Basic Information

Insect: Clitarchus hookeri
Gene Symbol: -
Assembly: None
Location: NQII01002092.1:125298-143649[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 22 0.00028 0.027 14.2 0.3 1 23 255 277 255 277 0.98

2 22 1e-05 0.001 18.6 2.0 2 23 283 304 283 304 0.97

3 22 0.01 1 9.2 0.4 1 22 310 331 310 331 0.95

4 22 0.0029 0.29 10.9 0.2 2 23 358 379 357 379 0.95

5 22 0.00014 0.014 15.1 1.1 1 23 382 404 382 404 0.98

6 22 0.0002 0.02 14.6 2.0 2 23 434 455 433 455 0.96

7 22 0.0022 0.22 11.3 1.8 1 23 461 484 461 484 0.96

8 22 1.6e-06 0.00016 21.2 0.5 1 23 529 552 529 552 0.96

9 22 5.6e-07 5.5e-05 22.6 4.3 1 23 558 580 558 580 0.99

10 22 0.37 36 4.3 3.0 2 23 588 609 587 609 0.94

11 22 0.0026 0.25 11.1 0.1 1 23 615 637 615 637 0.98

12 22 0.0015 0.14 11.9 2.5 1 23 661 683 661 683 0.98

13 22 0.00012 0.012 15.3 1.6 1 23 689 712 689 712 0.98

14 22 1.8e-05 0.0017 17.9 1.9 1 23 729 751 729 751 0.95

15 22 0.022 2.1 8.2 0.4 6 23 794 811 789 811 0.86

16 22 0.00055 0.054 13.2 1.1 3 23 875 896 874 896 0.95

17 22 5.4e-05 0.0053 16.4 0.4 1 23 1085 1107 1085 1107 0.93

18 22 5.6e-06 0.00055 19.5 0.6 1 23 1152 1174 1152 1174 0.98

19 22 0.00014 0.013 15.1 4.1 1 23 1209 1231 1209 1231 0.98

20 22 0.0011 0.1 12.3 2.8 1 23 1266 1288 1266 1288 0.97

21 22 0.0099 0.97 9.3 5.2 1 23 1320 1342 1320 1342 0.98

22 22 0.0044 0.43 10.4 5.6 1 23 1390 1412 1390 1412 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	22	0.00028	0.027	14.2	0.3	1	23	255	277	255	277	0.98
2	22	1e-05	0.001	18.6	2.0	2	23	283	304	283	304	0.97
3	22	0.01	1	9.2	0.4	1	22	310	331	310	331	0.95
4	22	0.0029	0.29	10.9	0.2	2	23	358	379	357	379	0.95
5	22	0.00014	0.014	15.1	1.1	1	23	382	404	382	404	0.98
6	22	0.0002	0.02	14.6	2.0	2	23	434	455	433	455	0.96
7	22	0.0022	0.22	11.3	1.8	1	23	461	484	461	484	0.96
8	22	1.6e-06	0.00016	21.2	0.5	1	23	529	552	529	552	0.96
9	22	5.6e-07	5.5e-05	22.6	4.3	1	23	558	580	558	580	0.99
10	22	0.37	36	4.3	3.0	2	23	588	609	587	609	0.94
11	22	0.0026	0.25	11.1	0.1	1	23	615	637	615	637	0.98
12	22	0.0015	0.14	11.9	2.5	1	23	661	683	661	683	0.98
13	22	0.00012	0.012	15.3	1.6	1	23	689	712	689	712	0.98
14	22	1.8e-05	0.0017	17.9	1.9	1	23	729	751	729	751	0.95
15	22	0.022	2.1	8.2	0.4	6	23	794	811	789	811	0.86
16	22	0.00055	0.054	13.2	1.1	3	23	875	896	874	896	0.95
17	22	5.4e-05	0.0053	16.4	0.4	1	23	1085	1107	1085	1107	0.93
18	22	5.6e-06	0.00055	19.5	0.6	1	23	1152	1174	1152	1174	0.98
19	22	0.00014	0.013	15.1	4.1	1	23	1209	1231	1209	1231	0.98
20	22	0.0011	0.1	12.3	2.8	1	23	1266	1288	1266	1288	0.97
21	22	0.0099	0.97	9.3	5.2	1	23	1320	1342	1320	1342	0.98
22	22	0.0044	0.43	10.4	5.6	1	23	1390	1412	1390	1412	0.98

