Cdum002115.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Clepsis dumicolana
Gene Symbol
hb
Assembly
GCA_963691665.1
Location
OY829505.1:21639229-21641438[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 6 0.61 42 5.6 0.8 1 23 230 252 230 252 0.95
2 6 0.15 10 7.5 7.0 2 23 260 281 259 281 0.95
3 6 0.0002 0.014 16.6 4.1 1 23 287 309 287 309 0.98
4 6 0.032 2.2 9.6 5.8 1 23 315 339 315 339 0.93
5 6 0.11 7.8 7.9 0.8 1 21 570 590 570 592 0.83
6 6 0.045 3.2 9.1 0.1 1 21 598 618 598 622 0.89

Sequence Information

Coding Sequence
ATGCTGAGTTGCGCGCCTCCCGCCGGCATGCcgcccgcgcacgccgcgcacgccgcgcacgcgcaACCCTGGGCGTCCCTCCTACAGCCGCCTCCGACTGTGAAATCAGAACCCATGGAAGAAGCGAGTTTATCAAAAGAGCAAACGAGCGGCTTTTACTCCGACGGCTTTCACAGTGCATCACCTTCTTCAAGTAAGGATTCAAACGGTCATTCTCCTCGCAGTGTAGGTAGCGTCGGCGAACCGTTGCCGTTCTATGATAACATGTCCCTGAAAGCCAAGGCTAACCTAGGCATGCACCTCGAATCCTATCGCAACGGAGTGCCATATAGTTTACTTACACCTCCTGGTTTTGAGACTCGAAACACCGATGGGCGCGATTCCTCACCGGGATATAATATTCAATACTCCCCCAGGACTCTAGCCCCTCCAGCACACGTGTCCACACCTCTCATGCGGGCCGATGCTACGCCACCGAAGTCACCTCCAAGAACACCGTCATCTCCTGACCGCGACAACGATCAACGGGCTTTTGAACGGTTCCATGACTCGGGCTTTGAGAGTGCTGCGCAAGGAATGAAGCATGATGGTGAAGATGGGAGAGACGGATCAGGCATGGACGATGACTTTGACGATGAGCCCGGTCTACGTGTACCAGCTGTTAACTCACATGGAAAAGTGAAAACATTTAAATGCAAACAATGTGAATTTGTTGCTGTTACCAAACTGAGTTTCTGGGAACACAGTAAAGAACACATCAAACCAGAAAAAATGCTATGCTGCAGAAAATGTCCTTTTGTTACTGAATACAAACATCACCTGGAATACCATATGAGAAATCATTTAGGTTCGAAGCCATTCCAATGCAGTCAATGTTCATATTCGTGTGTTAACAAGTCGATGCTCAACTCTCACCTTAAATCCCACTCGAATGTTTATCAATACCGATGCGCAGACTGCAACTATGCCACCAAGTACTGCCACTCACTCAAGCTTCATCTTCGGAAATACCAGCATAATCCGGCTATGGTCCTCAATATGGATGGCACGCCTAATCCATTGCCAATAATCGATGTTTATGGAACGCGCCGCGGCCCAAAGCAAAAACCAATCTCGAAAATGTTCGAACAACAAGCAACGATTAACAACAATAACCAACCCCAAGGTCCACCTCCGTCACACCCTCTATTCGGGGCTCATTTTCCTGTAAATTTGCCTTATTTGCCTCCTCTCCTACCTCATACTTTCTTGTTCCCACCGAACAATAATTATGAAACAAGGACTTCCCCGAAACCTGAAATGCTGGCTGAAAAGCGACAGCCGTCACCCATTTCATCTATATTACATCAACGTCTATCTTACGGTGAGCAAAATTCGGAAAATCGTACGACTCCACCGCCTTCTAAATCTCCAGCTAATTCACCACATACACCTACTATATCTCAAAATGCATCCGCTTGCCAAAGCAGTGATGCCCTTGACCTAACGAACACCAAAATGAATGAAACGGAATCTCCTCCGCCAGTAGAACAGCCGATGCCGGTGACTCCCACTACGGCTTTAAAAAACAGGAGAAAAGGACGTGCTTTCAAGCTGCAGCCCGCAGCTCTCCGGCTCCAGCACGAAGACGAAAGGCGCGGTGCTTCGGGGTCTGACTCTGATTCTGATGCCTCAGCTGATATTCCATTGCCTATTACGCGGAATAGTTACGTTTGTCAATATTGCGACATTACATTTGGCGACCTCACGATGCACACTATACATATGGGCTTTCATGGCTACAATGATCCATTTATGTGTAACAAGTGCGGTGAGCGCAGTGCCGATCGCGTGGCATTCTTTATTCACTTGGGGAGAGCTCAGCATGCCTAA
Protein Sequence
MLSCAPPAGMPPAHAAHAAHAQPWASLLQPPPTVKSEPMEEASLSKEQTSGFYSDGFHSASPSSSKDSNGHSPRSVGSVGEPLPFYDNMSLKAKANLGMHLESYRNGVPYSLLTPPGFETRNTDGRDSSPGYNIQYSPRTLAPPAHVSTPLMRADATPPKSPPRTPSSPDRDNDQRAFERFHDSGFESAAQGMKHDGEDGRDGSGMDDDFDDEPGLRVPAVNSHGKVKTFKCKQCEFVAVTKLSFWEHSKEHIKPEKMLCCRKCPFVTEYKHHLEYHMRNHLGSKPFQCSQCSYSCVNKSMLNSHLKSHSNVYQYRCADCNYATKYCHSLKLHLRKYQHNPAMVLNMDGTPNPLPIIDVYGTRRGPKQKPISKMFEQQATINNNNQPQGPPPSHPLFGAHFPVNLPYLPPLLPHTFLFPPNNNYETRTSPKPEMLAEKRQPSPISSILHQRLSYGEQNSENRTTPPPSKSPANSPHTPTISQNASACQSSDALDLTNTKMNETESPPPVEQPMPVTPTTALKNRRKGRAFKLQPAALRLQHEDERRGASGSDSDSDASADIPLPITRNSYVCQYCDITFGDLTMHTIHMGFHGYNDPFMCNKCGERSADRVAFFIHLGRAQHA