Choo009796.1
Basic Information
- Insect
- Clitarchus hookeri
- Gene Symbol
- Mblk-1
- Assembly
- None
- Location
- NQII01000381.1:550024-598847[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.8e-18 3.5e-15 54.6 0.1 1 45 293 338 293 338 0.96 2 2 8.5e-19 1.1e-15 56.3 0.0 1 43 740 783 740 785 0.95
Sequence Information
- Coding Sequence
- TTGCGTCATGAGGCCGTGACGTCACCTAGAGTAATGGCGGAGTGCTCGTACGCTCGCTGCGTTCAGGAAAGGCGAGCGATCAAAAAACAGCTGCAAAGATGGACCAAGAGTATGGTGTACGTCGTAGGTCTGGAGCGCATTGCTGAAGAGTTAATGGGCAGAAGAAAATGGAAACAGTACCAAGAAATAGTCGTGAACCACCCGAGGAGCGTGGATGGGCACAACTCTCTGCCGGACTGGGAGCCTCCCAACAAGTGCAACCTCTGCGATGGCATCCCCGCGCCTGATGCAGCCGTGATAGCGCTGTCAGACACGGAGAGCAGCGACAGCATCAGCAGTAGCAACAGCCAGAGTAGTTTCAGCGAGACTCCGCCAATCACTCTGCCCGAAGCTCACCACGGATCCCCCACACAAAACTCAACCTCTTTGGACACAATGACAACCCTAGAATCAGTAACGTCAATGGCTGCCTCTATCGCTGCGGTTGCAGCTTTGAGTTCAAGCACAAACCACCCTTCAAGCGAAGCGAACCCTGTCGGAGCGTCTGCGGCATTGCCGTTCTACCCACCTCACCATGGCAGCCCCATGTTCACCCCGTGGTACCTCCCGCCATCGTCGCCACACCCCGCAGGTCCGGCATCCACGCTGGCAGAAGGCTTGCGAATGGATGGAGCTTCGCTCTCGAAACAGTGCGTGGCCACTCCTGTCTCTATGAGAATTCCTAGAACTCCTGGACCGGACCAGCCTCTAGACTTGAGTGCTAAGGCAGCAGCAGATAACCATAGTCAACAGTCACTCAGGGTGCCGAGCATAGACAACAAGCACATCTTCAAagcCAAACCACGCTTAAGCGCCCTGTCTGGCCGCAGGACGTACACTGAGGAGGAACTACAGGCAGCGCTGCGTGACATCCAGAGCGGTAAGTTGGGTACAAGACGTGCAGCAGTCATCTACGGTATCCCTCGCTCCACGCTCCGTAACAAGGTGTACAAGCTGGCGATGGAACGCGAGCGTGAGATCCACCTAGTGCCTGCTGATGTGTTCAAGGCTGACGATGAAGAGAAGGAACTGTCTGGTGCAGAGGAAGAACAGGAAGTGGAAAAGGTTTTGAGGAAACCTCTCCTGTCGATGGAAGATCTTGTGCGTTTTTCAATGTTCGAAAATAATAGCCTTCCTCCACCGGATGCGTTGAGGGCACTCCTACATTATCAAGAAGATGGTGATGGAAGCATCTCACCTCcttctttgttttcttctttcactCATGATGGTTGGGGTGGCATGGAGCACAGCACACTCGGTCCTTACATATCTCAGCTTCTCGCAGCATCCCCCTTGGGCAACAGGCTTGTGCGTAGAGATGGAAGTCCTGTCGACATTCCGAAGTTTCCTAACCCGCTGTTGCCGGAAATCGTACGACGCATGATGGCTGAAGAGAAGCTACTGATTAACGAGCAGCTGAAAAAGCAGACGGGTAGTGGCGTGACTCCTAATCCAAATGGTGCCCAGTATCAAAATGATGATAGAAGAAAGATGAAAACTGAAACGGCCATGCGACCTGAAGGAATTTTTCAAGAAGAAGAAAAGACGATGGACGTGGACACGAGCACCACTGCTTCCGGAACGGCCACCCCACCTAATGTGATACTGAAAATTCCGTCCTTCAAACCGACTTCAAAAAATGGAGTGCCATCCAGCAGTAGTGGTAGTGCAGAACCTTTGTTCTCAGAACAGTTTCCTTCAAATGGTAACTGCAGTCCAGGGATTACACAAGAGTCTAGTCAGCACATGAGCAGTAGTAACTCATGTTCACCACCTATTACTAACTTAATAGGTAAGGGAATTGGGGTAAGTTTGAGGGATGTTATTGCCAAAAGCATCAGTCAGAAATTTCAACAAggaactgaaaatatttcaccattgtCGCATCCACAACAGAAATTCTTGGAACCAAATGGATTTGATCAATCATCTTTCAGTCGCAATGACTTCACATCCCCGCTCACATCAACTTGTTCACCTGTTGCTGGGTCTGTGATAAAAAATCATTATaacaactacaacaacaacaacaacaacagtaGTATACATGAAGACCGCAACACTCACAGGTTATCTTCTTTTCATAAACAACCAGTAAGTAGTGGAGCAACAACAGGCATGACGACAACAGGTGGGAAAGGTACCAGGCCAAAGCGTGGCAAGTACAGAAACTATGATCGTGACAGCTTAGTTGAAGCAGTGAGAGCAGTTCAGAGGGGAGAAATGAGTGTGCATCGTGCTGGTTCTTATTACGGAGTCCCACATTCTACCCTGGAATACAAAGTTAAGGAGCGTCATCTGATGAGGCCACGTAAACGAGAACCAAAAGTGCAGTTGGATGAAGCAAAGAGAAAAGATGATGTTTTAAGAATTTCTTCGCCAGAGAAAAGCAAATTGCAATCCAAACCTATTAAACCTCCTTTCCCAGCAACATCTCCTTTGACAAACACCCCAAATGGTATGGTAAAAATGCCGCAACTATTTGATCCTAACTTACCACTGGGTTACCCGACCACTCCACCTTTCCCATTCTGGCCTTCAAACCCATTTCATTCACTACCGATACCTGAATTTTCACGGGGGGTAGGACCTCCTGCTAGCTTTGGTTCGACACCAGAACAATTTTTTGCTTCACAGATGATGCAGCGCTTACAAGAAGATTCTTCTCGAATACATCATAGTAGCAACAGTCCTGGTACCACCACCAGTCGCAACACTTCACCTCCAGTAGTCCCCGCCAGGACACTGGGAAAAAATGCTCGTGAAATAGCAGAGAATTTGTATGATGGCAGTGGGGCAAATGGAAGTTTTCTGGATGGCATAATTCGATCAAGTCTAGAGTTGGGTCTCCCTGTGAGCATCCCAAGAAAGAGTGGAGTGTGCAGTGAATCTGTGATGACTCCCGAGAACATGTCTAACAAGGCTCTTCTGGATCAGCTTTGTCGGAACAGTCACCTTCCTCCTCTCTCGCATCCCCCTTTCGATGGCAGCAGTTCCGACGACGATTCTGTAAAAAGGGTTCGTGGGAACAAGTGCCGAAAGACTGATTCTGGAGAAGGCACGTCTGCCATTGTGGATCTCGGTTCTCCGACTACCAACAACTCAGCGATGCATAGCATAATTCCTGTGGATGAAGACTCTAATAACTGTGTAAAAGCTCCTTCGCCTGAAGGAAACACCAAAAACTCTTTAATTGAAAGTGTTGAGAATCTAAAGCCACCGTCCACTGAGACAAGTGGCATAAATGATGATAACTGTGGGACAGCAGAAGATGAAAGTGCCTGTGATAGCAAGTCAAGTGTACTGAGGGTTGATAGTAATAATTCTGCCAAAGAAGAAGAACAAGGTGTGGAGACAGAAGAGAAAACCAAATCAAAGATGATCAACTCATGA
- Protein Sequence
- LRHEAVTSPRVMAECSYARCVQERRAIKKQLQRWTKSMVYVVGLERIAEELMGRRKWKQYQEIVVNHPRSVDGHNSLPDWEPPNKCNLCDGIPAPDAAVIALSDTESSDSISSSNSQSSFSETPPITLPEAHHGSPTQNSTSLDTMTTLESVTSMAASIAAVAALSSSTNHPSSEANPVGASAALPFYPPHHGSPMFTPWYLPPSSPHPAGPASTLAEGLRMDGASLSKQCVATPVSMRIPRTPGPDQPLDLSAKAAADNHSQQSLRVPSIDNKHIFKAKPRLSALSGRRTYTEEELQAALRDIQSGKLGTRRAAVIYGIPRSTLRNKVYKLAMEREREIHLVPADVFKADDEEKELSGAEEEQEVEKVLRKPLLSMEDLVRFSMFENNSLPPPDALRALLHYQEDGDGSISPPSLFSSFTHDGWGGMEHSTLGPYISQLLAASPLGNRLVRRDGSPVDIPKFPNPLLPEIVRRMMAEEKLLINEQLKKQTGSGVTPNPNGAQYQNDDRRKMKTETAMRPEGIFQEEEKTMDVDTSTTASGTATPPNVILKIPSFKPTSKNGVPSSSSGSAEPLFSEQFPSNGNCSPGITQESSQHMSSSNSCSPPITNLIGKGIGVSLRDVIAKSISQKFQQGTENISPLSHPQQKFLEPNGFDQSSFSRNDFTSPLTSTCSPVAGSVIKNHYNNYNNNNNNSSIHEDRNTHRLSSFHKQPVSSGATTGMTTTGGKGTRPKRGKYRNYDRDSLVEAVRAVQRGEMSVHRAGSYYGVPHSTLEYKVKERHLMRPRKREPKVQLDEAKRKDDVLRISSPEKSKLQSKPIKPPFPATSPLTNTPNGMVKMPQLFDPNLPLGYPTTPPFPFWPSNPFHSLPIPEFSRGVGPPASFGSTPEQFFASQMMQRLQEDSSRIHHSSNSPGTTTSRNTSPPVVPARTLGKNAREIAENLYDGSGANGSFLDGIIRSSLELGLPVSIPRKSGVCSESVMTPENMSNKALLDQLCRNSHLPPLSHPPFDGSSSDDDSVKRVRGNKCRKTDSGEGTSAIVDLGSPTTNNSAMHSIIPVDEDSNNCVKAPSPEGNTKNSLIESVENLKPPSTETSGINDDNCGTAEDESACDSKSSVLRVDSNNSAKEEEQGVETEEKTKSKMINS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -