Choo001731.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Clitarchus hookeri
Gene Symbol
su(Hw)
Assembly
None
Location
NQII01000423.1:459934-624465[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 5e-05 0.0049 16.5 0.3 2 21 38 57 37 58 0.94
2 13 9.1e-06 0.00089 18.8 1.0 1 23 143 166 143 166 0.97
3 13 4.3e-06 0.00042 19.9 0.2 1 23 172 194 172 194 0.98
4 13 1.1e-05 0.0011 18.5 2.0 1 20 200 219 200 220 0.96
5 13 7.4e-08 7.2e-06 25.4 1.1 1 23 232 254 232 254 0.97
6 13 8.2e-05 0.008 15.8 6.1 1 23 264 286 264 286 0.99
7 13 3.6e-07 3.5e-05 23.3 2.5 1 23 292 314 292 314 0.99
8 13 2.6e-05 0.0025 17.4 0.6 1 23 320 342 320 342 0.99
9 13 6.3e-07 6.2e-05 22.5 3.7 1 23 348 370 348 370 0.95
10 13 0.00013 0.013 15.1 2.2 1 23 376 399 376 399 0.96
11 13 6.4e-06 0.00062 19.3 0.4 1 23 405 427 405 427 0.95
12 13 2.4e-06 0.00023 20.7 0.8 1 23 433 457 433 457 0.98
13 13 3.3e-07 3.2e-05 23.4 2.0 2 23 464 486 464 486 0.97

Sequence Information

Coding Sequence
ATGGATGATGAAATTGAGGAATTGGACCCCCTACAAATTGagccaCCTGTTTCGAGAAGGTCAATGAGAACATCCCAAATAgcagacaaaaacaaaaatggcagTAACAGCAGATGTGAGCAGTGCAATAGGACATTTGCTAACCCAGCTGGCTTGAAGAGGCATTCAAGGTATTGTCAGAAGAATCGCATATCTGTGGTCGGTGATGTGGAGCAGGTTAAGCTGGAACTGCCGGTGGTTGCAGTTGCTGCAAGTGCAGAGGTGCCTGTGGAAGAGCCCACGGAATCAGATATGACACTTCGTGACCAAATGAAAGGAGTGATGCTGAACAAAGTTAACGAGCTCATAGATGAGACTACTGCCTCTGGTCCAGTTAAGTGTCACTGCTGTGGGGAGGACCTGGAGACAGCACATGTTGGGGGAGAGTTTGAGTGCATGGACTGCGCAAAGTTCTTCAAACTGAAGTCCAGCTTGGAAAGGCATCGGCGAGTCATACACTTCGAAGGGGATACGTACGAGTGCCCAGAATGTGGGGCTCGTTGCCCTGACAAGGGCACTTTAGCTCGTCACATTTACACCCACACAGGTTTGAAGCCATACTCGTGCAATCGCTGCAACAGGCAGTTTAGTCGGAAGTACCATCTGGAACGTCACGTTGTTCAGACAGGCTGTGATGGCAACCCAAAACCTTCACATCCGTGTCAGGTATGTGGGCGGATGTTCAGCCGGAAGGACAACTTGCGAGAACATCTTCGTGCCCACGCAGGTCAAGTTAAGAGGAAGAAGAAGTATACATGTGTGCATTGTAACAAGGTGTTTCATGGCTCCACCCTCTTGCACATTCACATGCGTACACACACAGGGGAGCGGCCGTACCAATGTGACTATTGTCCTAAATGCTTCCCGTCAAGTGGCGCCATGAAGAAACATAGGCGCATGCACACTGGAGAACGACCATATGAGTGCAAAGAGTGTTTCGCCAAGTTTGCTGCAAAGGAGACGCTGAATCGTCATGTGAGGACCCACACTGGGCTAAAGCCCCATTCGTGCAAGTACTGTGGGAAGAGCTTCATTCAGGCATCTCAGCTGCGAGCTCATATTTTCCACCACACTGgtgAGAATGGCTTTACTTGCTCACACTGTCAAAAAGCATTTAATAGGCGGGCACGCCTTGTCTTGCATGTGAAATATGTTCACGAAGGAGCCAAACCCTTCGAGTGTGGCAAATGCAAACGGACATTTGTGCGCAAGGAAGATTTAGCTCGCCATGAAATACTGCATTCTGGtgtcaaagCTCACAAGTGCCCCATTTCCATTTGTGAAAAGTCATTTGCTATGAAATCGTCCTTGAAAATTCATCTCTTGACTCACACAAAGGAACCTCCGCGCTCTTGTGAAGAGTGTGGACGGGCATTCATCCGACAGGACTGCTTACTGCGGCACATGCGCACCAAGCACAGAGACATGCTGGAAGAGATCCTGGCTGAGGCAGAGAAGAAGAAGCTTCAGCAGACACAGCTGATTGCTGCAGCTGGGGCAGGCTCTGCCCATACAGCCTCTTCTCTTGGCAGCGGTGCATCCAAGGGCGAAAGTAGTGGGCCCTTGTCCTCTGGCGAAGCTGGCATTCTGAGCGAGGATGCCTTGGCAGACTCTGTCCGAGAACTGCTCACCCTCCTAGTTGATGAGGCTACTTTGAAAGGATTTGGGTGGCCAAGTGCTCCAGTGGACCGGCTCCTGGAAGCTGTTATAAAGCGATGTGGCCACCAGCCCATGGGACCTGAAGATCTTGGCTACACAGACCGGCTGCGTGAGAATGCTAAGTTGCTCTTCACTGTAGTCATCGATGACTCTGCAGTGAAGACACTCTTAAACAACCAGACCGTGGATGAGGAGTGGCGAGGTGGAAAGAGAGACGAGCAGGGAGAAGGGGGAGTGTCACGTATTGCGAGAGGGAGGAGGGCGATCCTCGTATACAGAAGAgtcggaagagagagagagagaggagggatgGTGGCGAAGGTGGTGTGGAGGAAAGCCAAGATGGCCTCCTATTTCTCGGTAGCCGTCTCGGCTGTGTGGGTGGGTTTGGAAGGGGAGGAATGCAGGCGAGATGCCTGCCATCGGGCACTGAAGCAGTTCCACAGGGAGAGTGCGTGTTGGATACTGGTTGATGGTGGCAAGGGGTGGAGGGAAATGTGGGAGTCAGCGGCTGAAGTAATGGCATCAGCGAGTATGGTGTTGAAGGAGGTGGTAAGGTCAAGGGAGGCATCGAAGGATGATTGTAATCAGAGCCAGCCGAGGACAGGAATGTGGTCGAAGGAGCCAGCAGTGATGGTGCGGACATCGGTAATGATGGGTTGA
Protein Sequence
MDDEIEELDPLQIEPPVSRRSMRTSQIADKNKNGSNSRCEQCNRTFANPAGLKRHSRYCQKNRISVVGDVEQVKLELPVVAVAASAEVPVEEPTESDMTLRDQMKGVMLNKVNELIDETTASGPVKCHCCGEDLETAHVGGEFECMDCAKFFKLKSSLERHRRVIHFEGDTYECPECGARCPDKGTLARHIYTHTGLKPYSCNRCNRQFSRKYHLERHVVQTGCDGNPKPSHPCQVCGRMFSRKDNLREHLRAHAGQVKRKKKYTCVHCNKVFHGSTLLHIHMRTHTGERPYQCDYCPKCFPSSGAMKKHRRMHTGERPYECKECFAKFAAKETLNRHVRTHTGLKPHSCKYCGKSFIQASQLRAHIFHHTGENGFTCSHCQKAFNRRARLVLHVKYVHEGAKPFECGKCKRTFVRKEDLARHEILHSGVKAHKCPISICEKSFAMKSSLKIHLLTHTKEPPRSCEECGRAFIRQDCLLRHMRTKHRDMLEEILAEAEKKKLQQTQLIAAAGAGSAHTASSLGSGASKGESSGPLSSGEAGILSEDALADSVRELLTLLVDEATLKGFGWPSAPVDRLLEAVIKRCGHQPMGPEDLGYTDRLRENAKLLFTVVIDDSAVKTLLNNQTVDEEWRGGKRDEQGEGGVSRIARGRRAILVYRRVGRERERGGMVAKVVWRKAKMASYFSVAVSAVWVGLEGEECRRDACHRALKQFHRESACWILVDGGKGWREMWESAAEVMASASMVLKEVVRSREASKDDCNQSQPRTGMWSKEPAVMVRTSVMMG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
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