Cinc016359.1
Basic Information
- Insect
- Clistopyga incitator
- Gene Symbol
- -
- Assembly
- GCA_947507545.1
- Location
- OX382188.1:2292924-2297926[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 4.4 4.7e+02 1.9 3.6 2 23 232 254 231 254 0.95 2 21 0.85 90 4.2 2.9 1 23 321 343 321 343 0.97 3 21 0.0095 1 10.3 0.4 1 23 392 414 392 414 0.98 4 21 1.7 1.8e+02 3.3 0.5 1 20 475 494 475 496 0.90 5 21 0.82 87 4.2 0.3 1 10 508 517 508 531 0.73 6 21 0.12 13 6.8 5.4 1 23 536 558 536 558 0.98 7 21 0.039 4.1 8.4 0.1 1 23 604 627 604 627 0.95 8 21 0.00014 0.015 16.1 0.0 1 23 633 655 633 655 0.96 9 21 1.4e-07 1.5e-05 25.5 1.0 2 23 693 715 692 715 0.97 10 21 0.0017 0.18 12.7 0.5 1 23 721 744 721 744 0.95 11 21 0.014 1.5 9.8 0.0 2 23 752 774 751 774 0.93 12 21 0.00012 0.013 16.3 0.8 3 23 784 804 782 804 0.92 13 21 0.037 3.9 8.4 0.1 2 20 880 898 879 898 0.95 14 21 0.042 4.4 8.3 0.0 2 23 918 939 917 939 0.96 15 21 1.9e-06 0.00021 21.9 0.9 2 23 956 977 955 977 0.97 16 21 0.00023 0.024 15.4 2.0 1 23 1000 1023 1000 1023 0.91 17 21 0.62 65 4.6 0.1 2 23 1079 1101 1078 1101 0.95 18 21 0.0052 0.56 11.1 0.6 2 23 1129 1151 1128 1151 0.92 19 21 0.13 14 6.7 0.3 1 23 1159 1183 1159 1183 0.98 20 21 1.8 1.9e+02 3.2 0.3 1 23 1188 1211 1188 1211 0.91 21 21 0.018 1.9 9.5 0.1 2 23 1242 1264 1242 1264 0.96
Sequence Information
- Coding Sequence
- ATGGAGGATGTTCCGGGGCTTGAAAATCCCGAGATCGTGTGTAGATTGTGCCTTTCAACGGAGGAGCCAATATCGTCGATATTCGACGATCAAGCATCCGCTGTTTCGTTGGTTACGAAAATTCAAGCTTCCCTGTCAATCGAGATACAAATCAGCGACAAATTATCCACTCTGATATGCGCCAATTGTTTAAAGAGGGTCAACGAGTGGCACATTTACAAGGAAGCGTGTCTGAGATCCCAGGAAAAGCTGCAAAGATGCCTGAGGGAAAGGATGGAAACCCTTCCAAACATAAAATTGGAGCCGATGGACGTGGACGAGCCGATGGAAACGTTGGAGACAGTTCCGTTGACATCGGACGAAGAATGGGAGGATTTACCGGATCTCCCGGTGAACGCGTGCCTGACGAGTATGTGCGTGGAAGCGCCGCGAAACGGCGAGTTGAGAGAGGCTCCGGCGATAAAGAGGGAGCTTACGGAGGACGAAGAGAACACGACGAACGCTGAAATCGAGTCTGTCTGCAGTCGGGAGCTTCTGTTGAACCCAATGGCAGTGTCGAGCAGCAAAGACGAGCGCGTGATGGAAGCGGATTCCACGCAAAAATTGGTAAAGCCGAAAAACGCGCGGGGGGCGAAGAAGAAGCAGCGCCGCGGTCCGAGGACTCACTACACGGGCACGCGAAGATACAAACAGCGCTGCTCCTTCTGCCAGATTTACCTGCACTCGAAATTTTCATACGCAAAGCACATGGAGCGTTTTCACAGCGGCGTGATAGTCGAAAGGCGGCCAAGAACGAAGCGCGAAACGTTGGAGAAAAAGCTCGAAATTCAGGCGAACGGCGATGAAGTTGAGGATGTTGCTGATGAGATGATAGAGGACGTCGAGGACGAGTTGATAAGCCTGGAAAAGGACGCTCCCCTAACGCCCGTGCAGCAGAACATAATCAGCCAATTAAAGACCTTCTCCTGTTACTCTTGTCGCCAGAATTTTCAGGATCGTCGCAGTACCCTTAATCACATACGCCAGCACATGCCCGACCTAAGGCCCTACACTTGCATCGCCTGTCTCACCGAATTCGCGGATCGTTCGATATACAAATTGCACTGCGGCGCTTCGTTCCAGTGCGCGATGAAAATCGCCCTCGTCGTGCCGGAAAACGGCACGGAAAAGTATTTCACGTGCAACATGTGCCTGAGGCCATTGGCCAACAGAAAGGAACTTCTCAGCCATTTGTCGAGGCACTCCGACCGGCAATACGAGCAAATGATGGCGGGCCCGTTCGCCTCGCCTCCGAAATTAAAGCCCATGGCACCTCTCGCTTCCGGGGCCCCGAAGAGTCGCGGTAATATCACTTTTAACGCCGCGAATCCCGCCGCGAGAATGTCCACGGGTCCCTACAAAAACGGCGATCCCGCGCACAATCACACGTGCATTCACTGCGGAATGATCTACAGATACAGGCTTAATATGCTCAAGCACGTGGAGCTCTGCAAAAAAACTGCGATCGCCGATCGCGTGAGTTACCGGTGCGTCGAATGCGGTATGACATTCCTCGCCCTCAAGAGATTCCAGTCTCACCTCAGCGGCGAGCACAAGACCCGCGAATTCTCCTGTTATCACTGCAAATCCAAGTTCAACGACGCGAGACTCTATTCCGAGCACTACCGTAAACACCGGGTGAATCATGCGCGAGCGATCGTTCCGCGGAATTGCGGCGATAAGGAGAGTCCCGGGCGGGGAAAAATCGCCGGGAACTCCAGGGAAAAGCATCAAAATCAGGGGAAAGCGATTGCGAAGAACGCCCCGGTTTTCACGTGCGTTATTTGCCCCGGAAGCGCGTTTACCTCGAGGAGTCTACTCGCGGAGCACCGAAAAATTCACCTCAAAATGAAGATATATTCGTGCGCCGTCTGCCGGCGGATGTTCGGCAGAGCTTCCGCTTTGGAGGCTCACATGGCGGACCACGAGATGGACGTGCCGCCGAGCGAATTGGAGCACAACGCCTCGATTCCGCTTCTCGATCGCGACGAAAAGATGAATATCTCGATGAATTCCGATCCCGGCAGCAGCAACACCGAGTGTCACACGTGCGGCAAGGTTTTCGCCAATTATCCGAACCTCCGGAGGCACATTCGCACGGTTCACGACGCAATCGGACGCTACAGTTGCTTCACGTGCGCGAAAACCTTCAAAAGCGAGGATCAGTGGAGCGAGCACATGGAGAACGTTCACGAGAATGGCGAGGCTTCGATAACGTGTCCCCAGTGCCCGGAGGAGTTCGATTCGGAGATGGCCCTGGAAATTCATCGTACCAACGTTCACGGCGTCAACGGCGAGGATCATTTGGCCTGTTACATATGCGGCAAGAAATTCGTCAACGAGTCGTCGTTGAGAATTCATCGGGGTCATCATTTCCGGGTGAACTCGAGGCTCAGCATCGGAAATCGTCGGCAGCCGGAGCCGCAGGAGCAGAAATTGCGCGTCGGTGCTTCCGGTTGCACGGGAAAGGTTTCCGGGCCGAGCGAGGCTCGCGACGAGGCGGAAAACGTCGTTGCCGCAAGTTCACCCGTTAAATCACCGCGAGCGAGAAAGTCATTTCCAAATTCGAGCCCCGCTAAGCACCTGCTGAATAATCTGCAGTGCCAAGTGTGCGACGATCGTTTTCCCGACGTTTCCACCCTGAGGAAACATCTCTGGGACGTGCATTGCGCGCGTAACAAGCCGGAAAAGGTGTTCCCCACGGAGGCGCTCCAGTGCGAGCTGTGCACGAACGTTTTGCCGGACGAGGAGAGCCTCGCGAGTCACATGAAGTGGCACGAGAATAATCCGATTTTGAGCAACGGCGCGCGACCGGAAACGCCCATGGAGTGCGACATTTGCGGCAAATTTTACAGCTCCAAAGCGAATCTCTGGAAGCACAAGAAACGTCACAAAGCGAGAAACGTCGCGGCGGCAAAGTTCCGACCGATCGGGAATAACAATTGGGGCGGGAGTGGATTTTGTTGCGCCGTTTGCCGCAAAGTATTCGCCACGAGATCGACCCTGACGAAGCACAAGAGCGCGGCTCACCCGGAAACGGAGAGAGGATCGGTTAAACGATCGGCGCCGATCGGCAACGCCAGAGAGTCCCAGAAAATCAAACCCGTGAGGCCGAAGCTCGATTTCGATACGCTCGTTCAACAGGTCGAATTATCCGGGCTCGAGATGACGAAGAGCGACTCCAGGAAACCCGTGACCTGCGTTCTATGCAGAAAAATCGTTCCCGGGAGACGTGCCCTCTACAAACATCGGCAAGTCGTTCACAAGATAACGATCGGTAAAACGGCATCGAAACCGGATATGCAGATACTCGCGTCGATGAAAGCCGAGAAAAGGAGCGAAGTACCGTGCACCTCGTGCTCCAAGGTCTTCACCAACCTTCCGAACATGCGGCAACACTTCACCAAGGTTCACGCACCGAAAAAACCCGTCGAATACCGATGCACCGTCGAGGGATGCAAACTCGTATACAAAAGCCTCGCCGCGAGGCTCAATCACGAGAAAACCCACTTAAACGTCATGTACACGTGCTCGCTTTGCCCTCGGCACATGCTCAATCGTGAAGCCATGGCCGATCACATGCTGACCGCTCACAAAAGCAACTACGCGATCGGCAACACGAAAATGATGCTCTGTAAGAAAATAAATCTCGACAATTACACGGTTAAAGGTGCGATCGGTAGGCAATGCCCGATTTGCAAAATCAACTATCCGAATTACAAAGCGATGAAGATACACTACCTCAAGGTACACGAAGGAGCAGCATAA
- Protein Sequence
- MEDVPGLENPEIVCRLCLSTEEPISSIFDDQASAVSLVTKIQASLSIEIQISDKLSTLICANCLKRVNEWHIYKEACLRSQEKLQRCLRERMETLPNIKLEPMDVDEPMETLETVPLTSDEEWEDLPDLPVNACLTSMCVEAPRNGELREAPAIKRELTEDEENTTNAEIESVCSRELLLNPMAVSSSKDERVMEADSTQKLVKPKNARGAKKKQRRGPRTHYTGTRRYKQRCSFCQIYLHSKFSYAKHMERFHSGVIVERRPRTKRETLEKKLEIQANGDEVEDVADEMIEDVEDELISLEKDAPLTPVQQNIISQLKTFSCYSCRQNFQDRRSTLNHIRQHMPDLRPYTCIACLTEFADRSIYKLHCGASFQCAMKIALVVPENGTEKYFTCNMCLRPLANRKELLSHLSRHSDRQYEQMMAGPFASPPKLKPMAPLASGAPKSRGNITFNAANPAARMSTGPYKNGDPAHNHTCIHCGMIYRYRLNMLKHVELCKKTAIADRVSYRCVECGMTFLALKRFQSHLSGEHKTREFSCYHCKSKFNDARLYSEHYRKHRVNHARAIVPRNCGDKESPGRGKIAGNSREKHQNQGKAIAKNAPVFTCVICPGSAFTSRSLLAEHRKIHLKMKIYSCAVCRRMFGRASALEAHMADHEMDVPPSELEHNASIPLLDRDEKMNISMNSDPGSSNTECHTCGKVFANYPNLRRHIRTVHDAIGRYSCFTCAKTFKSEDQWSEHMENVHENGEASITCPQCPEEFDSEMALEIHRTNVHGVNGEDHLACYICGKKFVNESSLRIHRGHHFRVNSRLSIGNRRQPEPQEQKLRVGASGCTGKVSGPSEARDEAENVVAASSPVKSPRARKSFPNSSPAKHLLNNLQCQVCDDRFPDVSTLRKHLWDVHCARNKPEKVFPTEALQCELCTNVLPDEESLASHMKWHENNPILSNGARPETPMECDICGKFYSSKANLWKHKKRHKARNVAAAKFRPIGNNNWGGSGFCCAVCRKVFATRSTLTKHKSAAHPETERGSVKRSAPIGNARESQKIKPVRPKLDFDTLVQQVELSGLEMTKSDSRKPVTCVLCRKIVPGRRALYKHRQVVHKITIGKTASKPDMQILASMKAEKRSEVPCTSCSKVFTNLPNMRQHFTKVHAPKKPVEYRCTVEGCKLVYKSLAARLNHEKTHLNVMYTCSLCPRHMLNREAMADHMLTAHKSNYAIGNTKMMLCKKINLDNYTVKGAIGRQCPICKINYPNYKAMKIHYLKVHEGAA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -