Basic Information

Gene Symbol
ECU06_1150
Assembly
GCA_947507545.1
Location
OX382187.1:863404-869318[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 31 0.0098 1 10.3 0.1 2 23 408 429 407 429 0.96
2 31 2.1e-06 0.00022 21.8 1.0 1 23 439 461 439 461 0.99
3 31 3.4e-06 0.00036 21.1 1.1 1 23 467 490 467 490 0.95
4 31 0.00044 0.046 14.5 0.9 1 23 496 518 496 518 0.98
5 31 0.0025 0.27 12.1 4.5 1 23 524 546 524 546 0.96
6 31 0.0014 0.15 12.9 2.3 1 23 552 574 552 574 0.96
7 31 0.0051 0.55 11.1 0.9 1 23 580 602 580 602 0.98
8 31 0.19 21 6.2 0.4 1 14 608 621 608 622 0.90
9 31 3.8e-05 0.0041 17.8 0.1 1 20 686 705 686 707 0.94
10 31 0.0044 0.46 11.4 2.0 1 23 763 786 763 786 0.97
11 31 0.0003 0.032 15.0 1.6 1 23 819 841 819 841 0.98
12 31 2.2e-05 0.0024 18.6 1.6 1 23 847 870 847 870 0.97
13 31 5.6e-06 0.00059 20.5 0.4 1 23 876 898 876 898 0.98
14 31 4e-07 4.3e-05 24.1 0.6 1 23 904 926 904 926 0.99
15 31 0.00014 0.015 16.1 0.4 1 23 932 954 932 954 0.98
16 31 0.00011 0.012 16.4 1.0 1 23 960 982 960 982 0.96
17 31 9.3e-06 0.00098 19.8 0.8 2 23 989 1011 988 1011 0.96
18 31 0.00018 0.019 15.7 2.8 1 23 1078 1100 1078 1100 0.99
19 31 0.056 5.9 7.9 0.5 1 23 1108 1131 1108 1131 0.92
20 31 0.00085 0.091 13.6 0.5 1 23 1137 1159 1137 1159 0.98
21 31 8.2e-05 0.0087 16.8 4.7 1 23 1165 1187 1165 1187 0.94
22 31 2e-06 0.00021 21.9 0.2 1 23 1193 1215 1193 1215 0.98
23 31 9.7e-05 0.01 16.6 4.0 1 23 1221 1243 1221 1243 0.96
24 31 0.024 2.5 9.1 0.9 1 19 1249 1267 1249 1272 0.87
25 31 3.4e-06 0.00037 21.1 1.6 1 23 1412 1434 1412 1434 0.99
26 31 0.017 1.8 9.5 6.3 1 23 1440 1463 1440 1463 0.96
27 31 0.00015 0.016 15.9 1.1 1 23 1469 1492 1469 1492 0.97
28 31 1.5e-06 0.00016 22.2 1.9 1 23 1498 1520 1498 1520 0.98
29 31 0.0066 0.7 10.8 1.8 1 23 1526 1548 1526 1548 0.94
30 31 1.5e-05 0.0016 19.2 3.7 1 23 1554 1576 1554 1576 0.98
31 31 0.00011 0.011 16.4 2.4 1 23 1582 1605 1582 1605 0.97

Sequence Information

Coding Sequence
ATGGAAGAAGCAATTTTTATACAACCGAGGAACATTGTATACAGCCAAACAATAAAAAGTCAAAATTCTGACGTTACACTTATGGAACTCAAAAAAATGGAGTGCGATGCGAGTCCCTCGCAAAGCGTCAAACGGTACGAGGCGATCGAGGAAATTCCCAATTGGGAAAACACCTGCAGAGTCTGCGCTAATTGCAGGGATCATATGATACCGATATTCGAAAACGAAGGAGTCGAACACAATTTAAGCAACAAAATTCACACGTATCTTCCAATCGAGGTTTCCAAGACTGACAGTTTGCCTCTTAAACTGTGTTACCACTGCGCCGCAACACTCTTAGCATGGCACGATCTTGTTACGGGCTGTTTGGATGCAGAAAAGAGACTTTTACATATGCAAGCTGAAACGCAACGAAAAGAGCTAATTCAGTTGAAACCCCAGCAAATATCGAGTTCCAATGTTCTTATCGATGGAATTATCACAACAAACGAAGAATCGGGTGAAGATTTTCAATCAATTGCCACTCAGAAATTGCAAAATCCCAGTCTTCCTCCGTCAAGCCATGAAATCCAAAATAGAGAAGCGATTCGGATAAAATACATTGAAAAATCAAATCTCACTGAACTTGTCGAAGGAAATGTAGTCGAGAACGAATTGGTCGACGATCCTGAACCAATAGCACCGGAAATATTGGAAATATCGAGTGTACCGCAGAAGGAAACAGAGTCGAACCTCATTTCTGAACGCAAAGAGCCATGTACAACACAACAATTGGAAGAGACAAGTGAGAATGTGCAGCAAAGCTCTCTCGACCAAGAAACGACGGAAAGGTCCGGTAGAATGAAGAAGCCATTTAAACTGTTGATTGACACGCAGAGTATATGTCGAAGGGGGATAAAAATCAAAATCGAGGTCGGGGACCATAAATCTGTTGCAAAAGACGGTGAAGATTCGACGTGGAGGAGCACGTCGTACCAAAACGTCGAAGATCCTTTGCCAAGGCCAAATTCTCCGGGATTTGCGGAGAAGAGACTCGACTGTCCCGAGGAAACGCTCAAAATCGCGGCTCAAAATTCGCCGGGATGCGAGGGAGTTAAGAACGAAACATTCGCGGAATATAAAAAAAAAGTTTCAGCGGAGAAGTCCGAAGATTCTCAGGATGACGAATCAATGCTGATCGACGGGTCGAATGCCAATGAAAATAGTGCTTCATTGAAGGTGAAATGTACAGTTTGCTTGCGAATATTCAGCGACATAAAGGATCTCCAGATTCACGCGAAAGATCACAAAGAGTTGccggaatcgaggaaaatatatcaatgcgtcgagtgcgacaagagttttcgtctcaaggattccttcgtgcgccatctgagaattcatcgagacgagcggccgtttacttgccacgtttgcggcaaacaattccgagactccggtggcctttcgagacacctcaaagacgttcacgctaaactgaagaatttttcgtgcgacatttgcggcaacagcttctcctcgaaagcgacgcgcgacgatcaccgtcgaactcacacgggcgagaggccgtacgtttgcgaaacctgcaccaagacgttcaagtccaaagcttgtctctacagccacaataaactgcacaccaacgagtttccccatccttgcgtctactgcaacaaaaaatttcgacgccgccaggagatgctcgtgcacgcgacgacgcacacgggagaaaagaattacagctgcgacgtgtgcttcatgcgatttcgcgtgaaaaccgaagtcgccaggcacaagctcacgcactccgaggagaaacccttcgtttgctcgacgtgcggtttgagattccggcaaaatcgATCTCCCGCAACGAGGCAAACAAGGTTCGCATCTTTACGCAGAAAACGAAGAGATTCGTCCCCCGGAAACGGAACCGCCGAATGCGCAAGACATTCTGGCCATTCCAGACGTCGCAACACCGATGATTCACCCAAGAAGCGAGAAACTAAGGTCCTTGAAGAGAATACGAGAAACTCGGAAGCGGATGGAGAGTTTCCCTGCGAAAAATGCTGGAGAGTTTTCACGAGAGAGGCCAATTTGAAGCGACACGCCGCAAGTTGCCGGGGAAAGTGTAAAATCCGAAAATCTACGGTCTCGCTGCAGGAAAAATTGCCCCAAAAAGCCAATGTAACAGCCAATGAGGAGAGCACCGAAACTTGTCGCATTGTCGAAGCGAATTCTTCGGACGAGCGCGAAATCGCAACAGCGAAAAAATCACCTTTGTATCCTTGTCTCTACTGCGACTACACGACGCAAAAGAAAAAATCACTGAATCAGCATACGCTGACCAATCATTCGGACGTATCAGACCCAAAACGGGAGAGAAATCATCGAAGCATCAACAAGGATCTCGTGAGACGTGCGAAAATGGAAGCAAACGGTCGGGTCTATtaccactgcaacgattgcggcaaaaacctcttctcgccctacacgttcacgtggcacgtgagaattcacacgggcgagcggccattcacttgccatctgtgcggaaaacaatttcgcgtcaatcagggcctcgctcgtcatctacgcgagactcacgcgggcatcaaaaaattcccgtgcgatctttgcggccgtatgttctcgacgaagcgaaacgtcgaggatcacaggcgaatacacaccggcgagcgtccgtacgtttgtaacgtttgcggcaaagccttcaagcaaaaagcctcgctcttcgtgcacaatcgtacgcacacggacgttttcccgttcaagtgcagctactgcggacaaggatttcgcacgagacctccgctcgtcgttcacttgacgaagcacacaggcgaaaagccacacgcttgcgacatatgcgagcgcgcttttcgcatcaagtacgagctaaagcgtcatcggcttatccacttcgacgaaaaaccttggcaatgctcggattgcggTCTCTCGTTTCGCCAGAAACGCTACTTGGTTAATCATAAGAGAGTCAATCACAACTGCGGCACGACGAGTGAAGAAAAACCGGCGCAAGCTGCGAATCACGACTCTGTGACCCAGGAAAAAAATACAGGACCACCGGAAGGAGTTTCGAGGGAAATAAAAGAAGAATACCCGAAGAAGCGCAGCAAACGAACCCCGGAACAACAGCTCGAAGTGGCGCACTCGCGAATTCTCAAGGACGGCATAACTCTCTACAAATGTCGAGATTGTGAAAAGCATCTATCGACGGCGTATAATTTGCTCGTTCATCGGAAAagccacagctgcgaaaagccgcaaagccacccgtgcagcggatgcagcaagagctttggctcagttgccattcttaagagacacaatcgagaggttcatttgggaagaaagaattatccgtgcgatatgtgcggccgaagattcgccactaaaatctcgcgggacgagcaccgcagatctcacaccggcgaacggccgcatatttgcgacacttgcgggaaatccttcacccaaaagtcgtcgcttcacgtgcacaaactttttcacacttcctatttgccatatccgtgcaccgaatgcgacatggcgttcagaaggaaacaggatcttgaaaagcatctgttaattcacacgggcgaaaggccacacgcttgcggaatatgcgaccgacgttttcgcacgtgcggtgctctgagtcgtcacagaaagacccacaccaaattgtatccgtacgtttgcgagcagtgcggatcgaaattcagccaaaaacggtatctcaagttccacgtTGGCAATATCCACGAATTTGTGAAAAATTCTAGCGCCACGTCGGCCCCTTTTGCACCCAAAAGTCGCTCTGACAAAAATACGGAGAAAAAATCGTGGACTCTGAATACGGAAAGCTCCGACTTCGCGGATTTTCAGAAAGCCTACGGTAAATTTTTTGGTGCTGGTAGAATTTCCACGAGGGACGTTTCCGAAGATGAAGCCAAAGCGGACGAGAGAATTGTACCAAGCACTCCAATCACTCGCAGCAATGAGGCATCGATACAAGGCGAAATTTCTGAAACTATTTTGCCCTCCAAAGACAAATGTGAAAGCACACGTTCTTCCAAAGCGTCGATGACCCGCGAAATGTCTGCTGGACAATTAAACGAAAAGGAAGAGGATTCCAAGATCTCGAAGACGATGAAGAAGAAGCGCATTTCGgagggtccgtacacgtgtgatttgtgcggcaagaaatttcgattgcgggacagcctcaagagccacacgcgaattcatacaggagaaaagcaatttacctgccacatatgcggcaagcaatttgggcaaactggttgtctctactatcacctgaagcacgttcatgggggagtcaaaaatcattcctgcgacatatgcggcagatctttcgcgatgaagacgaccatggaggaccaccggaggtccattcacaccggcgaacgtcccttcgtctgcgactcctgcggcaaaactttcaagaccaaatcgtcgctctacattcacagcagaacgcacacggaatcgtttcctcatgagtgcaaatactgcaacaaggtcttcagatggaggcaacagctcttgggacacttgaccatacacacaggcgaaaagaatcacagctgcgacgtgtgcggcaaagctttcggcgtgaaaaatcatttaacgaggcacaaacgcactcactcggtggaaaaaccttacaattgtcaacaatgcggcatgaactttggacaaaaaaggtacctaacgacgcaTCAACGATCACGACATAAATGA
Protein Sequence
MEEAIFIQPRNIVYSQTIKSQNSDVTLMELKKMECDASPSQSVKRYEAIEEIPNWENTCRVCANCRDHMIPIFENEGVEHNLSNKIHTYLPIEVSKTDSLPLKLCYHCAATLLAWHDLVTGCLDAEKRLLHMQAETQRKELIQLKPQQISSSNVLIDGIITTNEESGEDFQSIATQKLQNPSLPPSSHEIQNREAIRIKYIEKSNLTELVEGNVVENELVDDPEPIAPEILEISSVPQKETESNLISERKEPCTTQQLEETSENVQQSSLDQETTERSGRMKKPFKLLIDTQSICRRGIKIKIEVGDHKSVAKDGEDSTWRSTSYQNVEDPLPRPNSPGFAEKRLDCPEETLKIAAQNSPGCEGVKNETFAEYKKKVSAEKSEDSQDDESMLIDGSNANENSASLKVKCTVCLRIFSDIKDLQIHAKDHKELPESRKIYQCVECDKSFRLKDSFVRHLRIHRDERPFTCHVCGKQFRDSGGLSRHLKDVHAKLKNFSCDICGNSFSSKATRDDHRRTHTGERPYVCETCTKTFKSKACLYSHNKLHTNEFPHPCVYCNKKFRRRQEMLVHATTHTGEKNYSCDVCFMRFRVKTEVARHKLTHSEEKPFVCSTCGLRFRQNRSPATRQTRFASLRRKRRDSSPGNGTAECARHSGHSRRRNTDDSPKKRETKVLEENTRNSEADGEFPCEKCWRVFTREANLKRHAASCRGKCKIRKSTVSLQEKLPQKANVTANEESTETCRIVEANSSDEREIATAKKSPLYPCLYCDYTTQKKKSLNQHTLTNHSDVSDPKRERNHRSINKDLVRRAKMEANGRVYYHCNDCGKNLFSPYTFTWHVRIHTGERPFTCHLCGKQFRVNQGLARHLRETHAGIKKFPCDLCGRMFSTKRNVEDHRRIHTGERPYVCNVCGKAFKQKASLFVHNRTHTDVFPFKCSYCGQGFRTRPPLVVHLTKHTGEKPHACDICERAFRIKYELKRHRLIHFDEKPWQCSDCGLSFRQKRYLVNHKRVNHNCGTTSEEKPAQAANHDSVTQEKNTGPPEGVSREIKEEYPKKRSKRTPEQQLEVAHSRILKDGITLYKCRDCEKHLSTAYNLLVHRKSHSCEKPQSHPCSGCSKSFGSVAILKRHNREVHLGRKNYPCDMCGRRFATKISRDEHRRSHTGERPHICDTCGKSFTQKSSLHVHKLFHTSYLPYPCTECDMAFRRKQDLEKHLLIHTGERPHACGICDRRFRTCGALSRHRKTHTKLYPYVCEQCGSKFSQKRYLKFHVGNIHEFVKNSSATSAPFAPKSRSDKNTEKKSWTLNTESSDFADFQKAYGKFFGAGRISTRDVSEDEAKADERIVPSTPITRSNEASIQGEISETILPSKDKCESTRSSKASMTREMSAGQLNEKEEDSKISKTMKKKRISEGPYTCDLCGKKFRLRDSLKSHTRIHTGEKQFTCHICGKQFGQTGCLYYHLKHVHGGVKNHSCDICGRSFAMKTTMEDHRRSIHTGERPFVCDSCGKTFKTKSSLYIHSRTHTESFPHECKYCNKVFRWRQQLLGHLTIHTGEKNHSCDVCGKAFGVKNHLTRHKRTHSVEKPYNCQQCGMNFGQKRYLTTHQRSRHK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-