Choo004276.1
Basic Information
- Insect
- Clitarchus hookeri
- Gene Symbol
- -
- Assembly
- None
- Location
- NQII01001481.1:314357-314905[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.0051 6.6 5.8 0.0 27 39 4 16 4 20 0.88 2 3 4.5e-19 5.7e-16 57.2 0.0 1 44 33 77 33 78 0.97 3 3 1.5e-11 2e-08 33.1 0.0 1 39 86 124 86 126 0.92
Sequence Information
- Coding Sequence
- TTGGTTGCAGGCATCCCGAGCAGCACACTGTACAAGATAGCACGTCGAGAGGGGATACGCCTGTCGGCACCCTTCAACGCAGCCCCTACGGCGTGGACCCCGGATGACCTTGAGCGTGCGCTGGAGGCCATCCGCAAGGGCGAGATCTCTGTACAGCGAGCTTCCGCGGAGTTCGGCATCCCTACAGGCACGCTGTACGGGCGCTGTAAACGGGGAGGCATCGAATTGTCGACGCGTGGCAATATCACAGCATGGACAGAGGAATGCATGGGAAATGCGATGGAGGCGGTACGCGTCGATGGGATGAGCATCAACATGGCATCCCAGCAGTACAGCGTACCGTACTCGTCACTGTACGGGCGGCTGAGGAGGTGCAAGTGCGAGTCAGATGGACAGCAGCAAGAGGAAGAGACAAGCCGGTCCCCACCCTCAGCAGCCCCTCAGGACACAGTTGTTCCAGACCTCCAGGAGAATGTGCTGCAAGATGCCAGTCCCCAGCTAGATGCCTTGCCCCCTAGTACACAAGTGCTCTGTGCATCTCCGACGTAG
- Protein Sequence
- LVAGIPSSTLYKIARREGIRLSAPFNAAPTAWTPDDLERALEAIRKGEISVQRASAEFGIPTGTLYGRCKRGGIELSTRGNITAWTEECMGNAMEAVRVDGMSINMASQQYSVPYSSLYGRLRRCKCESDGQQQEEETSRSPPSAAPQDTVVPDLQENVLQDASPQLDALPPSTQVLCASPT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -