Basic Information

Insect: Clitarchus hookeri
Gene Symbol: -
Assembly: None
Location: NQII01005051.1:9820-83549[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.014 1.4 8.8 1.2 1 23 230 252 230 252 0.92

2 12 0.042 4.1 7.3 0.3 1 21 257 277 257 281 0.90

3 12 4.4e-05 0.0043 16.7 0.5 2 23 307 329 306 329 0.95

4 12 6.8e-06 0.00067 19.2 1.2 1 23 335 358 335 358 0.95

5 12 0.00086 0.084 12.6 0.6 1 23 370 393 370 393 0.87

6 12 1.4e-07 1.3e-05 24.6 3.5 1 23 399 421 399 421 0.98

7 12 3.1e-05 0.003 17.1 0.3 1 23 427 449 427 449 0.92

8 12 0.00011 0.011 15.4 2.6 1 23 455 477 455 477 0.97

9 12 8.2e-09 8e-07 28.4 2.2 1 23 483 505 483 505 0.99

10 12 4.3e-06 0.00042 19.9 5.7 1 23 511 533 511 533 0.98

11 12 0.22 22 5.0 6.1 2 23 540 561 539 561 0.96

12 12 5.7e-05 0.0056 16.3 1.7 1 20 567 586 567 588 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.014	1.4	8.8	1.2	1	23	230	252	230	252	0.92
2	12	0.042	4.1	7.3	0.3	1	21	257	277	257	281	0.90
3	12	4.4e-05	0.0043	16.7	0.5	2	23	307	329	306	329	0.95
4	12	6.8e-06	0.00067	19.2	1.2	1	23	335	358	335	358	0.95
5	12	0.00086	0.084	12.6	0.6	1	23	370	393	370	393	0.87
6	12	1.4e-07	1.3e-05	24.6	3.5	1	23	399	421	399	421	0.98
7	12	3.1e-05	0.003	17.1	0.3	1	23	427	449	427	449	0.92
8	12	0.00011	0.011	15.4	2.6	1	23	455	477	455	477	0.97
9	12	8.2e-09	8e-07	28.4	2.2	1	23	483	505	483	505	0.99
10	12	4.3e-06	0.00042	19.9	5.7	1	23	511	533	511	533	0.98
11	12	0.22	22	5.0	6.1	2	23	540	561	539	561	0.96
12	12	5.7e-05	0.0056	16.3	1.7	1	20	567	586	567	588	0.94

Sequence Information

Coding Sequence: atgttatttgttcATGTTTATGGGTGGGTGCCACAGGTGGAAATGCTGCGGCGGAGTGAACGTGAGCGCCAACGTGCGGAGCAGGTTAGCGTGCTGGTCAGTGCAGAAACGTCTGTGCCACGCAGTGAGCAGACAGGCGAGCCTGATGACCCttgcaatcgcatcatcatacaAATAATGGAAGATGGCACTATGTTCACGACGGATCACGAGATGGCATTGAAGATGCAGGGCTTGGACAGGCCGCGGAAGAAGCGAGGGCGGCCGCCCAAGCCGCGGGTGCCGCCAGAGGAGGAGAAGAAAGACGAGGAGAAGGAGAATGAAAAGGCAGTGAAGGAGCCAGAGTCCCCCGAGGAGCAGCAGCAGGAGGTGGAGGAGACTGAGGAAGATGGGGACGGCAGGAGACGGCGCAGGAGGAAAGTGCCTGTACGATTCCAGGAGGCGCTACAAGGAAAGGAACTGGAGCGCATCTTCCGGGAGGAGGGCCTCATAAACCAAGATGAGCCGGAGGAGATGGAAGATGCGGATGTAGATGAAAAGGGAGAGGAAGCAGAGAACCTTGGTCAAGAAGAGGTGATCGGGCACCTGGAGACTCCTGAAGGGCAAGACCTGGGAGAGCTGGTGATAGTGAACCGCGGCAAGAGGAAGTATCGAGTGCGGAACGGCAAGCGACGTAACAAGTTGCGCTTTATATGCGAGGTGTGCGGACGGGAGTTCCAGCATCGTGGCCGCTACAGTGTTCACAGGGGCTACCACAGAGGAGTTGTTTTTGAATGCACTCCATGTAGCAAGAGGTTCATCTCCCGAGAGAGCATCAGCGTACATCAGAAAGGAACTGGCCACAGTGgagaagGTATCATAGAGGGTGCGAAAGAGTGCGATGCCGAGCGGGAAGCAGCAGCGAACAACTCGCGAGTGCAGTGCGAACAGTGTGATAAAACGTTCCAAACAAAGCAGAGCTATGAGGTGCACCTGAAAGCCATTCATGAGGGATGTAAGCCGTTTACTTGTGATGTGTGTGGTCGCATGTTCGCTTACCAGAACAGTCTCAAGAGTCACATCTTGGCCTGTCACGAGGACAAGGGAGGAGGTGACAAGGAGCGCAGGTTCCTGTGCGAGCTGTGCGACAAGTCATTCAACCACCCCAGCTCGGTGGTGTACCACAAGGAAGCAGAGCATAACAATGGCCGCCGCTTTGTCTGCAATAAGTGCGGCAAGAGCTTCAAGCACCGCCAACTGCTGCAGAGACACCAGCTCGTCCACTCAGATGATCGGCCGTTTGTGTGCAAGGCATGCGGAGCGAGCTTTAAGACGAAGGCCAACTTGCTGAACCACCAGCCGACTCACACCGGAGAGAAGAAGTATTTCTGCGAGCTGTGCGACCAGCAGTTTGCACACAAGACCAGCCTGACGTTGCACTACCGCTGGCACACAGGTCAGAAGCCGTATCAATGCCACGTGTGCAACAAGAGCTTCACCCAGAACGGCAACCTACAAGAACACCTGCGCATACACACCGGCGAGAAGCCTTACTGCTGCGACTACTGTGGTCGCAAGTTCACCACTTCTTCGCAGTTCAAGCTGCACGTGAAGCGGCACACCGGGGAGCGGCCGTGGAAGTGCGAGTTCTGTGGCAAGTCGTTCCTGCACAAGGACACGTGGCGGTGCCACACGCGGAGACACAAGGGGGAGCGGCCCTTCCAGTGCCAGTACTGCACCCGCAGCTTCACTGAGCAGTGGGCTCTCAAGAAGCACGTGCACCGGGAGAACCGAGCAACAGGGGAAGAGGGTGGCCTCACTGTGAACCGTACGGTGTGGAACATGATCCAGTCACAGCTGTCGAAGAGCGATGAAGGAGGGGAGGCAGGGGAGGAGTGCCAGGACAACATGCAGCAGATCATATACGTCACGTACCAGGACCCAGACGACCCTGACAACAAGACGCTGCACATTGTTGATGAACTGCCCCCCAGCGACCCCAAGCAGAAGCTGGATGTGAAGGCGGAGGAGAACGCAGCAGTGTCGAGGATAGAGCTGGCGTCCGTGCCAACCACACACCCCCTGCAGCAGAAGCTGGATGTGAAGGCGGAGGAGAACGCAGCAGTGTCGAGGATAGAGCTGGCGTCCGTGCCAACCACACACCCCCTGCAGGTCATGGACGAGGACGGGAACCCAATACAGTTGACCATGCACGACGGCCGCCAGTTGCAGATCACAACAACGGACGGGCAATCGCTGCAGGTGACGACCCTAGACGGACAGACTATCCCTCTGCAGCTCACTACGTCCGATGGCACCTCCGTCAACCCTGAGATCACCACCGAGATACACCCAGTCAGCATCGCCGCTACTGCTGCTGAAGCCCTGCTGCCAGTAGAACAGAAAGCACACGCGATGGAAAGTCAGAGTGATGGAGCCGACGTGTCTCAGCTGGTGGGAACTGAACAGACGTTCGAGTTCACGACCGAGGATGGGCAGAAAGTTCACTTTGTGACGACATACGGTGTGGACCCTGTGACTCTTGCGTCCGAGTACTTGTCTTCAGCTTCGTAA
Protein Sequence: MLFVHVYGWVPQVEMLRRSERERQRAEQVSVLVSAETSVPRSEQTGEPDDPCNRIIIQIMEDGTMFTTDHEMALKMQGLDRPRKKRGRPPKPRVPPEEEKKDEEKENEKAVKEPESPEEQQQEVEETEEDGDGRRRRRRKVPVRFQEALQGKELERIFREEGLINQDEPEEMEDADVDEKGEEAENLGQEEVIGHLETPEGQDLGELVIVNRGKRKYRVRNGKRRNKLRFICEVCGREFQHRGRYSVHRGYHRGVVFECTPCSKRFISRESISVHQKGTGHSGEGIIEGAKECDAEREAAANNSRVQCEQCDKTFQTKQSYEVHLKAIHEGCKPFTCDVCGRMFAYQNSLKSHILACHEDKGGGDKERRFLCELCDKSFNHPSSVVYHKEAEHNNGRRFVCNKCGKSFKHRQLLQRHQLVHSDDRPFVCKACGASFKTKANLLNHQPTHTGEKKYFCELCDQQFAHKTSLTLHYRWHTGQKPYQCHVCNKSFTQNGNLQEHLRIHTGEKPYCCDYCGRKFTTSSQFKLHVKRHTGERPWKCEFCGKSFLHKDTWRCHTRRHKGERPFQCQYCTRSFTEQWALKKHVHRENRATGEEGGLTVNRTVWNMIQSQLSKSDEGGEAGEECQDNMQQIIYVTYQDPDDPDNKTLHIVDELPPSDPKQKLDVKAEENAAVSRIELASVPTTHPLQQKLDVKAEENAAVSRIELASVPTTHPLQVMDEDGNPIQLTMHDGRQLQITTTDGQSLQVTTLDGQTIPLQLTTSDGTSVNPEITTEIHPVSIAATAAEALLPVEQKAHAMESQSDGADVSQLVGTEQTFEFTTEDGQKVHFVTTYGVDPVTLASEYLSSAS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -