Cdum025994.1
Basic Information
- Insect
- Clepsis dumicolana
- Gene Symbol
- -
- Assembly
- GCA_963691665.1
- Location
- OY829532.1:6870246-6883121[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 3.2e-05 0.0022 19.1 0.3 1 23 255 277 255 277 0.98 2 12 0.39 27 6.2 1.0 1 23 284 306 284 306 0.93 3 12 0.35 24 6.4 1.7 1 23 310 332 310 332 0.92 4 12 0.00026 0.018 16.2 3.8 1 23 337 360 337 360 0.96 5 12 0.088 6.1 8.2 0.1 3 23 367 388 366 388 0.94 6 12 0.39 27 6.2 0.1 2 19 399 416 398 417 0.95 7 12 0.0092 0.64 11.3 0.0 3 23 429 450 428 450 0.93 8 12 0.00015 0.01 17.0 2.5 1 23 455 478 455 478 0.97 9 12 0.00013 0.0089 17.1 0.3 3 23 510 530 509 530 0.97 10 12 1.4e-05 0.00094 20.2 0.1 1 23 536 558 536 558 0.98 11 12 0.00023 0.016 16.3 0.1 1 23 564 586 564 586 0.97 12 12 0.00083 0.058 14.6 2.1 1 23 592 615 592 615 0.96
Sequence Information
- Coding Sequence
- ATGAAAACAGTTAAAGAAGAGTTCACAAATTCGTCTGCAAAGTTGTTGAGTTGTCGAGCTTGTTTGGCCACGGATGTTAAATTGTATAATATTCACGAAAGCAGACTTTCAGATGCATTGTCGCATCTAACTGGGACTGCTGTCTTAGTACTGGACGGCTATCCACAGCACCTGTGTGTGTACTGCTGCGCCACACTTCGCAAATGCATGTTGTTTCGTGCCAGGTGTCTTCGTGCTCAGCAATGCTTTGCACGACTGCACCCTCATGAGCTAACCACCGACTACATAAAAACCATAGACCGCCTTTCACACAGACTGTTGCTAAACCTGACATTAAAAAAACTCGACACCACAGACAATACAGACTCAGTACaagttgatgaaataaaaaaagaagaagacATAGAAAACATATTTCTTGAATCTGATgatttgaaaatagaaaacTTAATCAAAGAACAGGATTATGTTATAGATGATTTTAGCGATGATAATCATGATACTGCTGAACAAATATTTGTTTCCACAAATCCAGTAGCCAATGTTAAGAAGGAGCGGAAAGGGAGAAGGAAAAAGAATGTGACGGAGAAGAGAGTTAAGAGGAAGATCAAGAAGAGAATGTCGGACAATGATTATTTGCCCGACTTTGATTTTGCCAAGTTTGAGAGCAGTTACAATGTAGAGATTATTGCTTTGACAAAGGAGCAACAGCTGGAGGAGATCGCTTTGCGCAAGGCGTCCGACAACTACCAGTACGCGGCGTTCAAGTGCGGGGAGTGCGGGAAGGGGTTCCGCGCCGAGGACGCCTACAACAACCACATGACGCGCCACAGCCCGAGCATGGGCGGGCACGCGTGCGAGGTCTGCCTGGTGCGGTTCAAGCGCGCGTCGCGCCGCCAAGAGCATCAGGACCTGCACCGGCTGAAGTTCCTCTGCAAGGAGTGCAGCTTCGTGTCGAGGAACAGGTACCAGGCAAAGAAGCATTTCGAGTGGCATACAGGCAAGATACATGTCTGCAAACACTGCGGGGCGAGCTTCACCAAGAGCTCGACGTACCTGTCGCACGTGCGCCTGCAGCACCCGGCCATGAACGCGGCGTGCGCGCAGTGCGGGGAGACCTTCGTGGGCCGGCTCGGCCTGCTGCAGCACACGTCGCGCGCGCACCAGCAGATCGCTTCTGTAAAGCCAGAATCGAAATGTCTATCGTGCGGCCTTCAGTTCGAGAGTCGGGACGCTCTCGGCCGCCACTCCGGCGCCCGCGGCTGCGACCCCAGCTTAAGgCCTTGCCTGATCTGCGGCGAGTCGCTGCCGACCGAGGAGCTGCTGCAGAGTCACATCCAAGACCGGCACAATAAGGATCAAttcaagtgcttagagTGTAACAAAACCTTCGCCAGTTCATCGTCCTACGACGTGCATCACCAGCGAGTGCACCTGAACGTGCGCTGGCGCAAGTCGCGCGACAAACGCGCGGCGGACGCGCGGCAGACGCGCCGCGACGAACCCCCGAAGAGGCGGGAAGCCATGTGCGAGATCTGCGGGAAGGCTTGCGAGTCGAACGCTGCGTTGGTGTACCACCAGCGCAGCCACACGGGCGAGCGGCCCTACAAGTGCGCGCAGTGCCCCAAGTCGTTCACCATGCCGCAGGCGCTCATAACGCATCAGCTGGTGCACTCGGACGCGCGGCCCTACATGTGCGCTGCCTGCCCCAAGGCCTTCAAGCAGAAGGTCGCGCTGCAGCTGCACAGCAGGGTGCACACGGGCGAGCGCCCGTACAAGTGTTCGATGTGCGACAGCTCCTTCAAGCAGGGCCCGCACCTGCGCACGCACGTCAAGCTCATGCACAACGTGCCCTGCGACAAGCAACGCCGCGGCGCCAAGCGGAAGACGCTGCAGTAA
- Protein Sequence
- MKTVKEEFTNSSAKLLSCRACLATDVKLYNIHESRLSDALSHLTGTAVLVLDGYPQHLCVYCCATLRKCMLFRARCLRAQQCFARLHPHELTTDYIKTIDRLSHRLLLNLTLKKLDTTDNTDSVQVDEIKKEEDIENIFLESDDLKIENLIKEQDYVIDDFSDDNHDTAEQIFVSTNPVANVKKERKGRRKKNVTEKRVKRKIKKRMSDNDYLPDFDFAKFESSYNVEIIALTKEQQLEEIALRKASDNYQYAAFKCGECGKGFRAEDAYNNHMTRHSPSMGGHACEVCLVRFKRASRRQEHQDLHRLKFLCKECSFVSRNRYQAKKHFEWHTGKIHVCKHCGASFTKSSTYLSHVRLQHPAMNAACAQCGETFVGRLGLLQHTSRAHQQIASVKPESKCLSCGLQFESRDALGRHSGARGCDPSLRPCLICGESLPTEELLQSHIQDRHNKDQFKCLECNKTFASSSSYDVHHQRVHLNVRWRKSRDKRAADARQTRRDEPPKRREAMCEICGKACESNAALVYHQRSHTGERPYKCAQCPKSFTMPQALITHQLVHSDARPYMCAACPKAFKQKVALQLHSRVHTGERPYKCSMCDSSFKQGPHLRTHVKLMHNVPCDKQRRGAKRKTLQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00021670;
- 90% Identity
- -
- 80% Identity
- -