Cdum024100.1
Basic Information
- Insect
- Clepsis dumicolana
- Gene Symbol
- -
- Assembly
- GCA_963691665.1
- Location
- OY829529.1:9256913-9263773[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0024 0.17 13.1 0.8 2 23 208 229 207 229 0.97 2 11 5.9e-05 0.0041 18.2 2.0 1 23 235 258 235 258 0.96 3 11 2.9e-05 0.002 19.2 2.1 1 23 571 593 571 593 0.98 4 11 0.0044 0.31 12.3 0.1 2 23 599 621 598 621 0.96 5 11 0.00028 0.019 16.1 0.7 1 23 629 651 629 651 0.98 6 11 0.0001 0.0072 17.4 3.7 2 23 655 676 654 676 0.97 7 11 0.1 7.1 8.0 0.4 3 23 690 711 688 711 0.95 8 11 0.00047 0.033 15.4 1.6 1 23 717 739 717 739 0.98 9 11 0.00073 0.05 14.8 2.6 2 23 746 767 746 767 0.97 10 11 0.001 0.07 14.3 2.2 1 23 773 796 773 796 0.96 11 11 0.17 12 7.3 1.9 2 23 801 823 800 823 0.94
Sequence Information
- Coding Sequence
- ATGGATTTCGACGAGTCTACTGAACAGCTAAACGCCGATTTAAACGACCATAATATATTCTCGAGTCCAGTGCTAGCCTCTAAAAATGAGAGCGATACGTTATTGCCTGGATATAAAGAAGAATTGACTACGAAAAAGGCTGTAGAACTTCTAATCGCAGGGACTCTCAAAACCAAAGTTTGCCGATATTGCTTGAATATTGTCTCCTCCTTGTCGGAACTAGACCAAATACTGCAGGTGGCTGGCACGGGAGCTCTGTACAAGGTGACCATACGGGATATGGTCGCTAGTTTTTACCCTTATAAGGTTGCGTCCGATCCAAactttccaaataaaatatgcgaCAAGTGCCTGAACCGCACAATAAGTGCTTACCTCTTCACGCAGCAGTGTGAACAATCCGAACGGGCACTCAGAAACTGCTTCAATGACATGTATGATAAACTCGAAAAACTTGACCCTTTAGAACGGCCCAAAAAACGGGGCAGACAAAAATTGAACCCAAACTATAACACCTTATACGCTGATCATGAAAGAGTAATCGACTATGCTGAACCAATAATAAATCTAGTCAATGTAAAATCTGTGTCTTTAAGTCAAGAAACAGCCATGTCCGAGTTAGAATGCCCGAAATGTTGGCAGCTGTTCACCAAAATAGAAGACTTAATGCACCATGAAAGAACTCATCCCAACAGCATGTGGTTCAACTGCCGATTGTGTGGCAAATCGTTTGTCAAACGTTTGCAGCTCAAAAGACATTTAAAACAAGAACATATCAACAACAAGACAGAAATAGTACCAGTTGAGTTTAAGGGAGAAGAAAAATTTGAATGTAAGACATGTGATTTTACAAGTCAAGATTACACCACTCACTTGCAGCATATGGAAAAGCATAAATTTCAGACAGTTCTAGAACATTTGGTTGAAAAGGACACAGTTAGAATGTGTGCTGTTTGCTTGGATATGGATAAACAGCTGGAGGATTTGGATAAGATGGTCCGTCTGCACGGAGGATACCCCGGAGTCACCGGAGACAAGTCCTTGTACAGCATTTTGGAGTCTACTTTGCCTGATATGAACTCCCAACACAACTATATTGGGACAAAAATATGCGAAAAGTGCCTTAACAATGCTATAACAGCGTACGTGTTCATTAACCATTCCATTTATACAAGGGATAGACTTAACACATGCATAACCTCCATGCTAGACAGGCTTAACGAAATAAACGAACCAGAAGGTAACATATTTATAGAAATAGCTAATGATTCCATTCTACCAATAAAAGAAGAAAATTACTTTGACGAGAATCTACTACTTGAAGAGGATGACGTTGATGAAACTACACTGAAAGTAGATGTCTTAGAAGATGAATTCAGAAAACCTGATAGTGATGACGATGAAACAAACTCAGAGCCAGAATTAAAGAATTACATCAACACATTCCTCAGAGATGAACATAGTAAAACCATGCAAAATAGTGATGAAGATGTATATGGTGAGTTTAGTGTAAAGAAAGATTATTGTGAATTAGAGATTGAGAATCCAGCTAAACTAGTCACCAAAACTTACGCTAATAGGCGATTAGTGAATGGTTACCAACCCAAATACCCATCAGATAACGAAGGATACAATTCACTGGATGACGTCAGcgaatttttgacatttaaaaagaagaagaaacctattaaacactACTACAAATACAAGTTCCGTTGTCCTCTCTGCAGCAAAGGCTTTGTCACCGATTTCCACTTGCAGAGGCACATTCTCAAACATGTCCCCAGAAAGGTGGAATGTgacatgtgcccagcagtattCAAATCGAAATTCTTCCTTTACGAACACGTCAAAATGGTCCATATATTGGATAAGCCTCTTTACTTCTCTTGCAAGGTTTGCGGTAGGAGTTTCGACAGCGAAGAAAAAGTACAATCGCACGAGAAATCTCATTTATGCACACAGTGTCAACTGTGCGGTAAAATATTCACAACGCAAAAGCATTTTGATAATCACCTCCAAAGGCATGCACACAAATTGAAGGGAGCCAAACATAGTAGCCAAATCTGCAGTTTTTGTGAAAAGGATTACACAAACGACAACAAACTCTCCATTCACGTGAACAAAGCACATTTGCAGATAAAACCTTATTCTTGCGATATGTGCGAAAGGCAATTCTACACGGAACAGAATTTGAGTAACCACAAGAAAATACATAGTTTGAAAACGAAAGAGAGTTGCGAGTTGTGTAAAAAGAGGTTTAATACTCGGAAGAGTATGGTCATACATTTAAGAAAGCATACAGGAGAAACGCCCCATCGCTGTCCGTTGTGTGGCAAAGCTTTTTATTCTGAATTAAAAGCGAAAAAACACATGAAGAACTATCACGGAGGTACTTTATACTGCAAGCTGTGTAAAAGCGTGTTTTCATGCAAATATGACTTGAAGTCTCATGTCATTATGGTGCATAATCACAACGCGTTGTTATAG
- Protein Sequence
- MDFDESTEQLNADLNDHNIFSSPVLASKNESDTLLPGYKEELTTKKAVELLIAGTLKTKVCRYCLNIVSSLSELDQILQVAGTGALYKVTIRDMVASFYPYKVASDPNFPNKICDKCLNRTISAYLFTQQCEQSERALRNCFNDMYDKLEKLDPLERPKKRGRQKLNPNYNTLYADHERVIDYAEPIINLVNVKSVSLSQETAMSELECPKCWQLFTKIEDLMHHERTHPNSMWFNCRLCGKSFVKRLQLKRHLKQEHINNKTEIVPVEFKGEEKFECKTCDFTSQDYTTHLQHMEKHKFQTVLEHLVEKDTVRMCAVCLDMDKQLEDLDKMVRLHGGYPGVTGDKSLYSILESTLPDMNSQHNYIGTKICEKCLNNAITAYVFINHSIYTRDRLNTCITSMLDRLNEINEPEGNIFIEIANDSILPIKEENYFDENLLLEEDDVDETTLKVDVLEDEFRKPDSDDDETNSEPELKNYINTFLRDEHSKTMQNSDEDVYGEFSVKKDYCELEIENPAKLVTKTYANRRLVNGYQPKYPSDNEGYNSLDDVSEFLTFKKKKKPIKHYYKYKFRCPLCSKGFVTDFHLQRHILKHVPRKVECDMCPAVFKSKFFLYEHVKMVHILDKPLYFSCKVCGRSFDSEEKVQSHEKSHLCTQCQLCGKIFTTQKHFDNHLQRHAHKLKGAKHSSQICSFCEKDYTNDNKLSIHVNKAHLQIKPYSCDMCERQFYTEQNLSNHKKIHSLKTKESCELCKKRFNTRKSMVIHLRKHTGETPHRCPLCGKAFYSELKAKKHMKNYHGGTLYCKLCKSVFSCKYDLKSHVIMVHNHNALL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01135131;
- 90% Identity
- -
- 80% Identity
- -