Cdum023819.1
Basic Information
- Insect
- Clepsis dumicolana
- Gene Symbol
- -
- Assembly
- GCA_963691665.1
- Location
- OY829529.1:3171829-3176425[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0096 0.67 11.2 0.1 2 23 285 306 284 306 0.95 2 12 1.9 1.3e+02 4.0 0.2 5 14 383 392 381 396 0.86 3 12 1.9e-05 0.0013 19.8 0.5 1 23 410 433 410 433 0.97 4 12 0.00098 0.068 14.4 1.1 1 23 438 460 438 460 0.97 5 12 0.073 5.1 8.5 1.6 2 23 482 504 481 504 0.93 6 12 0.017 1.2 10.5 0.7 1 23 508 531 508 531 0.96 7 12 0.026 1.8 9.9 0.3 2 23 554 576 553 576 0.93 8 12 1.2e-05 0.00084 20.4 2.8 1 23 588 610 588 611 0.96 9 12 0.00069 0.048 14.8 1.8 2 23 627 648 626 648 0.96 10 12 0.01 0.7 11.2 0.6 1 23 654 676 654 676 0.96 11 12 0.57 40 5.7 2.7 1 22 682 703 682 706 0.90 12 12 0.0011 0.077 14.2 0.1 2 23 752 773 751 773 0.97
Sequence Information
- Coding Sequence
- ATGGAAGATGCAACATCCGTAGAAAACACTAACCCCCAAACCGACTCAAACTATGAGTTGACGGAAAGCATAAACATTAAAGAGGAAATAGACAATAACATAGTTGTAGATGACCAAAATGTTGATATACAAGTTAAAACAGAGGAGGCTGATGACAATCCTTACCAAAATGTACAAGTGGAGGTTAAACAGGAGCCCGAGAACTCGATAAACTTTCGTAAATATATAGAAACTAGAATATTAGAAGAGTTTAAAGTACAAAGCGAAGTTGATTCTATATTACCTATAACACCGACTGAAGAAGAAGATGCAATTGTCAAACAAGAATGTTTAACAGATGATGCACTGATCTCATTTGATTTCCCAACATTTAATGATGCTGGGAGCATGGACTCGGGGAGTGTGGAGGCAGGCAGCATAGACAGCAATGATGCGGTGGCCCTGGGCAATGTGGAAGCCTGCCTCCAGGAAGATGGTGTCAGCGTCAAATATGAAAATGATGTTTATAATGATCCCCACTTCAATGTCAAAGAAGAGAGCGACTTCACAGTGACCGAAACACATCTGATATCAAACAAAGTCATCAACACAACGTCCACAATCACAAATCCGCAGGACGGGCTCACCGAGTCACAAACAACCAAGACTTTAGTCATGGAAATACTGCCTATGACTCACCAGGGCTCTGGACCATTGTCCAAAATATGTAACCCGGAAGAAATCCTACCCACCTCTAATGAATATGAAGACTTTCAACTAAATTCAATTACAGGAAACGAACTAACGCTAGAACAAGAAGCCTATGGTCTTTTAAAAGCGAAAAAACGAAAATTGGACATAGAGAAGTCAGTGCCCTGTCCAAAATGTAGCAACGTTTACAGAAACCGTAATGCGTTAGACAGACATTTGGGTGTTCACGCCACCATTGAGAATAGAGCCATGGGAGTCCTAAAAGGACTTAAAACTCGAAAGCTCAATAAACTTAAAGCCGAGAAAGCTTACATCAAGGCTTGCAAGAAAGAACAGGTTTCGACGAAAAAACAGATCGTCAAAAAGGAAAAAGTCTGCAAGACTCAGTCTTCCTCAGATAAGCCTAAGAAGATTAAAAAGAAAGTTGAAGCTCTCAGGAAAGAAGGCTATGAATGCACGTGCGGTAAAGCCTTCCGAAGACGCAGCCGTATGGAAACTTGCCTGCGGTCTCACAACTTGTTTGCCGAAGTGAAATCTTACCCTTGTCCTACCTGTGCAAAGTCCTTTAAAGACAAAACAGAACTCGCATTGCATAGAAAGCGACTACACAGTAAAAAGAAATTCCCCTGCAAGTTTTGCCCCACGGATTACAACACCCGCAAAGAGTTATTCAAACATTTACAGGCACATCAAAAAGTCCAATTGATGGAGTACAAAGTTATATCAGAGATTGTTAACAGCAAGGAGAAGTTACGGTGCTTCATGTGCTCAAAGACCTGTATGGAGCTCTCGGAGCTGAAATCGCACGTTATGGAAGACCACAAGGAACCATACATTTGCCCTCACTGCCAGAACACATTTCCCAAAATAATAGATTTCGCCAATCATACAAAAGTTTCTCATCCTGAAGTTGAAGGGCAATCAGTCTTAGATGTGTTGGAGGCTTTTTCAAAACTAGCGCAGGCATGGAAGTGTGAGGAGTGCGAACTTCAGTTCCACGAAGCAGATAAACTAGCGCGGCATCAGATAGAAAATCACAGCAGGGAAATAAAGTCCGAGCAGCAACAACAGTTCCAGTGTACGGATTGCCGGAGAGTCTTCATAAGTCAGAAGGGTTTAACATCTCACCGACGAGTACACCACAGCACTGAGGAAACCGAAGCGAGCGAAGTCGTTGAACAGGGAATAATGTGTTTGGAATGCAGAAAAATGTGTAAAGACATGAGCGCGTTAACCTCCCACATGAGACTGCATTCACCGGACAGGAAATACCCGTGTAAATTCTGTGATTTCCGCTTTGCTACTCCGGAGAAAAGAAAAACTCATGCTGAAATACATACAGGAGATATGAAGTATGTGTGTTTTATCTGTGAGTATCAATGTACATCGGAGAACAGACTGAAACAGCACAAGTTGTCACCAAAACATTCGAGTATGAAGGAATATTTGCTTACGGGTAAACGGAACGAAGAGTTTATGTCACAACAGGAGAAAATCAAAGCGTCTCACAGTAAAAGCGttaagaaaaagaagaaagagAAAGACAGGGATGGGGTAGAAGTGTCGTGTGAGGTTTGTGGAGAAAGATTCTCAAGCGAAGAGGAAATGTTGGAGCACAAGCTGACTCACCCGTTCATAGAGTTCCCTAACGAAGATACGCCGAGcagaatattttttaagtag
- Protein Sequence
- MEDATSVENTNPQTDSNYELTESINIKEEIDNNIVVDDQNVDIQVKTEEADDNPYQNVQVEVKQEPENSINFRKYIETRILEEFKVQSEVDSILPITPTEEEDAIVKQECLTDDALISFDFPTFNDAGSMDSGSVEAGSIDSNDAVALGNVEACLQEDGVSVKYENDVYNDPHFNVKEESDFTVTETHLISNKVINTTSTITNPQDGLTESQTTKTLVMEILPMTHQGSGPLSKICNPEEILPTSNEYEDFQLNSITGNELTLEQEAYGLLKAKKRKLDIEKSVPCPKCSNVYRNRNALDRHLGVHATIENRAMGVLKGLKTRKLNKLKAEKAYIKACKKEQVSTKKQIVKKEKVCKTQSSSDKPKKIKKKVEALRKEGYECTCGKAFRRRSRMETCLRSHNLFAEVKSYPCPTCAKSFKDKTELALHRKRLHSKKKFPCKFCPTDYNTRKELFKHLQAHQKVQLMEYKVISEIVNSKEKLRCFMCSKTCMELSELKSHVMEDHKEPYICPHCQNTFPKIIDFANHTKVSHPEVEGQSVLDVLEAFSKLAQAWKCEECELQFHEADKLARHQIENHSREIKSEQQQQFQCTDCRRVFISQKGLTSHRRVHHSTEETEASEVVEQGIMCLECRKMCKDMSALTSHMRLHSPDRKYPCKFCDFRFATPEKRKTHAEIHTGDMKYVCFICEYQCTSENRLKQHKLSPKHSSMKEYLLTGKRNEEFMSQQEKIKASHSKSVKKKKKEKDRDGVEVSCEVCGERFSSEEEMLEHKLTHPFIEFPNEDTPSRIFFK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00156590;
- 90% Identity
- -
- 80% Identity
- -