Cinc012728.1
Basic Information
- Insect
- Clistopyga incitator
- Gene Symbol
- -
- Assembly
- GCA_947507545.1
- Location
- OX382189.1:1379991-1388020[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.17 18 6.3 1.7 1 23 262 284 262 284 0.90 2 12 0.0014 0.15 12.9 3.7 1 23 289 313 289 313 0.93 3 12 7.7e-05 0.0081 16.9 1.7 2 23 429 451 428 451 0.96 4 12 8.9e-05 0.0094 16.7 1.4 1 23 457 479 457 479 0.97 5 12 0.0049 0.52 11.2 0.1 1 23 488 511 488 511 0.90 6 12 2.3e-07 2.4e-05 24.9 3.6 1 23 516 538 516 538 0.98 7 12 1.2e-05 0.0013 19.4 0.6 1 23 544 566 544 566 0.98 8 12 3.8e-05 0.0041 17.8 1.9 1 23 572 594 572 594 0.98 9 12 9.8e-09 1e-06 29.1 0.5 1 23 600 622 600 622 0.98 10 12 3.9e-05 0.0041 17.8 7.6 1 23 628 650 628 650 0.98 11 12 1.1e-05 0.0011 19.6 1.6 1 23 684 706 684 706 0.98 12 12 9.3e-07 9.9e-05 22.9 2.5 1 23 712 734 712 734 0.98
Sequence Information
- Coding Sequence
- ATGTTTTTATTAATTTTAAAGATTCGAGATGATGGCAAACTTCCGCGCACCATTTGCCCTGGATGTAATATTCAGCTGGAAGCAACGGTGCAATTCTTCGAGTTGCTCGTGGATGGACAACGCAAAATTCGAGAAATGTGGAAACAACAAGTGGATGTTCAGCGAAAAACGGAGCGCGAACGGCTGAGGGTCAAGAGAGAAAGCAACGGACCTACCGAGACTCCTGAAAGCGAAAACTTTTACGGTGAAAATGGCGATCAACAGTTTGCGCAACAGATCATCATCAAAATTCTCCCTGATGGCTCGATGTATGCAGCCGAGCACGACATGAGCTTGCAAATGGAAGGTCTTAGTAAGCCAAGAAGAAAAAGAGGTCGGCCTGCGAAAGCCCTTGTTGATTTGGACAAGAATTCATTGACCGAAGATGCCGGTGATGTAGCGAGTCAAGAAGAAGAAGAAAAGCTGGAAGATGAAGTGGACGAGGTGGATGGTGATGGCAGGCGTCGCAGAAAACGAAAAATTCCGAAGAGATTTTCGGAAGCTGTGCAAGGCAAGGAATTGGAAAGAATATTCAAAGAAGAAGGCGTTATCGACGATGATGACGATGGAGCGGACAATGCTATCGATGATCCTGAAGAACGGGTCAAAGTACCAACGCCAGACGGTCATGAAGAAATAATCGGTCATTTGGAGTCCGAAGAGGGGAAAGATTTGGGTGAACTGGTGATCGTGAATCGGGCCCGAGGTCGAGGACGACCAAAACTGCGAAGGCGTAAAAATAAATTCACCTGCAATTTGTGCGGTCGTGGTTTTCTCCAACGAAGCAGATATATCATGCACAAGAGTTTTCACAAAGGAGTCAAATATCAATGTTCCGAATGCAAAAAGCAGTTCACGAATAAGGAAAACTGCGCGTTACATCAAAAGACTACGGGTCACACCGGTGAAGGAATAATCGATGGCCTGGAGCCTGAGGAAATAGCTACGCAAGAAGTTTCGACGAATCTCTCGGAAAAATCGATTACCGATATTTCTAGCCAAGAAAATACTACTCTCGAAAAATCAAGCTCAGAACTGTCGAGTCGCGACAATGCGGCTCCGATAGAAAATTTAAGTAGTGAAAATTCAGGCCTGGAAAAACCTAATTCCGAATTAATCGAGGAAGAGTTGGAAGAAACGGAAAAAACCGAGGAGAGTAATACTAGTGGTACCAAACAAATTGCTACACAGCAAGCGAATGTAACGCAACCCCAGCCGCCAGCTTCCGAAAGTTTGAAACGATTGGAATGCGAAAAATGCAACAAATGTTTTGAGTCAAAAGAAATGTACGAAGTTCATTTAAAAAGTGTTCACAATGGCGACAAACCTTTCGCCTGCACAGTCTGCAGCAAGACATTTGTTTATCACGCGAGTTTAAAGGAACACTTGTTATCACATGAGGGGAACAAATCGGACAAGGGATATCCTTGCGACATTTGCGGTAAAATATTGAATCACCCGAGCTCGGTGATTTATCACAAGGAAGCAGAGCACAACGGTCGCCGTTTTGTCTGCAATAAATGTGGCAAGAGCTTCAAGCACAAACAGTTGTTACAGCGGCATCAACTTGTTCACTCGGACGATCGCCCATACGTATGTGGCTCGTGCAATGCGAGCTTCAAAACTAAAGCCAATCTCATCAATCACCAATTCACTCACACCGGTGAGAAGAAGTACTCTTGCGAACTTTGTGGACAACAGTTTGCCCACAAGACCAGTCTCACCTTGCATTACAGATGGcacacaggtcacaaaccgtactcttgcgaagtctgcaacaagagtttctcacaaaacggaaatctgcaagagcacatgagaattcataccggtgagaagccttattgttgcgaccactgcggtcgaaagttcactacctcctcgcagttcaagcttcacgttaaacgccacaccggcgagcggccatggaaatgtgaattttgcgccaaaacgttccttcacaaagacacttggaaatgtcatgttcgtagacataaaggtgaacgacctttccagtgcgcgcattgcaatcgcgggttcaccgagcaatgggctttgaaaaaacatctccgactgcataccggcgaaaaaccatattcctgtgacttttgtgggaaagcgtttgccgattgttcaaaccttACGAAACATAAGAAGGTTCATCGCGATAATAAAGCCATGCCTGCGACCGATTTAGCGAAAACAGCTGCCAGCGGTGAATTGTGGCAAATTTTACCAGCGTCCAATGACGGCGATGAACAATCCCTCAGTGAGCATATAGCCATCGCCGGCGAGGAAGCCTCTGAGGATGGAATACCGCAGATCATCTACGTCTCTTACCAAGATCCGGACGATCCGAATCAGTCTCGAACGTTACATTTCGTCGACGTAGGTGTGATGGAAGATAAAGAAGGAATAGCAGCTGTAGCCGCTGGACAGTCACTGCCAACGCTAGACGTTGAAGATCCGGTCCAGGGTATTGCTAAACAAGCTACTCAGGAGACCGCACAACAAGACTCAACGAGAGATATGGAGATGGAACTCGGTGAATCGAATCTTCAACTTCAGATTACTGACGAGGAAGGGAATCCCATTCCTCTTTCGATACAAGACGCCCGGCAGTTACTCTCAGACGGACGATTTGTTAGCCAATTGAACGAAGGACAGGCTATTAGAATTTCCGATGAATTAGCGCAACAACTAAATGTTCATGTTAACCAAGGGGTTGAGCTGGAAAGCATCGAAAATAACACAGCAGCTACATCATCCGATCTCATCGGTTCGGCTAATCAAACCGATGCCGACGCAATCGTCAAGGTTTTGGAGGACGAAGACACAGATGCAACGGCGGTCGCGGCGGTTAATCAGATGACTGGCGAGCCGGAGATCAATGACGGAGCGCAAACGATTGAATTCACAACCCAGGATGGCCAGAAAGTTCGCCTCGTGACTTCATATCACGTAGACCCGATGCAACTCGCGTCCGAGTACCTGACCATAGTTTAG
- Protein Sequence
- MFLLILKIRDDGKLPRTICPGCNIQLEATVQFFELLVDGQRKIREMWKQQVDVQRKTERERLRVKRESNGPTETPESENFYGENGDQQFAQQIIIKILPDGSMYAAEHDMSLQMEGLSKPRRKRGRPAKALVDLDKNSLTEDAGDVASQEEEEKLEDEVDEVDGDGRRRRKRKIPKRFSEAVQGKELERIFKEEGVIDDDDDGADNAIDDPEERVKVPTPDGHEEIIGHLESEEGKDLGELVIVNRARGRGRPKLRRRKNKFTCNLCGRGFLQRSRYIMHKSFHKGVKYQCSECKKQFTNKENCALHQKTTGHTGEGIIDGLEPEEIATQEVSTNLSEKSITDISSQENTTLEKSSSELSSRDNAAPIENLSSENSGLEKPNSELIEEELEETEKTEESNTSGTKQIATQQANVTQPQPPASESLKRLECEKCNKCFESKEMYEVHLKSVHNGDKPFACTVCSKTFVYHASLKEHLLSHEGNKSDKGYPCDICGKILNHPSSVIYHKEAEHNGRRFVCNKCGKSFKHKQLLQRHQLVHSDDRPYVCGSCNASFKTKANLINHQFTHTGEKKYSCELCGQQFAHKTSLTLHYRWHTGHKPYSCEVCNKSFSQNGNLQEHMRIHTGEKPYCCDHCGRKFTTSSQFKLHVKRHTGERPWKCEFCAKTFLHKDTWKCHVRRHKGERPFQCAHCNRGFTEQWALKKHLRLHTGEKPYSCDFCGKAFADCSNLTKHKKVHRDNKAMPATDLAKTAASGELWQILPASNDGDEQSLSEHIAIAGEEASEDGIPQIIYVSYQDPDDPNQSRTLHFVDVGVMEDKEGIAAVAAGQSLPTLDVEDPVQGIAKQATQETAQQDSTRDMEMELGESNLQLQITDEEGNPIPLSIQDARQLLSDGRFVSQLNEGQAIRISDELAQQLNVHVNQGVELESIENNTAATSSDLIGSANQTDADAIVKVLEDEDTDATAVAAVNQMTGEPEINDGAQTIEFTTQDGQKVRLVTSYHVDPMQLASEYLTIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00414508; iTF_00653030; iTF_01497652; iTF_01207562; iTF_00459957;
- 90% Identity
- iTF_01497652;
- 80% Identity
- -