Choo000595.1
Basic Information
- Insect
- Clitarchus hookeri
- Gene Symbol
- -
- Assembly
- None
- Location
- NQII01001695.1:826574-855144[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0077 0.76 9.6 0.8 2 23 570 591 569 591 0.96 2 12 5.1e-08 5e-06 25.9 1.7 2 23 598 619 597 619 0.97 3 12 6e-05 0.0059 16.2 0.7 1 23 625 647 625 647 0.98 4 12 0.0043 0.42 10.4 3.9 1 23 655 678 655 678 0.97 5 12 0.00021 0.021 14.5 3.0 2 23 688 708 687 708 0.96 6 12 2.7e-05 0.0027 17.3 0.8 1 23 712 735 712 735 0.94 7 12 6.8e-05 0.0067 16.1 5.8 1 23 741 763 741 763 0.97 8 12 9.2e-05 0.009 15.7 0.9 1 23 771 794 771 794 0.89 9 12 4.9e-06 0.00048 19.7 1.6 1 23 802 824 802 824 0.98 10 12 7.1e-06 0.0007 19.2 2.2 1 20 830 849 830 851 0.93 11 12 0.0016 0.16 11.7 8.4 1 23 859 881 859 882 0.95 12 12 2.4e-05 0.0024 17.5 1.9 1 23 904 926 904 926 0.98
Sequence Information
- Coding Sequence
- ATGGGTGGCTGGATGCCGGAAGTGGCCAAGATGGCCCTGTACATGATGTTCCCAGTAGGCATGTTCCACTTCTTCAACCAGCCCGAGTACTTCGAGGAGTGGGTGGTGAAAACACGGCGAGCCGTATTTCCCCCCGAGAGCAAGACGCACCGAGAGGAGCTGGCAGGGTGCATCCGCAGGGCACACGAGAAGCATGACCAGGAGCTATTGCATCCTGCCATGGCTGTGGCAGCAGACTCATCGGTAGTGGAGATTGTGTGCGAGGTGCATTTTGCACACCTCACTTCGGCACTGAAGGAACTTGCTATCAGCGGTGTGCTGACGGACATCACGTTTGTCTGCGAGGATGGCACGTTGCAGGCACACCAGGTGGTGGTTTCTGCGTTTAGTGGCTCACTGCGTCAGATCAGCTCTGGCGGTGGCCATAAAAGCTGCGTGTTCATCATCAATGCCAAGAAGAAGATTGTGCAGGCCCTGCTGCACTTCCTGTATCAGGGATACACCTGCATCAGCAAGCATGAGTTTGAGGCACTGACAGAGGCAGCCAGCACCTTGAAGCTCGACTGCTTCACGCAGACCCAGTTGGAGTATGTAGGTGACAACTTGTACCTGAGGTTCCCAGATCACGAGCGCCTCCTCCGAGAGAACTTGGAGCATCTGCGCTCCAGCCGGACTCTGTGCGATGTTGTCTTTGTAACGGAGGAGTTCTCGCGGGTATACTCCCATGCCTGCATAATGGCAACATGTAGCAGAATGCTGCAGAGTGTGTTGATGAACCACAGACGCAACAATGATGGCCCGTGTGTTTTGGTTCTTGAGGGTGTGAAACTGGAAcactttttgccaatcctcgactTTTGCTATCGTGGCTCTGCTTCAATGACTCACGAGATTGTTTGCGAGACGCACTGCGTTGCCCGTCTCATGGAAATGGATTACATCTGTGAGATATTGGTCACTGTAGATCCTCCTCTTTCCATCACAACAAACGCAAGCAGTCCCAAGTCACAGGTTACAAACACGGTGAGGCTGATGGATGTGATATCGGAGCCAGGAAATGGGCGGGACAGCTTCCGCAACTTCCAGAGAATCTTATCGCATCTGGCAAGTACGGAGAGCCTGACGGACGTGACTTTCCTGAAGGACGGTCGCTGCTTGCGAGCGCACAGTGTATTGTTGTGTGCATTCGGGCCGTACTTCAAGGAACTGGAGGAGAAGCTGGGGCACGATCTGAAGGAGGCTGTGGTGCTTGTGAGGAGTCTCTCAGGCAGCCTGCTGCGGTCCTATCTGGACTACTTGTACCGTGGTGAAGCACAGTTCAGTGGCAGCCCCAAGGAGTTCTGTGCACTCATGTCCAACTGGATTGACTTCAGCCTCCTGCCTGCTGATGACTCTACGTTGCTGCCATGTGACGGCATCTCGGCAGAGAAGACTTGTGAGGTACTGGGGCTCTCTCTTGACAACATAAGCTGCGTGGTTGAGCTGTCAGAGGAGTTTGATTTGGGTCGGGATGCGGTGCTCATACAGGGAGACAATGAGACTGTGGAGTTGGTGCCTCATCAGATCAGTCAGCATGTTGCCGAGGCAAACCAGGAGTGTAAAAAGACGGAGGATAACATGACTCAATGGGTTGAACTAACTACGCTGAAAGTGGAGGAAGGTGATGCACGCTCATCTGCAAAGGGAACTCTCAGCGTGGTCCCAAAAGTCTGCAGATTGTGCAAGGCGGAGTTCACATCCCTGGTGGATTTCAGAAGACACTTCGCCACCCATCCAGAAACCAAGTGGGTGACGTGTAGCCACTGCAACAAGACATTCTCGACAGCTGGGGAGCTGCGCGTTCACATGCGATCACATACCGAGCTGCGACCATTCCAGTGCAGTGTTTGTAACAAACAGTTTGCGGCCCGCAGTGTGCTGCGCAAGCACAGGCTTATCCACGACAATGATCCAGCCAAGGCGTATCGCTGCTCCATCTGTTCAAAGTCCTTCTTGCGGCGCCGCACTGGACTCAACCACCACATCAAAACTCACACCAGCCCAGATGAGCGCCGTAACTGTGTTTGTGAGGTGTGTGGCAAATACTTCACACGACATGCACTTTGGACACACATCAAGACTCACAAGAAGGTGCACACATGTACAACATGCGGGAAGAGTTGTGCGACACCAGCTGCACTTAAGGTACATGTGCAAGGCATGCACCTGGGAGAGCGTGAGCACACCTGCCACATTTGTGCCAAGAGCTTCAATGAGCGGCGCCACCTTCTGCGGCACATAAGGGCACATGACCAGGATAAGGACTACCAGTACTTATGCACCATTTGCAGCCGGATTTTCAAGACCGAGGACCAACTCAAGAAACACTCGCTCTTGAATCACAAGGCACCTGGAGATTTGCCGTACTCCTGCGAGATATGCTATAagtcattttccggccgcagcacaCTGATCTACCACCGGCGCTCCCACACGGGTGAGCGTCCCCACACTTGCCTCAACTGTGGAAAATCGTTCTCGCGGCCGGATGCTCTCAAGAAACATGAATGCTCTTGTCTGGAGGAGGACCCAGTTCACAAGTGCCCACATTGTGAGAAGACTTTCTGTAACACAGGTGCGAGGAAAGAACACATTAGGTTACATCATAAAGACTTTGTTTCGCAAGGCAAGACAGAGATACGTACTAAGGTGTATTCTGGTTCCCGTCCTTTCCGCTGTCTAGTGTGCCGCAAGTCATTCCGCTATCAAGACAGCCTGGACAAGCATGCCAAGATGCACGTGGCAAAGCTGGACACAGAGTCATCAGCATTACCTGACCATGACTATACAAATGCGCTCATCCTGGACTTCTTGGCTACTTGGAGAGGTAGGTTGTTTGCAGCACATATTCAATGCATTGCTGACCTCAACTTTCCCATCAACATACTCTGTTGCGTGGAGGAATACGTTGCCCATAATGTGGGACACCTGCCGGGCAAGATAATCGAATAG
- Protein Sequence
- MGGWMPEVAKMALYMMFPVGMFHFFNQPEYFEEWVVKTRRAVFPPESKTHREELAGCIRRAHEKHDQELLHPAMAVAADSSVVEIVCEVHFAHLTSALKELAISGVLTDITFVCEDGTLQAHQVVVSAFSGSLRQISSGGGHKSCVFIINAKKKIVQALLHFLYQGYTCISKHEFEALTEAASTLKLDCFTQTQLEYVGDNLYLRFPDHERLLRENLEHLRSSRTLCDVVFVTEEFSRVYSHACIMATCSRMLQSVLMNHRRNNDGPCVLVLEGVKLEHFLPILDFCYRGSASMTHEIVCETHCVARLMEMDYICEILVTVDPPLSITTNASSPKSQVTNTVRLMDVISEPGNGRDSFRNFQRILSHLASTESLTDVTFLKDGRCLRAHSVLLCAFGPYFKELEEKLGHDLKEAVVLVRSLSGSLLRSYLDYLYRGEAQFSGSPKEFCALMSNWIDFSLLPADDSTLLPCDGISAEKTCEVLGLSLDNISCVVELSEEFDLGRDAVLIQGDNETVELVPHQISQHVAEANQECKKTEDNMTQWVELTTLKVEEGDARSSAKGTLSVVPKVCRLCKAEFTSLVDFRRHFATHPETKWVTCSHCNKTFSTAGELRVHMRSHTELRPFQCSVCNKQFAARSVLRKHRLIHDNDPAKAYRCSICSKSFLRRRTGLNHHIKTHTSPDERRNCVCEVCGKYFTRHALWTHIKTHKKVHTCTTCGKSCATPAALKVHVQGMHLGEREHTCHICAKSFNERRHLLRHIRAHDQDKDYQYLCTICSRIFKTEDQLKKHSLLNHKAPGDLPYSCEICYKSFSGRSTLIYHRRSHTGERPHTCLNCGKSFSRPDALKKHECSCLEEDPVHKCPHCEKTFCNTGARKEHIRLHHKDFVSQGKTEIRTKVYSGSRPFRCLVCRKSFRYQDSLDKHAKMHVAKLDTESSALPDHDYTNALILDFLATWRGRLFAAHIQCIADLNFPINILCCVEEYVAHNVGHLPGKIIE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00343708;
- 90% Identity
- iTF_00343708;
- 80% Identity
- iTF_00343708;