTTCAAACTTGCCGATGACGCGGCTCCTGCGGAAGTGAACAAAGACAAAGCAGTCGGTGCCAAAGAATATCAAATGTGTAATGAAACAGGCCCAAACTTAGAACTTTTAGCAGAACACTCCAAGGACCATGCTGATAATACATATCTTTGCACCTTGTGTATGGTTCGGTTTGACAGTCCAGCAGAGTTAGCCTCTCATAAGGTGGGCCACAGAGGAACTGGTAAAAAGATGACAAAGATTGCAGGTTCTAGGAGATTAGGATGCTCCATTTGTTTGAGGAAGTTCAACAACGAGAAGACGTGGAGAGGACATTCCTGTATTCCCACCGAGTCCAAATCAATTCAGTGCCCTGTCTGCATGAAAGCATTTCAAAATGAGGAACGTTTGTCATTCCATCAAAAATTTCACAATGGTGCTAAACCAAATTACTGTGAGAAGTGCTCGAAGCATTTTGATAATGAAAGTTTACTGTATTACCATTGCAGCTTAGTACACGAAGGAGATAGGCCGTACGCCTGCGACCTTTGCAAAAAGCGTTTCTTCTCGAACGCGAGGCTCATCGCTCACAGACGCGCACACACCGGAGACCGGCCCTATGAATGTAATCAGTGTAAAAGTAGGTTTTACAACCAAGAGACGCTGAAGAGTCATCAGGTTACGCACATGTCGGTCAAGCCATTCCAGTGCGAGCTGTGCGGAATACTGTGCGGGCGGAAGAGCTTGCTCAGGCAGCACATACAGGTGCATCACCTGACTCCGGACCACTTGAGGCGCGGACATTCGTTGATCCATTACCATTGCAAGTTGTGCGACAAGACTTTCACTGGTTCGCGGGATGTACTCACGCACAGAGACACTCACTGGCGCTTAGATAAACAAGCTCCGGGTGAAATTGGATCGAAGGTGCCTGCACCCCCTCTTGTCTGTGAATTCTGTTCAGAATGGTTTTCTGATCTGAGTCTCTTGACCAGACATCGTAAAGATTCTCACGGCGATGAGAAACCGtatatttgtagtgtttgtaaattttcCTCGCACACACTTCACGAGGCACGTATCCATAGGAGGACTCACACCACGGTTGATGGGGACCCCGAACTGACATCCGAAGATGTCGCAgccaaagaaaatacttttgtgtGCGAAGAGTGCGGCATGCAGTTTTCTGGTGTGGTGAATCTTCGGACTCACATGAAGACCCACAAACAGGAACCGTCGTACAAGTGTGACGAGTGCAGTCACTCTTTTCCCAACAAGCACAAACTGGCAGTACACTCGAATCTCCACTCGGGAGAGAAGCCATTTACTTGTCAGCAGTGTGGCAAGCGATTCTCCCAGAGTTCAGCACTGCACATTCACATTCTCCTGCACACCGGGGAGAAGCCACACCCGTGCGATCTGTGCGGAGCGACGTTCCGCATCAAGGCAGACCGTGACAATCACCGCCGTACCCACACGGGAGAGAAACCGTACCGCTGCGAGTATTGCTCCAAAGAGTTCCGTACAGGCCAGGTGTACTATCAACATCGAATGATTCACACAGGAGAACGACGGTTCCCATGTGATGTGTGCGGGAAAGCATTCAAGCGTTCTCACACCCTGGTTGTACATAAGCGCATACATACTGGCGAGAAGCCCAACATTTGCGACATCTGCGGCAAAGGGTTCCGGCAGCGTACGGACATGCGCAAACACAGGGCGCTTCATGCTCACAGATGA
Protein Sequence: MTSEGGSTGDVAGDGTSACSDAVASTAAVQCEGKQAENGAAASADTPDGAAPLQCFIADCPSNSAAHRNKVFFRLPAEKDRCQQWLKICKREDLIGKPASFSSGCFICSNHFVKDHFKDASKTMLENLAVPTIFDTVCVSETDQEEGGNENVEYEVVETDEECEGDNDDVSSQQLCRLCGCHSQDVIYIFSSTGSSLKIASKINSLLPITVVISDHLPKQICVSCLNKLDTSKDLFETCLRTDEHLRCLARKKFFKSHLCEDGHVNSFHVQQSVKKGNVEITDNSLKHPDLLSTNDHPAKIPPGCDSKSVGNCVIRSDDVFSDSYVCPFNCGGVMVIKGTNVCRNNENKDVTKDFEATCENIVIHTNESDNILVTKNSASMPEIPPNVVYELRDVQGRKYMMSGTVPEWWHKDANIDNFEIIINTLDPNFKLADDAAPAEVNKDKAVGAKEYQMCNETGPNLELLAEHSKDHADNTYLCTLCMVRFDSPAELASHKVGHRGTGKKMTKIAGSRRLGCSICLRKFNNEKTWRGHSCIPTESKSIQCPVCMKAFQNEERLSFHQKFHNGAKPNYCEKCSKHFDNESLLYYHCSLVHEGDRPYACDLCKKRFFSNARLIAHRRAHTGDRPYECNQCKSRFYNQETLKSHQVTHMSVKPFQCELCGILCGRKSLLRQHIQVHHLTPDHLRRGHSLIHYHCKLCDKTFTGSRDVLTHRDTHWRLDKQAPGEIGSKVPAPPLVCEFCSEWFSDLSLLTRHRKDSHGDEKPYICSVCKFSSHTLHEARIHRRTHTTVDGDPELTSEDVAAKENTFVCEECGMQFSGVVNLRTHMKTHKQEPSYKCDECSHSFPNKHKLAVHSNLHSGEKPFTCQQCGKRFSQSSALHIHILLHTGEKPHPCDLCGATFRIKADRDNHRRTHTGEKPYRCEYCSKEFRTGQVYYQHRMIHTGERRFPCDVCGKAFKRSHTLVVHKRIHTGEKPNICDICGKGFRQRTDMRKHRALHAHR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00343690;
90% Identity: iTF_00343690;
80% Identity: iTF_00343690;