Sequence Information

Coding Sequence: TTGGTGAGCTCGCAGGACGGGCTACCCACGGCAATATGCAAGGTGTGCCTGCAGCAGGTGAACCAATGGCACGACTTCAAGCAGGTCTGCGACTCCTCGCAGGCCACTCTGAAGCGGTGGCTGTGCGAGACCCAGGCCACCTCCGTCGCCAGCCCGACCACCGCCGACACCACCACTGCCGACGCCACGACCGTCCCCAACACCTCCTCCAACACCATCACGACTGCAGACTCCACTGTCATCTCCATCGACACCAACCAGGTTGTGATAAAGCAAGAGCCGGTGGACGTGGACGAGGACTCTGTGTTCCAGGAGGACGTGCAGGATGTGTGCGGTGATTCGCGCGAGTATTGCATGTTGGATGTGAAGCAGGAAGAAATAGAGGTGAGCGAGGACAATCCTGTGGAGGCTCACGATGGTTTGGTTACTGCGGACCCTCTGGACGTTCCCGCAGGCAGAAACCGCAAAAGCCCCTTGCAAGAGGATCATCATTTCTACAATTCAGCTGTTCTCTTGGATGACAACGGCAGTGCATTCGAGTGTGAGAATGAAGGAGAAATAGACTTTATGAGGGTGAACCATGGCGGGGCGATATCTGTGCAGGGTCTGTTCGACTCCAGCGAGTCTGCAGCCGTGGCGAGTAAACCCACCCAGCCGAAGAAGAGGCGCAGGTTCTTCAAGAGAATCACGttcaagaagaaaaagaaaaagtcgCCACCCATATGGACCCCGCAAGAAGTCCGGATGGAGCCTCACCATGGCTACATGTGCAGGAAGTGTGGGGAGAGCTTTCCCGAGCTGTGGCTGCTGAAGTCTCACGAGAAGTCCCACGGCAGTGCCGAGAACGTGTGCACGGTCTGCGAGAAGCGGTTCTCCAGCAAGGGCTGCCTGGTGCGCCACATCCGCCTCCACACCCACCAGATGCCGTATTCGTGCGCCAAGTGTTCCGCTTCCTTCGCGAACAAGTTTGCTTACTTGCAGCATCGCCAGACCAGCTGCCCGATCGAGGAACCTCCGCCAGCACCCCCGGAGGCTGCCCAAACATCTACGGACAATCAAGAAAGCAAGTTGTCGTGCTACATCTGCCAGGAGATGTTTCCGTCGGTTAATCAGCTGATTCAGCATCGGAAGGGCCACGTAAACTACTCTTGTCCGAAATGCAAGAAACACTTCGCCGGAGGGAAAGCTCTGAGCAACCATTTACGTGTTCACAAGCTTGGAGCAATGATGGCCCACAAAATGGTTCATGCGAAAGCTCCCCCGGCGGTCATGCCTGTGCCTGCCATCCAAAAAACCTCAAGTTGTAGCGTGTGTAACAAGGTTTTCTCCAGTGTTGGTTTGATGCATCGTCACATGACGAAGCACACCAAATTGAAGCAGTTCACGTGCAACATATGTCATACATCGATGGGTTATGCTACTTCACTCCGCAAACACATGAAGGGCATGCACAACATCGACATTGACCACAGCAGCATCAAACCTGATAACATTCCCTTAAGTTATGTGCCGAGTACACAGGATCTCTCCCCCCTTGTGATTAAGTCGGAGGCTTTGGAAGCCCCGGCAGAAACTGTGGATGAACATGTTTGCAATATCTGCAACAAGGTGTTCGGTCAAAAGTCACTGCTGGTGAACCATCTGAAAGTTATTCATATGGGAGTGAAAGCATATAAGTGCACGACATGTAGCAAGATGTTCACCTCAAAGCCACATTTGGTGAGACACATGCAGACACACAAGGAGGGCCAGTTTGCTCTGACTTGCAAGATATGCTGCAAGAAGTTTCCAGACGTGAAGACCTACAACAAACACAAGGGAGTCCACACTCGTTACCGTTGCTACACCTGCGGCATCTGTTCCGAGTCCTTCAACGGCATAAACTCGTGGCGTGCCCACCAGGTAACGCATCTCCCTGATTTTGGACATGCGCCCATGATGAACATCGCCAAGCAGGAGGTTCAGACTTCCGCCGGGAAATACACCTGCCGACTCTGTTTCAAAATGTACAGATCGCGGGCAGAGCTCTATGAGCACAAGAAGATGCACATCAAACTTAAGATCTACTCCTGTACAGAGTGCAAGAATTCTTACAATAGTCTCTCCGCCCTTATGAAGCACAAGCGCAGAGAGCACTCGAGCGATGAACACTACTTTGATATGGGTCTGATGTCGGAATCCACCCACGACTGCGATTTCTGTGGGAAGTCGTTCGGCAGCTCATCATCGCTCAGCAAGCACAAGCTGGTCCATGCCGAGCTACTGTACACGAACGTGACTCGCGTGGACCCGCCGGCCCGCCGTAGGGTGCTCAAGACGTCGGAGACCGTGGATTCTGCCTTGCCGGTGCTGCCCAACGATCCTTTCCTCTGCGTCCCTTGCAACCGGTCTTTTACGGACCTGATGTCGCTGAAGACGCACCGGGGCTGGCACAAGAGGAAACACGCCAGTCCTTTCAGCATGCTCCAACTAAAGGCTTTTGGCACACAGTCACCACCCAAGGCTCCAGTTAGTCCACCCAAGGCTTCAGTCAGTCCACCCAAGGCTTCAATCAGCACACCTACCAAGGAGGCTTTCAACCCgccaagaagtgcaaaggcattCCCCGAGGACAATTTCTGGTGCGTAGAATGCAACAAGGGGTTCAAGAAGAGCGTGAATCTGTCACGGCACTTCAAACTGAGTCACAGGCACAATGTGAAAGCACAGGGTCAGGCAGGAAGTATGGATGACTCGCCAACCAAAGATGGCTTCGACGTTTTGCCTGTAGAAGTGCAGCTTGTGGAGCATGAACCGACTGACAATGATGCCTCAGAAGTGCTTGCGAATGACTCCGCCGCTGATAGTGCGTCTGCTGATTCAGTTTTAGATGATGCACCAGCTGTTGCAAGTAATTCTGCTTCAGATGGTGCATCTGCAGATGATTCAGTCATTAGTGAAGAACCTGCCAAAGATTCATCTACAGCCCTGATTCTAGAAAATGGTGTGCCTACAGACAATTGCGCTATAGATGATGCATCAGCAAATAATCACACTGTGGAAGATGCACTGGCAAATAATTGCACTGTGAATGATTCTTCTCTAGAAGACACATCTGGGCATGCATGTGCCACTCCTAATGATTCATATGTTGGCGATGCCCCTGCAGATGAGACGTCTTTGGAAAATCTACCACAAATACAAACATCTAGGGAAAATGGCACAGAGTCTTCTAatagtaacataataaatattaatgggCAGAGGCAAGGTTTTGAATGccaactctgtagcaaagtcttTAAGAACAAAGTTGCTTTGGTGAGACACAAGGGCTGGCATTCTAGATCTCCCTCGGCTCGTTTAAAGAGCAGTACAGTGGAATTAGTTCCAAAGAGTAGACCAGTGTTTGATACTTCAGCGACAATAGATTTATCTTCTCCTACAGTAACGCTACCAATGCCAACTCAATCTTATACCTGCTTGACGTGTGGTATGCCGTTCAGCAGTGCGTCATCTCTGAGCAAGCACAAGCGGCTGCACCTGTCGCCGACGCCTACGGCCCCGGTGAACAGGTGTCTGAGGCCGAAGGAGTCGGTTCGCCCACCTGACCGTATGCTACCCGAGCTGGAGGTGCAGGGTGCCTTCAGGTGCAGCACTTGCAAGAAGTACTACAGCTCTGCAAAGTCGCTGTACAAACACCAGAGGCTGCACGCACGCAAGCCTCTTCCCGCATTTGCCAAACTGTTGCCTGGTGCTCACGCCCAGCCGGCCACTCCCGTACGAGGGCTGTCCAAGCGGCTCATCCCAACCAAGTTCCACTGCAACATGTGCGGTCTGTATTACAGCAGTGCCGAGACGTTGTACAAGCATAAGCGTCTCCACGAGAGGCGTTTAAATGCTACGCTGGCAGAGGAGGCCGTCACCCCACTGGTGCAGATTCAGACAACACCGCCGGAGCGCACGGTCCGCAAAAAATATCGCTGCGAGATTTGTCTGAAGTTTTACAGCTGTAGTTCAAATTTGTACAGGCACAAGCGCCTGCATTTGTACCAGCAACAAATGCTGCCTGTTGCCGACCCTCCCGGGGAAGCTGCTACCGTGTTTCCTCCGCAGGACGCTGGCACGCCGTTTCCCAGCGAGCAGCCGCCCGTGCAGAGCGCGGCCCGACAGCAGGTGCAGACTCCGTATCAGTGCGACGTGTGCAAGAAGTTCTACAGTTGCTCCACTTCCCTGAACAAACACAGGCGTTTGCACGCTGCGAGGCCCTTGCCGTTGCCGGCGAAGNTTGCAGTTGCCGGCGAAGAATGTGGAGGGAGACCCTCCGGTAGACGAGGCAAGCACTAA
Protein Sequence: LVSSQDGLPTAICKVCLQQVNQWHDFKQVCDSSQATLKRWLCETQATSVASPTTADTTTADATTVPNTSSNTITTADSTVISIDTNQVVIKQEPVDVDEDSVFQEDVQDVCGDSREYCMLDVKQEEIEVSEDNPVEAHDGLVTADPLDVPAGRNRKSPLQEDHHFYNSAVLLDDNGSAFECENEGEIDFMRVNHGGAISVQGLFDSSESAAVASKPTQPKKRRRFFKRITFKKKKKKSPPIWTPQEVRMEPHHGYMCRKCGESFPELWLLKSHEKSHGSAENVCTVCEKRFSSKGCLVRHIRLHTHQMPYSCAKCSASFANKFAYLQHRQTSCPIEEPPPAPPEAAQTSTDNQESKLSCYICQEMFPSVNQLIQHRKGHVNYSCPKCKKHFAGGKALSNHLRVHKLGAMMAHKMVHAKAPPAVMPVPAIQKTSSCSVCNKVFSSVGLMHRHMTKHTKLKQFTCNICHTSMGYATSLRKHMKGMHNIDIDHSSIKPDNIPLSYVPSTQDLSPLVIKSEALEAPAETVDEHVCNICNKVFGQKSLLVNHLKVIHMGVKAYKCTTCSKMFTSKPHLVRHMQTHKEGQFALTCKICCKKFPDVKTYNKHKGVHTRYRCYTCGICSESFNGINSWRAHQVTHLPDFGHAPMMNIAKQEVQTSAGKYTCRLCFKMYRSRAELYEHKKMHIKLKIYSCTECKNSYNSLSALMKHKRREHSSDEHYFDMGLMSESTHDCDFCGKSFGSSSSLSKHKLVHAELLYTNVTRVDPPARRRVLKTSETVDSALPVLPNDPFLCVPCNRSFTDLMSLKTHRGWHKRKHASPFSMLQLKAFGTQSPPKAPVSPPKASVSPPKASISTPTKEAFNPPRSAKAFPEDNFWCVECNKGFKKSVNLSRHFKLSHRHNVKAQGQAGSMDDSPTKDGFDVLPVEVQLVEHEPTDNDASEVLANDSAADSASADSVLDDAPAVASNSASDGASADDSVISEEPAKDSSTALILENGVPTDNCAIDDASANNHTVEDALANNCTVNDSSLEDTSGHACATPNDSYVGDAPADETSLENLPQIQTSRENGTESSNSNIININGQRQGFECQLCSKVFKNKVALVRHKGWHSRSPSARLKSSTVELVPKSRPVFDTSATIDLSSPTVTLPMPTQSYTCLTCGMPFSSASSLSKHKRLHLSPTPTAPVNRCLRPKESVRPPDRMLPELEVQGAFRCSTCKKYYSSAKSLYKHQRLHARKPLPAFAKLLPGAHAQPATPVRGLSKRLIPTKFHCNMCGLYYSSAETLYKHKRLHERRLNATLAEEAVTPLVQIQTTPPERTVRKKYRCEICLKFYSCSSNLYRHKRLHLYQQQMLPVADPPGEAATVFPPQDAGTPFPSEQPPVQSAARQQVQTPYQCDVCKKFYSCSTSLNKHRRLHAARPLPLPAKXAVAGEECGGRPSGRRGKH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -