Cdum026434.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Clepsis dumicolana
Gene Symbol
-
Assembly
GCA_963691665.1
Location
OY829533.1:6415236-6426108[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 0.21 15 7.0 0.9 3 23 351 372 349 372 0.87
2 12 0.1 7.2 8.0 0.2 2 23 529 551 528 551 0.92
3 12 9.7e-05 0.0067 17.5 0.9 1 23 558 580 558 580 0.98
4 12 0.00053 0.037 15.2 5.4 1 23 585 607 585 607 0.98
5 12 5.2e-05 0.0036 18.4 1.3 1 23 613 635 613 635 0.98
6 12 0.0004 0.028 15.6 0.6 1 23 641 663 641 663 0.96
7 12 0.0033 0.23 12.7 0.0 1 23 667 689 667 689 0.98
8 12 0.0043 0.3 12.4 0.3 2 23 694 715 693 715 0.96
9 12 0.0085 0.59 11.4 2.1 1 23 727 749 727 749 0.96
10 12 0.44 30 6.0 2.1 1 19 755 773 755 777 0.87
11 12 1.5e-06 0.0001 23.2 0.5 1 23 781 803 781 803 0.99
12 12 1.7e-05 0.0012 19.9 2.6 1 23 809 832 809 832 0.97

Sequence Information

Coding Sequence
ATGGCCATATATCAGTGTAATTATTATGGTTGTACGAACACCTCCATAGACAGCGTGATGTTCGAATACCCTGTGAACGACTGGTCAAGGTTGAACCTGTGGTTGCTGCATTCAGGTGATACAGCCTTCAATTTGAGGAATTTCAACAACAAATACATCTGCATTACCCACTTTTCTCCCGCCATGTTAAGGTCAAATATTTTTGGCAGAGTCATTCTGGCCGAGGGGGCTGTACCAAAGCACTACCTGggtaaaaatgaaattaattgtGGGCTGAAGATGCCAGATCCTACTTGTGGAGAAAATAAGCCGACTTATGAAAGAAAAGAGTTTCCAGGAGATATGTATTTGGAGAGTACCAAAGGCAATGAACAAGAGCGTCTTTCGATTAAGCCCGCCAAAGTTTACTCTAAAAAGAAAACTTACAAAACTAatgctaataattataatgtaactcAATGGGGCACTCAATTCAACAATGAAACGAAATCTATTAAAGACGAACCTCAAACTACGCACACAGTTATTATACCACAAGACAATGATCCATATGATAAAGTTAAAAACGAAAGTGAAGCAGACCAAGAAGACACCAATGGCACTCTGACAGATACTAAAGTCAAAAGAACCATTCCTGAAAAGTATACAGTTAGTGCTAATGTTAAAAAAGAATTTGATGAGGAATCTGGTTTTAGTATCAATGGTATTATAGATGCAGAAGAATTTAATACAACTATCAAAATTGAAGTGCCAATGACGGATTTGTGTATAAAAACCGAACGGCCAGATATGGTTGATGTTAAAACGGAAAAAGGATTCTTGGAACCTAATAAGCCAGTTGAATTAAACATATTACATTCAGAAGTTGATTGTAAGATAGAAATAGTACAGGAAACATGTCCACAAGAGACTGAGGGATTACTCATAAGATACAAAATGCAAGAAGATAATAAAATGATAATGGATTCTCCGTCACGAGCGCCCGCAACCGCCGCGCCTCGACCGCAGCAGGTTGGCCAACATTGGCGCCAGTTCAAGACACTGTGGTTCTGTGGGGCTTGCAACATCAAGTTCAATTACAAATTTGATCTTCAGCAACACAAAACAGACCAGCATGGAGCGCCCCCCCCAGATCCGCCGACACGGCTCCGTCGGAAACCGGCCAAGCGAGACAAACCGCCATCTCGCACCAACGCGCTCGAGCCAAGGCGACTCCAAGTATTCCAACGGAAACCGACAGAGCGACACAAGCCGTCATCTCGCACCGACGAGCTCGAGCCAAGACGACTCCAAGTATACCCACGGAAACCGACAGATCGAGACGAACCGCCATCTAGCACCGACGCGCTTGAGCCCAGACGACTCCAAGTATACAAACGGAAACCGACAGAGCGGCGCAAACCGCCATCTAGCACCGACGCGCTCGAGTCAAGACGACTCCAAGTAGTCCAACAGAAACCGACGGAGCAACACAAATCCCCATCTCGCACCGAAGAGCTTGAGCCAAGACGACTCCAAGTAGTCCAACAGAAACCGACCGAGCGAGATGAACCGCCATCTCGCACCGACGCGCTCGAGCCAGTGTCCTGTCCCGCTTGCACCGCCGAGTTCAGCTACATGTGCGACCTGCGCGCGCATATGTCGGATGCCCACAGCAGGAACGCGAAGCGGTTTCAGTGTGACGTGTGCCGTGAGAGATATAAGTATAACTACTTGCTGGCCGCCCACATGAAGCAGCATAGCGGCACGAACTACCACTGCGACAAATGCGGCCGCCAGTGCAAAACGCAACGCGGCCTCGAGAAACACCTCAACTCCCACACTATGGAGCGCGTCTTCACCTGCCCCAAATGCGAGCAGATGTTCACACAGCGCACCAACATGCTCAATCATTTGATAAAACACACGCCCGACGAGAAATACCGCTGCGGTACTTGCGAGGAAACCTTCGAAAACTCCACAGATCTGAAATCCCATTCTAGTATACATTTGACGTTTTTTCCGTGCAAAGTGTGCGGGGTTAGATTTGGGGCAGAAGTGGAGTTGGATGCTCATATGAAGGTGCATACCAAGGATCTGGAGTGCACGTTCTGTCTGATGCGGTTCCAGGATGCTGGCGATCTGCAGAGGCACACGGCGACCCATCGGGATATGATGGAGAAGGTACAAGATTTGTCTCACGCCTGCACCCAATGCGGCAAGCGGTTCCTATATCGGAGCATGCTCCTTACTCATGAGAAGATACACAAGCCCGAGCGACCCTTCGCCTGTGAGCTGTGTCCGCAGCGGTTCAAGACGACCAGCGCTCGCAACGAGCACTGCAAAGGACACATGAAGAGTTACAAGTGCGCTGACTGCGGGAAGAGCTTTGCGCGTACGCAGACGCTCGAATTGCATCGGAGGATCCACACCGGGGAGAAGCCGTATTCCTGCCACTTGTGCGACAAaGCGTTTGCGCAGCGCTTCTCTCTGAACAGCCACCTGCAAAGATCCCATGGTCACCTGAAGATCAGGAGCACCAAGAAGTCGAGGGGCCAGCGGAAATCAAAGAGCGAATCAAAGCGGCAGCAATAG
Protein Sequence
MAIYQCNYYGCTNTSIDSVMFEYPVNDWSRLNLWLLHSGDTAFNLRNFNNKYICITHFSPAMLRSNIFGRVILAEGAVPKHYLGKNEINCGLKMPDPTCGENKPTYERKEFPGDMYLESTKGNEQERLSIKPAKVYSKKKTYKTNANNYNVTQWGTQFNNETKSIKDEPQTTHTVIIPQDNDPYDKVKNESEADQEDTNGTLTDTKVKRTIPEKYTVSANVKKEFDEESGFSINGIIDAEEFNTTIKIEVPMTDLCIKTERPDMVDVKTEKGFLEPNKPVELNILHSEVDCKIEIVQETCPQETEGLLIRYKMQEDNKMIMDSPSRAPATAAPRPQQVGQHWRQFKTLWFCGACNIKFNYKFDLQQHKTDQHGAPPPDPPTRLRRKPAKRDKPPSRTNALEPRRLQVFQRKPTERHKPSSRTDELEPRRLQVYPRKPTDRDEPPSSTDALEPRRLQVYKRKPTERRKPPSSTDALESRRLQVVQQKPTEQHKSPSRTEELEPRRLQVVQQKPTERDEPPSRTDALEPVSCPACTAEFSYMCDLRAHMSDAHSRNAKRFQCDVCRERYKYNYLLAAHMKQHSGTNYHCDKCGRQCKTQRGLEKHLNSHTMERVFTCPKCEQMFTQRTNMLNHLIKHTPDEKYRCGTCEETFENSTDLKSHSSIHLTFFPCKVCGVRFGAEVELDAHMKVHTKDLECTFCLMRFQDAGDLQRHTATHRDMMEKVQDLSHACTQCGKRFLYRSMLLTHEKIHKPERPFACELCPQRFKTTSARNEHCKGHMKSYKCADCGKSFARTQTLELHRRIHTGEKPYSCHLCDKAFAQRFSLNSHLQRSHGHLKIRSTKKSRGQRKSKSESKRQQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-