Cinc012384.1
Basic Information
- Insect
- Clistopyga incitator
- Gene Symbol
- lola
- Assembly
- GCA_947507545.1
- Location
- OX382171.1:17894070-17896015[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.2e-14 6.1e-11 42.2 0.1 1 45 375 419 375 419 0.96
Sequence Information
- Coding Sequence
- ATGTCGGACATGGGGGCTGCCGGAGAACagcagttctgtctgagatggaacaaccaccaagcgaatttcatccaggccttcgagggcctgttggaggaggaaaccttcgcggacgtgactttggccgttgcgggggtgatcctgaagtgccacaagatggtattggccgcctgctcggcttacttcaagacgatcttctccgacgtgccctgctcgcatccgattgtctttctcaaggacgtcaaagtcagcgagatcaaagccattctcgagtacgtttacaagggcgaggtgaacgtcgctcggaacgaattggcggccatgttgaaggtcgcgcagatgctgcagatcaagggcctCATGAACACGGACCCGGAGCTTCCTCCGACGGAGCGGCCTCTGCCGGAGCGGCAAAACGAGGAGAGGCCGAGCGAGGAAGCGATTAGCACAAGCACGAGCAGCAGTCACAGCGCCCTGGCTTCGGATCACGGGGTCGGAGCTCCCGGAGGTGGCGCACATTCGTCGCCTCCTCATTCCACGAGTTCGCCGTATTACGGCTACGGAAAGTCCCCGAATACGCGTGAAAATGGCGCCAGATTTCCGCTTCCGGTTTGGGCTCTCGCGCAGGGACTTCCGCTGGTCGGCCAGAATCCAGCGGCGGTTTCCGCGGCTCTTCATCCATCACTCGCCGGCAGACACTCCTCCATATTCGGCAGCCTCTACGAGACCGCAGCCGAGGCCTCAACCGGACACGGCAATCGCAAGAACAAGATCACCGCGGCCTCGATGATGCGAAATCACGACACGCCGATCCTGAGAGGCGTCCTTGGCCAGGTACACGCCGACAGCTCCCAAGCCCCTCAGCATATTCCCTCCGACGTCCACGAACCGCATTATCGAACTCACAGCAACGGATCCGCTGACAATGGATCCGAAGGCAGACGCAGCAGCATGGATCTCTCCAACGGACGTCACGCTCATAGCCCTTACGCCACCGGAGCTTCCATGATGGACGAGGACGAGAAGAAACCATCGCCTCAATCGTTCACCGAAGACAAAAAAGCAGCTATCGCCAATTACGTGCCAAATCAGAAACCAGAATGGAAGCGTTACAAGCAGTACACGCGAGCCGACATAGCAAACGCTATTGCGTCTGTGAGGAGCGGACTGAGCGCACTGCAGGCGGCCCGAAAATTCGGAGTGCCTTCGAGAACTCTGTACGACAAAGTGAAGAAATTAGGGATAACTACCTCGAGGCCCGGAAGACGCACGACCAACGGCAGCGGCGCCTGCTTTCCCTATGGCGTCGGGGGAAACGTTAACGGAAGTATATACGGAAATCTCTCGGAAAATGATCAGGACAACGGCAGTGGAATGATAGAAAATCCGTCGGCGGTGTTGGAGACCTCTTACGCCGGAAGTCGCGACAATTCTGTGGATCGCGATACCGCAATGGACCAAACGAGAAGTCCCAGCCCTCCGCTCGCCCTTTGCTACCAGCCACCGTCTCACCAACAGCAACAGCAGCAGGAGCAACGCGATCAGGCGAGCGATAACGAGGTCGAGGATCTCTCGGTACCTCGTAGATCGGACGTCCGCGTTATCATGCCACCGAGCGTCACGATCAAAGAGGAGGCATAA
- Protein Sequence
- MSDMGAAGEQQFCLRWNNHQANFIQAFEGLLEEETFADVTLAVAGVILKCHKMVLAACSAYFKTIFSDVPCSHPIVFLKDVKVSEIKAILEYVYKGEVNVARNELAAMLKVAQMLQIKGLMNTDPELPPTERPLPERQNEERPSEEAISTSTSSSHSALASDHGVGAPGGGAHSSPPHSTSSPYYGYGKSPNTRENGARFPLPVWALAQGLPLVGQNPAAVSAALHPSLAGRHSSIFGSLYETAAEASTGHGNRKNKITAASMMRNHDTPILRGVLGQVHADSSQAPQHIPSDVHEPHYRTHSNGSADNGSEGRRSSMDLSNGRHAHSPYATGASMMDEDEKKPSPQSFTEDKKAAIANYVPNQKPEWKRYKQYTRADIANAIASVRSGLSALQAARKFGVPSRTLYDKVKKLGITTSRPGRRTTNGSGACFPYGVGGNVNGSIYGNLSENDQDNGSGMIENPSAVLETSYAGSRDNSVDRDTAMDQTRSPSPPLALCYQPPSHQQQQQQEQRDQASDNEVEDLSVPRRSDVRVIMPPSVTIKEEA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01497318;
- 90% Identity
- iTF_01497318;
- 80% Identity
- iTF_00343294;