Cinc012385.1
Basic Information
- Insect
- Clistopyga incitator
- Gene Symbol
- ttk
- Assembly
- GCA_947507545.1
- Location
- OX382171.1:17916789-17918827[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.1 7.3e+03 -2.9 0.0 2 18 199 214 198 216 0.70 2 2 8.3e-12 1.2e-08 34.9 0.0 1 40 354 393 354 397 0.94
Sequence Information
- Coding Sequence
- ATGGGTTCATCGGGCAATcatttttgcgtgcagtggaacaaccaccagaaaaacttgctcgcggttatgagcgaactcttgcagaacaacgcactgacagacgtgacattgggtgtcgacgatggccggtcggtggaatgtcacaagatgatattggccgcttgctcgtcgtacttccaggccctcttcactcagtatccggcgaaacatccgttcgtcgtactttcgggcgttaaatatccggagatcgtgaggatagtcgagttcatgtacaagggcgaggtcaacgtagcccaggatgagctggacgctattcttaaggttgcggaggcgttgcaggtcaagggcctCATCGAAGCCAACGGATGGTCGCCGGATACGGATGTGCCACCGTCGCCGGTCAACAATGCCACCAACAACAAGGCTCATCCCACTGAAACCACGAAGAACACTAGACATCGTAGAAAAAGTTCTTCGCCCGCTCATTCGACGAGCAAACCTTATCACGTTCGTGAAGAATCGTCTGCCGGTCGTGAAAACCCAACGATACCATCGACGCCCACGTGGCCATTGTCTCAAGGTCTTCCTCTTGGTCCCGAGGATTTGGCAGCTGCTGACGCCGCTTTCCAGTCGTCCCTCTCCACGAGATATCCTTCTGTCCTCGAAACTCGTTACGAAAAAGCTCCGGATACTCCAGCGCCTCGGAGTCGTAAGCGAAAAATGTCCAGGGAAAATGTGATAAATCGTGGAACAGCGATTTTACGAACGGCTCTCAAACAAGGCCACGCTGTTGGTCCTCTTCAAGTAGCCACGCCGATTTATCCGGAACATCATCACACGCGATACAGCAGCCCAGCGAACGGGTCCACGAATGAGGAAAGGAATGATGGACAGAGCAGCGTTGATCTGTCCTACCGATGTCCAGATCATAGCCCACGGACCCGCGATGCTTCCAACGTCAACGGCGCCGACGACACAGCGTTTTCTGAGGACTCGAAAGCAGGTATCACGAGTTACACCTCGGCTCAGAGTCACGAAGGAAAACGCTACAAAAAGTACACCAGAGACGATTTGTCCGACGCGATACAAGCTGTGAAGGAAGGCATGAGCGCAAATAAGGCCGCGGTGCTTTTTAAGGTACCGTCCAGAACTCTCTACGACAAAATAAAGAAGCTCGGTTTCACCAATCAGAAACACAGACGCAGTGGAAGTAGCGGCAACAGCAGCAGTGCCTGTTTTCCATATGGTATAGGGGGCAACGTGGATGGCAGTATTTATGGACACACGATGGAAATCGACAATGACAACAGCAACGTGTCGACGGAAACTGCAAGTAATTTGCCGGAGGCTTGTTATAGCGAAAATCGTGACACTTCTGCCGACGGAAAGGAAACCGATCGAAAAACTTCCAGTCCTCTGAATTGTCCTCGTTCTCGGTCACCATTGCCACTGAAATCTCAACGACAGGAATCAGCCTCTGCGGATAGCGAAAATAAGAATGATAACGAGGTTCAGGATCTCTCGGTGAGCCGCAAATCCGAAATTTCCTTTTCGATTCCTCCAAATATCAAGATCAAAGAGGAAAAGGTCCAAGAGGATAAATCCGTGCATTATGCATCTGCGGAGTGCAATGTGTAG
- Protein Sequence
- MGSSGNHFCVQWNNHQKNLLAVMSELLQNNALTDVTLGVDDGRSVECHKMILAACSSYFQALFTQYPAKHPFVVLSGVKYPEIVRIVEFMYKGEVNVAQDELDAILKVAEALQVKGLIEANGWSPDTDVPPSPVNNATNNKAHPTETTKNTRHRRKSSSPAHSTSKPYHVREESSAGRENPTIPSTPTWPLSQGLPLGPEDLAAADAAFQSSLSTRYPSVLETRYEKAPDTPAPRSRKRKMSRENVINRGTAILRTALKQGHAVGPLQVATPIYPEHHHTRYSSPANGSTNEERNDGQSSVDLSYRCPDHSPRTRDASNVNGADDTAFSEDSKAGITSYTSAQSHEGKRYKKYTRDDLSDAIQAVKEGMSANKAAVLFKVPSRTLYDKIKKLGFTNQKHRRSGSSGNSSSACFPYGIGGNVDGSIYGHTMEIDNDNSNVSTETASNLPEACYSENRDTSADGKETDRKTSSPLNCPRSRSPLPLKSQRQESASADSENKNDNEVQDLSVSRKSEISFSIPPNIKIKEEKVQEDKSVHYASAECNV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00343293;
- 90% Identity
- iTF_00343293;
- 80% Identity
- iTF_00343293;