Choo008053.1
Basic Information
- Insect
- Clitarchus hookeri
- Gene Symbol
- bab2
- Assembly
- None
- Location
- NQII01000488.1:506393-587501[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 7.6e-05 0.098 11.6 0.1 2 39 200 237 200 242 0.76 2 4 3.4e-09 4.4e-06 25.5 0.0 4 36 252 284 250 290 0.88 3 4 0.067 86 2.2 0.0 25 39 327 341 321 347 0.75 4 4 2.6e-08 3.3e-05 22.7 0.1 4 40 367 407 365 411 0.91
Sequence Information
- Coding Sequence
- ATGgcgAGCACTCTTTATAACACGCCGAACGTAGAAATGTTCACGCAAGTGAATCCAAAGTTGCAAGGGGAGTATTGTCTGAAGTGGAGCAACTACCCTGCCGATGTTGCCAACATCTTCCTGGAGGTTCTGCATTCCCAGTTCATGGTAGACGTCACTGTGTGCGCAGAGGGACACAAACTGCATGCCCACCGCATTGTCCTCTCTGCCTGCAGCCCATACTTGCAGgttaGGAAccactttgaagaaaaaaatgataGTGCAGAGGAGATGATGCTGGTCCCTGAAGAAAATATTCCGGAGCAAGCAGAAATAAAATCTGAAACTGAGAGAGTTGATGATAGAGAATCAGAATCATTAGAATTTCTTGAACAGAACAACTCTGATGACATGCAGAACTTGCTGGCAGCTGGCAAGTGCCCGCCGACGGTCAGCAACGAGACAACCAGAGCCCCGACGTACAGTGAAAGTTTGTTCTCCGTGAAAAAGGTTCCAAACAGCAATGAAGGACAGTTAACTTCTATGAAAACGAAGCACAAAACAGTCCATAATGTTTCAATTATCTCACAATCACATTTCTATTCTCTCATCGCATGTGAAGAGTCTCTGTCGGCAGCATTGGAAGAGTTGAAAGCAGGCCGGTCTCTTGTCGGCACAGCCAATGCATACCACATACCTCGCTCCACCCTGTATGTGCGAGCGCGGTCGCAGGGCATCCAACTGTCCATGTGCCGTCAGGGCCATGCTGGAGAGAGAGTGCAGGCGGCGGTCAAGGCGGTCACAGATGGAGCAAGTCTGCAGAAGGCGGCCGAGCAGTTTAAGATCCCCAAGACGGTGCTGTGGAGGAACGTGCACAAGCAGTTGGGAACGTGCTCGCAGGTCGGCAGGACCAAGTTCAGGAAGACTTACGACGAGGAGAAGAGACGTGCTGCTGTCAAGGCTCTGGAGCAAGGAGATAACCTCACTCAAGTGTCCCACCAGTTCCAGATCCCCAAAACAACGTTGTTTCGTGAGAAAACGCGTCTAGTGGAAACTGGTAGACTTCCGTGGTCGTGTCTGAAGCGGCGTGGTCCATACCTGGATGGCTTCAAGAAGAGCAGACTGAGTGAAGCTGTTGCAGCATGCAAGGATGGGAAGATGTCACAAGCATTGGCTTCTGTCACTTATCAGGCAAGTCTCGCTGTCCCAAAGACCACTATTTGGCGTCACCTGCAGGAGGGCTGCAAGTCTCGGGCCTACATCAGCGAGCACAAGCAGCAGAAGAAGAGCATCGACACAGCACTGTGCGGGGGAACGCTGAAGGTACAGGTTGTGAAGGATGAGGACCAGTCTGAGTCTCGGCTTCAGCAGCAGTTCACCTTTTCCCAGACGGAGCGACTTGTGTCGCGACATGGTGTGGCCACAGGTATTTGTTTAGTAACAAAACGGACATTGAAGAAGTAG
- Protein Sequence
- MASTLYNTPNVEMFTQVNPKLQGEYCLKWSNYPADVANIFLEVLHSQFMVDVTVCAEGHKLHAHRIVLSACSPYLQVRNHFEEKNDSAEEMMLVPEENIPEQAEIKSETERVDDRESESLEFLEQNNSDDMQNLLAAGKCPPTVSNETTRAPTYSESLFSVKKVPNSNEGQLTSMKTKHKTVHNVSIISQSHFYSLIACEESLSAALEELKAGRSLVGTANAYHIPRSTLYVRARSQGIQLSMCRQGHAGERVQAAVKAVTDGASLQKAAEQFKIPKTVLWRNVHKQLGTCSQVGRTKFRKTYDEEKRRAAVKALEQGDNLTQVSHQFQIPKTTLFREKTRLVETGRLPWSCLKRRGPYLDGFKKSRLSEAVAACKDGKMSQALASVTYQASLAVPKTTIWRHLQEGCKSRAYISEHKQQKKSIDTALCGGTLKVQVVKDEDQSESRLQQQFTFSQTERLVSRHGVATGICLVTKRTLKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00343750;
- 90% Identity
- iTF_00343750;
- 80% Identity
- iTF_00343750;