Cinc020252.2
Basic Information
- Insect
- Clistopyga incitator
- Gene Symbol
- lola
- Assembly
- GCA_947507545.1
- Location
- OX382173.1:15238296-15241787[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.8 9.7e+03 -3.3 0.1 4 20 102 118 101 119 0.73 2 2 1.1e-08 1.5e-05 24.9 0.1 9 40 410 442 409 447 0.87
Sequence Information
- Coding Sequence
- AtggaggacgaccagcagttctgccttaggtggaacaatcaccagagcacgctcatacaaaacttcgacacactccttgagagcggcacgctggttgactgcaccctggcggcggaggggcagtacctaaaggcccacaaagtggtcctctccgcgtgcagtccatactttgagggcctcctcagcgaacactatgacaagcaccctgtctttatattaaaggacgttaagtttaaagagctaaaggccatgatggactacatgtacaggggggaagtaaatatctcccaagaccaattggcagcactcctaaaagccgcagaatccctgcaaataaaagggctctcggaaagcaaaacgggcggCAGTACCGGCAGCAAGACGGCAGAGTCATCGAGGCCACTACAAAAAGTCGTACCACAGCCTTCGGCACCGTCGTTGGACATTCCACACGCGTCTTCCGGTCTCACAATAGAAAAGAACAGCAAAGTTCCTAGGCAGAGTATGGCACAGGGCTCCGTAAGTGACCTACCCGAAGACTCGGCCAGTCCTCAGCTACCTAAGGGGCTCTCCTCCAGGGAAGGCTCGCAAAGTCCAACCTCAAGAAAAAGAAAGAGGTTCAGAAGAAGAAGCGTAGGTGACGACAACTCTATGGAAAATCACGAAGCGTCGAACTCGAGTGACATGCCACAACAAATGAGCGTACCGTCACTCGGTGTTGCTCCGGTTGCGGACGAAAAGTCTCACGCCGACCCCACAGATTCTCTCGGCAGGTCAGCTCTCATGCAACAGCTGACCAAACCCGCCGACGAACTGCTTCAATTGCCACTCGAAAAACCCGAACCTACCGATAGCCTGATCGAGCCAAAGTCCGAGTACCTGGAGGAAAACGAGGAAAGTGTCGAAGACCTGACGCTCGACGATGACATGAACGACCTCAATGAAATGGAACAAGACAACAACAGAGCCGGCCCATCCCACGATCCCTCCCAACATCCTGGTGGGGGGGCGGGATCGCGGTCTCGTACTTCGAGAGGTGGTAATTCGGTTGTTGGCGTTGTTGGCGGCGCCGGCGGTGAGGCCCACTGGGCCTCGCATTTCCTCGATTGTCATAAAAAGGCCCCGAACACGAGACGACCGCGTCCTGACGTTGACGTAGCCGCGTTGCTCAAGTCGCTGGCCAACAAACAGGGCCGAAAGTATAGTTTAGACTCAGTTAAAATGTCGTTGGAGGCTATATTGCAGCAGGGCGTTAGCACCACCCACGCATCGGAGATGTACGGCATTAATCGATCGACACTGCAATTTTATCTGAAAAAATTGAACGTCGTGAGACGACGTTGGAGACAACCGACAACCCTAGTACCGCATAGACAGTCTTAA
- Protein Sequence
- MEDDQQFCLRWNNHQSTLIQNFDTLLESGTLVDCTLAAEGQYLKAHKVVLSACSPYFEGLLSEHYDKHPVFILKDVKFKELKAMMDYMYRGEVNISQDQLAALLKAAESLQIKGLSESKTGGSTGSKTAESSRPLQKVVPQPSAPSLDIPHASSGLTIEKNSKVPRQSMAQGSVSDLPEDSASPQLPKGLSSREGSQSPTSRKRKRFRRRSVGDDNSMENHEASNSSDMPQQMSVPSLGVAPVADEKSHADPTDSLGRSALMQQLTKPADELLQLPLEKPEPTDSLIEPKSEYLEENEESVEDLTLDDDMNDLNEMEQDNNRAGPSHDPSQHPGGGAGSRSRTSRGGNSVVGVVGGAGGEAHWASHFLDCHKKAPNTRRPRPDVDVAALLKSLANKQGRKYSLDSVKMSLEAILQQGVSTTHASEMYGINRSTLQFYLKKLNVVRRRWRQPTTLVPHRQS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01418424;
- 90% Identity
- iTF_00459675;
- 80% Identity
- iTF_00343275;