Choo006109.1
Basic Information
- Insect
- Clitarchus hookeri
- Gene Symbol
- -
- Assembly
- None
- Location
- NQII01007892.1:20712-49566[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00036 0.035 13.8 0.2 3 23 138 158 136 158 0.96 2 10 0.00013 0.012 15.2 0.4 2 23 165 186 164 186 0.96 3 10 2.6e-09 2.6e-07 30.0 4.5 1 23 192 214 192 214 0.99 4 10 1.2e-06 0.00012 21.6 2.3 1 23 220 242 220 242 0.98 5 10 0.00042 0.041 13.6 0.1 1 23 248 270 248 270 0.98 6 10 0.00021 0.021 14.5 1.5 1 23 276 298 276 298 0.98 7 10 1.7e-06 0.00016 21.2 3.1 1 23 304 326 304 326 0.97 8 10 0.001 0.1 12.4 6.9 1 23 332 354 332 354 0.97 9 10 2.7e-05 0.0026 17.3 5.8 1 23 360 383 360 383 0.97 10 10 0.012 1.1 9.1 0.7 1 23 389 411 389 411 0.97
Sequence Information
- Coding Sequence
- GAGGTAGATGATGAAAAGTCATACGGTTATTTAATCGAGAACCCACTTGAAGAAAGATCAAGTACTGTTAAgGAGGTAGATGATGAAAAGTCATACGGTTATTTAATCGAGAACCCACTTGAAGAAAGATCAAGTACTGTTAAgAAAAAGAGAGGACAAATAGTGGTTGTGTTAGAGAGGTGGAAACAAGAGAGACAGCTGGGGCTGAACCAGCAGAATTGGACATGGAGGTGGAAGAATCATCAGATGAAATGGAAGgggaagaagaagaggaagaagaagatgAGGAAGAAGAGATTTCCACAGATCTTTCGGaaacaagcaaaaataatttttcagcagCAAGATAAGAAGAAGGACCCTGTTGGTTCATTGCCTTTCGAACTGGAGCCTGGGGATAAGCCATATGGGTGCTCTGAATGCAACGAGACCTTCATCCTGTTGAAAGAGCTGAAGAATCACCTGCTCCTTCACACAGACCACGACAACATTGTGTGCAATATCTGCGGGGTCGAGTATGACCATCGCACTGTACTAAAGAAGCACATGATGGACCATGCTATTGTGAGACCATACCGGTGCTCTAAGTGTGGCAAGACATTCGCCAACAAACACAACCTCAAAAACCACATGATGACACATTCGGGTGACAAACCTTTCACCTGCCACATGTGCGACCTCAAGTTCACTGCAAGCAGCAACCTCAAACGGCATGCGATCACACACACTGGTGACAGGCCATACGTGTGCGTCATCTGCCTGGCATCATTTGCTCAGAAGACCTCTCTGGTCACGCATGCAACCACCCACAACAAAGAGAAATCCTTTATGTGTTATGTCTGCAAAGGGACTTTCACTCGTGTGCAGACACTTAAACAGCACCTGCTCACCCATCAAGGTGAGAAGCCATACAAGTGCGAGACATGTGACTCGCGCTTCTCTTACAAGAGCAACCTGCATCGCCACATGGCTGGGCATACAGGCCACAAACCACACGTCTGCTCTCTATGCGGTGCTCGCTTCCAGTACCGGTGCAATTTGCGCCACCACATGACATCTCACAATGCCAACACGCCCTACACCTGCTGCTTCTGCGGCACTAACTTTACCCGCTCCCACAGCCTGCGAGAGCACATCAACTCCTCGCACCCTGGTGAGACCGAATTTCACTGTGGTACATGTGGAAATAGGTACACAGAACTGGAGCTCATGCTGGTGCACATGCTGAACCACACCAAGACATAA
- Protein Sequence
- EVDDEKSYGYLIENPLEERSSTVKEVDDEKSYGYLIENPLEERSSTVKKKRGQIVVVLERWKQERQLGLNQQNWTWRWKNHQMKWKGKKKRKKKMRKKRFPQIFRKQAKIIFQQQDKKKDPVGSLPFELEPGDKPYGCSECNETFILLKELKNHLLLHTDHDNIVCNICGVEYDHRTVLKKHMMDHAIVRPYRCSKCGKTFANKHNLKNHMMTHSGDKPFTCHMCDLKFTASSNLKRHAITHTGDRPYVCVICLASFAQKTSLVTHATTHNKEKSFMCYVCKGTFTRVQTLKQHLLTHQGEKPYKCETCDSRFSYKSNLHRHMAGHTGHKPHVCSLCGARFQYRCNLRHHMTSHNANTPYTCCFCGTNFTRSHSLREHINSSHPGETEFHCGTCGNRYTELELMLVHMLNHTKT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -