Cinc006231.1
Basic Information
- Insect
- Clistopyga incitator
- Gene Symbol
- salm
- Assembly
- GCA_947507545.1
- Location
- OX382172.1:16319637-16330815[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 5e-06 0.00053 20.6 0.9 1 23 468 490 468 490 0.98 2 9 9.9e-06 0.001 19.7 2.1 1 23 496 518 496 518 0.98 3 9 0.062 6.6 7.7 3.8 2 23 912 933 911 933 0.98 4 9 4.3e-08 4.6e-06 27.1 0.6 1 23 939 961 939 961 0.97 5 9 6e-05 0.0064 17.2 2.6 1 23 971 993 971 993 0.98 6 9 0.0021 0.22 12.4 1.9 2 23 1324 1345 1323 1345 0.97 7 9 0.013 1.4 9.8 1.1 1 15 1351 1365 1351 1365 0.94 8 9 1e-06 0.00011 22.8 2.1 3 23 1585 1605 1583 1605 0.96 9 9 2e-07 2.1e-05 25.0 0.9 1 23 1611 1633 1611 1633 0.98
Sequence Information
- Coding Sequence
- ATGCAGCTTATGCGATGGAGCATCACTCGGAGACTCGAGAGCAGTCGCGGCATCAATAAGCAAAGACGCGACGGCGTTGACTGTCAAAACGGGGAGCATCAGAGCATACCGAACGGACTCACCTCCCCGAGATATTCCGAAGAAGAAAATGATTCGGCATCGGAGGGTGAGGAGAGTAACAGCGGGGTGTGCGTCGTGGGTGTGCAATCGGTCGGTGGTCTCGTCGGAGACGACGCGGCGGTCGATCTCACGTCGTCCCGTTCGCACCACGGTGACGAGGACGACAGAGACCCTGAGGAGTTGCCGATGGAGGAGGACGAGGAGGAGGGTATCGCGGACGAGGTCGAGGATCAGGAAGACGACGAGGAGGGTTCGCGAAAGCAGATGCGTCACCGTCAGGACGCGGAGAACAACAACAGTTTTATCGGGGAGGGTGGCCGAGGTCATAGTGGGGGCGCTGTCGGTGGTGCCACGGAGCCCGGCAGTATATTTCCGCCGGCAGGCACGAGTCACGTCACCCTCGAAGCCCTTCAGAACACGAAGGTGGCGGTTGCTCAGTTCGCAGCAACGGCGCTCGCCGGTGGCGCCGACAGCGAGGCGGCTCTTCAGGATCTCGCCCTCCTGCAGAGCACCCTCTACACATTGCAGCATCAGCAAGTGTTCCAGTTGCAGTTGATAAGTCAACTGCAGCAGCAGCTATCGATAACACACACGGGACAGCCTTCTATTGTCGGGCCGGTCCAACAAGCGGCGGCTGCGGCGGTGGCGGCGGCGGCGGCAGCGGCGACGAGTAGTGGCGTTACACCCGGTGAGTCGGTTCAGGGTATCGCCAGTATCGTTACTGCTGACGGCAGTAGTAACACGAGCAAAGAAGCATCCCCATCCCCGTTGATACACGCGAAATCCCTCGCGAGTTTGACCTCGCCGCCTTCCTCCCGACCGCCGAGTCATCATCAGCCGTCGTCCTCGCCTTTGACCCCATTGAGCAGCCTCGGTCAGCAGCAACAGCAACAGCAGGAAAGACCAACAGCGTCGAGTAGTACCTCGCCGTTAGGCACAATGCCGTTGCCCGCGACCTCGAGCATGTCCGCGCCACCGGCGATGAGCAGTAGCACCGCTACTAGTCAAGCGCCAATGCCCATGTCGCACCAAATGCAAATGTGCTCGATAAGTTCGTCACTCGCCTCGTCCATAATCACCAACACCGATCCGCCCCCGCTACACGAGCCGAATACCCTGGAGATGCTTCAGAAACGGGCTCAAGAGGTCCTGGACAACGCGAGCCAAGGCCTCCTGGCAAACAACCTCGCGGACGAGCTCGCCTTTCGCAGCGGCAAAGGTTCACGTCTATCCCCGTACGATTCCAAGACCGGTGGCGGTCGGGGAGAGCCATTCTTCAAGCATCGCTGCCGCTActgcggcaaggtctttggaagcgactccgcactccagatccacattagatcccatacaggtgagcgtccctttaaatgcaacgtctgcggcagccgattcaccaccaagggaaacctcaaggtccactttcagaggcacacCGCAAAGTTTCCACACGTTAAAATGAATCCGAATCCCGTGCCCGAACACCTCGACAAGTACCATCCTCCCCTGCTCCAGCAACTGGCCGCTTCCGGTCAGAGACCGATGCCCTCCCCGCCTCCCCCGCCGCCGCCCCCGCAACAGCAGCAACATCACGCATCCGGAAACTTTAATCCAGTTGCGGCTGCAGTCGCCCACGGTTTTCTTCCGCCCCAGCCGCCCTTGCCCTTGGCTCTCGCCTTACCTGGTATGCCACCCCTTTATCGACCTCCCATCGTTAACCATCGCGACGATCAGGAGATTCCGGAAAACCTCAGCAAACCCGTACCGGCAGCGCCAATATCACCGCATTCACCGCTCGCGTCGagcgttcactccaattcgcatcattcctttcacgagccgcaacaacaacaacaacaacaacaaccacagcagcatcagAAAACACACGAATCACAACAGGAGGACATAAAACTCGAACAAAGATCACCAATGCAGGAGTACCAACCGCAGAGACCGGCAAGTCAAGACGGCGAGGAGAGAATAACACCCAAGAGAGAACCCGAAGAGCCCGAGGAGGTCGTCGAAGAGGATAACGAAGAGTTCGATGAGACCGCCGGTCGGTACCTAAACGCCTCTCCCTCCCCGGCAAACCATCCCATAACCCATCCCCAATCCTACGAGGATTGCAGCATGGACAGTAAAATCAGCGGGCGTCTCGAGCACGACGGTGAGATGATCGAGGCCGACGAGGAAATGGAGGAACAACCGGAGAACCTATCGAGTCGGGGCGGCGGTGCCGGGAGCGCGAGCCGCTTGAATCAGCAACAAATAGCGAGCGCCGGCAGTGGTTATCCGGGCGCTTCGCCAGCGAGCAGCAGCGCGAGCAGCGGCAGCCTCCAGACGTCCTTCGCCGGAATTCTCTTTCCCGGCCCACCGAGCCACCATCAATTACCGCATCATCCATCCTCGACAACGGGCACGACGCCCACAACCGGCAACGAGATGATGGTCGATCCGGCCCGAGATCCAGCGATATATTCGAGCCTGTTGCCGCGGCCCGGCAGCAACGACAATTCCTGGGAGAGCCTTATCGAGATAACGAAAACCTCCGAGACCTCGAAGCTCCAGCAGCTCGTCGACAATATCGAGCACAAACTCACCGACCCCAATCAATGCGTTATATGTCATCGGGTGTTATCGTGCAAAAGCgcattgcaaatgcactacagaactcacacgggcgagcgtcccttcaagtgcaagatatgcggccgtgctttcaccaccaaaggcaacctcaagacccacatgggcgtgcatcgagcgaAGCCACCTCTTCGGGTGCTTCATCAGTGTCCGGTATGCCACAAGAAGTTCACCAATGCGCTTGTCCTTCAGCAACACATACGTCTGCACACGGGAGAGCCCACCGATCTCAGCCCCGAGCAGATACAAGCCGCTGAGGTCAACGAATTTCCCCCGAGCTATCCTCATCATCCCCTCACCTCTTTCCTGCCCCAAGGATTTCCCGGATTACATCCCGGAGGCGCGGGGTTTCCTTTGGGGTTTCCCCCTTCCCGTCACCATCCCTTAGACCGGCATACCCTCGAGAACGATATCGACTCGAaggaacatcagcagcaccaacagttacggcttcagcagcaacaacaacaccaggaacaacagAGGAGATACCTCGAGGACGTTCAGAGTGAGGACATGGAGGATCAGGACGACGAGGAGGAGGACAGAAGGGAAGACGACGAGAGGTGCGAGGACACCAATCGCGAAACCCGAAGTCCCGGACCCGATGACGAAGACCAAGACAACGACGACGACAGCAGAAAGGATGTTACGAATTCCATCGTGAACATTCCAAGCTTTACGACCTCGCTTGCCGCTTTGGAAAATCAAGTCAGAACCATCACGACGACCGCCAGTACCGGGCCAATGATAACGAACTCCGCCGCTTGTTCGCCACCGATTCATCGGTTCAATGGCAGCGATAAAAGCACGAGCCCCCCCACCAGCACCGGTGGCGCCCCCCTCGATCTCACGCCCCGGGCTTCGTCCACTCCGGCGTCTTCCGTCGTTTCCGCTTGCACGCCACCGCCACCGCAGGGCCTACCCCATCACACGCACCCTTTCGGAATGTTCGCCGGTCTATTGCAGGCCGTCTCGTCGTCAGCGCCCTCCGGGGTACCCGCTAACAGCATCCAGAACTCCGGCGGCACGATAAACAGCGGGAGCGGGGTTGGCGCGTCTATTAACGCCGTTAGTCCGGGCGGGAGCGGCGGCGGTGGAGCCCTTGCCTCGCTAACGACGTCCGCCGTGCTCGCAGCATCCTCGACCTACAATCCGCTCGGCCTGGCTGTCGGAGGGCCAGCAGtacgtggcaacaccacgtgtaatatctgctacaagacattcgcgtgtaactcggcactggagattcactatcggagccacacgaaggagcggccctttaaatgcagcatttgcgaccgaggattctcgacaaagAGTGACGGCACGTGGGTTAAAACGTGTAACTGCGGGGATCAGCGAAACCCCTTTACCGCAGGGATCCTGCAAAGTCCTCACGCCGCTTTCCACTCGCTCGGGATGACGACTTCCGGTGGCGGTGGCGCTGCTGGCTTGACGGCGGCAAGTCAGGACAGCAGGCCCAAACGCATCAGGCGGCGGCGGACTGAGGACCGGAAGACCCGGGGGCGGACGGGGACCGGAGGGGGGCGGGGACTGACGTCTGCCTATGCTGCCGTCCGCCTGCCCCCACTGATGCCCCCCGCCCTCGGACTTCTAGCCTCGGACCACGTCTTCCTGGGAAACATGAAGCAGCACATGCTGACCCACAAAATCCGTGACATGCCgccacacttgttcagcgactccaaacaacctggacaacaacctggacaacagcagcaacaacaacagcaacagcaacaacaaatacagcagcagcaacagtcccaagagcttgagagctcgagGAGTCCCATGTGCGTGGATGAATCGAGTCTACCACCCCCACCACCCCCTCCGCCACCTCCACCCCCGCCGATGCCGCCCTCCTCAATCGAATCGCCGATGCCAGTGAAGAGGTCGCCGTCCGAAAGTGATCTACCCGCACCAAAGAGGCCCAgcatgtccagcaaacacttgtgccaggtttgcaataagaatttctcctcgtcctcggcgctccagattcatatgagaactcacacgggcgacaagccttttcgatgcaccgtctgccagaaggccttcaccaccaagggcaatctcaagGTCCACATGGGAACCCATATGTGGACGAACGGAGCATCCCGACGAGGCCGACGCATGTCGTTGGACCTTCCACCGCTGCCCATCACGCCCAAGGATTCAGAGTTTCTTCAACGCCGGCCGGATCTGTTTTATCCTTATCTACCCGCGCCCTTCCTTAACGGGGTACAACAAAAACTGAACGAGATATCGGTAATTCAGGGCAACAACGGTTTGCCCGCACATCCGGTGAGCGCTGGAAAATACGCGGGTCTCTTCGGTTCGATTTACGGTGGGGGTGGTTTTCCGATAGAGAAGCAACCGATGGCACCGAGCAACGGTCCGTTGGGTGACGGAAAATCGTCGCTTCCCTCGGGTTCGATGCTCTTCCAGACACCGTCGCCGTCCCACTCGCCAGGAACCCCCTCGTCCAACACCGGCAACCAGAATTCAGCGAGCGTGCCCGCCTGGAGCGGCGAGGCGCTCCAGCATCATTTCGAGCGCGAGGCTCCGTCCAGACCGGAGAACAATCCGACGCCGCCGTCGGCTCGACTTCCGCCGCCCTCAGCGCCTCGTGGTGAAGGCCTCGCCGCGTGA
- Protein Sequence
- MQLMRWSITRRLESSRGINKQRRDGVDCQNGEHQSIPNGLTSPRYSEEENDSASEGEESNSGVCVVGVQSVGGLVGDDAAVDLTSSRSHHGDEDDRDPEELPMEEDEEEGIADEVEDQEDDEEGSRKQMRHRQDAENNNSFIGEGGRGHSGGAVGGATEPGSIFPPAGTSHVTLEALQNTKVAVAQFAATALAGGADSEAALQDLALLQSTLYTLQHQQVFQLQLISQLQQQLSITHTGQPSIVGPVQQAAAAAVAAAAAAATSSGVTPGESVQGIASIVTADGSSNTSKEASPSPLIHAKSLASLTSPPSSRPPSHHQPSSSPLTPLSSLGQQQQQQQERPTASSSTSPLGTMPLPATSSMSAPPAMSSSTATSQAPMPMSHQMQMCSISSSLASSIITNTDPPPLHEPNTLEMLQKRAQEVLDNASQGLLANNLADELAFRSGKGSRLSPYDSKTGGGRGEPFFKHRCRYCGKVFGSDSALQIHIRSHTGERPFKCNVCGSRFTTKGNLKVHFQRHTAKFPHVKMNPNPVPEHLDKYHPPLLQQLAASGQRPMPSPPPPPPPPQQQQHHASGNFNPVAAAVAHGFLPPQPPLPLALALPGMPPLYRPPIVNHRDDQEIPENLSKPVPAAPISPHSPLASSVHSNSHHSFHEPQQQQQQQQPQQHQKTHESQQEDIKLEQRSPMQEYQPQRPASQDGEERITPKREPEEPEEVVEEDNEEFDETAGRYLNASPSPANHPITHPQSYEDCSMDSKISGRLEHDGEMIEADEEMEEQPENLSSRGGGAGSASRLNQQQIASAGSGYPGASPASSSASSGSLQTSFAGILFPGPPSHHQLPHHPSSTTGTTPTTGNEMMVDPARDPAIYSSLLPRPGSNDNSWESLIEITKTSETSKLQQLVDNIEHKLTDPNQCVICHRVLSCKSALQMHYRTHTGERPFKCKICGRAFTTKGNLKTHMGVHRAKPPLRVLHQCPVCHKKFTNALVLQQHIRLHTGEPTDLSPEQIQAAEVNEFPPSYPHHPLTSFLPQGFPGLHPGGAGFPLGFPPSRHHPLDRHTLENDIDSKEHQQHQQLRLQQQQQHQEQQRRYLEDVQSEDMEDQDDEEEDRREDDERCEDTNRETRSPGPDDEDQDNDDDSRKDVTNSIVNIPSFTTSLAALENQVRTITTTASTGPMITNSAACSPPIHRFNGSDKSTSPPTSTGGAPLDLTPRASSTPASSVVSACTPPPPQGLPHHTHPFGMFAGLLQAVSSSAPSGVPANSIQNSGGTINSGSGVGASINAVSPGGSGGGGALASLTTSAVLAASSTYNPLGLAVGGPAVRGNTTCNICYKTFACNSALEIHYRSHTKERPFKCSICDRGFSTKSDGTWVKTCNCGDQRNPFTAGILQSPHAAFHSLGMTTSGGGGAAGLTAASQDSRPKRIRRRRTEDRKTRGRTGTGGGRGLTSAYAAVRLPPLMPPALGLLASDHVFLGNMKQHMLTHKIRDMPPHLFSDSKQPGQQPGQQQQQQQQQQQQIQQQQQSQELESSRSPMCVDESSLPPPPPPPPPPPPPMPPSSIESPMPVKRSPSESDLPAPKRPSMSSKHLCQVCNKNFSSSSALQIHMRTHTGDKPFRCTVCQKAFTTKGNLKVHMGTHMWTNGASRRGRRMSLDLPPLPITPKDSEFLQRRPDLFYPYLPAPFLNGVQQKLNEISVIQGNNGLPAHPVSAGKYAGLFGSIYGGGGFPIEKQPMAPSNGPLGDGKSSLPSGSMLFQTPSPSHSPGTPSSNTGNQNSASVPAWSGEALQHHFEREAPSRPENNPTPPSARLPPPSAPRGEGLAA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01207587;
- 90% Identity
- -
- 80% Identity
- -