Choo004275.1
Basic Information
- Insect
- Clitarchus hookeri
- Gene Symbol
- -
- Assembly
- None
- Location
- NQII01001481.1:322421-352841[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.4e-12 1.8e-09 36.3 0.0 1 41 240 281 240 284 0.91 2 2 1.3e-07 0.00017 20.5 0.1 1 26 294 319 294 320 0.95
Sequence Information
- Coding Sequence
- CTGAGTGTTTCCAAAATGAGTAAGACTTCTAAGTATAAAGTTAATTGTGCTATGGCACAGTGTACTAATTGGGGGTCGAAAACGACTGGCGTTTTATATCATAGATTTCCAAAAAACGAGGATCTCCAGCGCGTGTGGGTATTGCGCTGTAAGCGAAGAGACATTTTTAATCCCGATAATGCTAGAGTCTGCTCTGTACATTTCCGCCAAGAAGATTACCAACGAGACTTGAGAAATGAACTTTTGggattaccacaaagaaaaatattgtgcccaGATGCTGTTCCATGTCTTCGAATTGCAAATTGGCATGGGGATACAGTTTCAGTTTCTAGCACCATAACCAGCTCAAGCACTGTTACCAGCCAAACTGAGGAagagGGGTTGGCCGAAGATGTGCACATAAAGGAAGACCCAGGCAAGTATGAACCTTTTGAAATGGTTTTCGTGGCCGTCAAACAGGAGCTCAAGGATGAATCTTGGAACGATGACACCCGTGTAGATGTGGTGGCTTCCTGCACCGAAACCACACACATTGCAGAGACTGCTGTTGAGGGAAACATGCTCGTGAAGGAGGAGATAACCTCTGAAGACAGCGAGGTGTGCCAGGAGTCGACAGACATTCCCACAGATGCACGCTCACCTTCTCCATCGTCAGACAGCAGCACTGATGCAGACAAGAGCAATGTTGGCCTGGGTACCAAGACACACGTGTGGACCCAGGAAGATATGTGTCGAGCACTGGACGCTCTGCGGCACCACGAACTGAGCTTGTCCAGGGCGTCCGCCAAGTACGGCATCCCATCAACCACCTTGTGGCAGCGCGCCCACCGCGAGGGCATCGACACTCCCAAGAAGGAAGGCTACTTCAAGTCGTGGACGGACGAGAACATGAAAAATGCGCTGGAGATGATGCGAACAGGGGCGATGTCCGCCAACAAGGCCAGCAAGGTTTACAGTGAGTGGATATCTTCTGCAGTTTACACGCTGATGTGCTGCCGCGAGGCACAGCAGAGGTACCTTCCTGCGGCACTGGTTGCAGGATGA
- Protein Sequence
- LSVSKMSKTSKYKVNCAMAQCTNWGSKTTGVLYHRFPKNEDLQRVWVLRCKRRDIFNPDNARVCSVHFRQEDYQRDLRNELLGLPQRKILCPDAVPCLRIANWHGDTVSVSSTITSSSTVTSQTEEEGLAEDVHIKEDPGKYEPFEMVFVAVKQELKDESWNDDTRVDVVASCTETTHIAETAVEGNMLVKEEITSEDSEVCQESTDIPTDARSPSPSSDSSTDADKSNVGLGTKTHVWTQEDMCRALDALRHHELSLSRASAKYGIPSTTLWQRAHREGIDTPKKEGYFKSWTDENMKNALEMMRTGAMSANKASKVYSEWISSAVYTLMCCREAQQRYLPAALVAG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00343691;
- 90% Identity
- iTF_00343691;
- 80% Identity
- iTF_00343691;