Cdum024999.1
Basic Information
- Insect
- Clepsis dumicolana
- Gene Symbol
- RXLR161
- Assembly
- GCA_963691665.1
- Location
- OY829531.1:85482-95724[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 5e-05 0.0034 18.5 2.5 1 20 797 816 797 819 0.94 2 11 6.4e-05 0.0044 18.1 1.7 1 23 864 886 864 886 0.96 3 11 0.00015 0.01 16.9 1.5 1 23 918 940 918 940 0.96 4 11 1e-05 0.00071 20.6 0.4 3 23 948 968 946 968 0.98 5 11 0.00012 0.0087 17.2 1.3 1 20 974 993 974 993 0.98 6 11 3.1e-05 0.0022 19.1 0.3 2 23 1003 1024 1002 1024 0.96 7 11 2.8e-05 0.0019 19.2 3.0 1 23 1030 1052 1030 1052 0.98 8 11 6e-06 0.00042 21.3 2.5 1 23 1058 1080 1058 1080 0.99 9 11 8e-06 0.00055 20.9 0.7 1 23 1086 1108 1086 1108 0.98 10 11 0.007 0.48 11.7 5.8 1 23 1114 1136 1114 1136 0.98 11 11 0.00029 0.02 16.0 4.3 1 23 1145 1167 1145 1167 0.96
Sequence Information
- Coding Sequence
- ATGCCTGAGTCGGATAACCACAGCAACGTCAGCAACCACCACATGGGACACACGTCAGACATAACCTCTCACACTTCGAATATGTCATCCATTGAAAAGTTAAATGGTTTGGATAATTGGATAAACTGGAAATTTGCCATCAAAATGGTGCTCACTTTGGAAGGATTGTGGACGTGCGTACTCGGCACCGACACAGACGAAACACGTGATGCACGTGCATTGGCTAGAATATGTTTATCGTGTCAACCAAGTTTGTACCAGATTGTACGCGATGCTAAGACAGCTAAGGAAGCTTGGAAACTGCTGTCGGATACTTTTGAGGACAAAGGGCTATACAGAAGAGTACTACTGCTTCGACAACTACATCGAGTCGAATATAGCCACTACTCGAACATGTCCGAGTATATTGAAAGCGTGTTAAAGCTAGTCACACAGCTATCCGACATTGGTAAAACAATTGACGACGAAGAAACTGCGGAAATTCTACTGTCAGGTTTGCCCGAGGAGTATAATGTCCTGGTATCCAGTCTCGAGACAGCGGGTTTGACTACCACCTTGTCCAGCGAAGTCGTCCGGACTCGACTGCTGCAAGAATATCATAGGCGTCACAACGGGAACAATTCGTCAGATAATTTAGCTTATGTAGCTAGTAGAAGAAAGAAATCTACACTATCATGCACATACTGCCAGAAGAATGGACATGCTGCTAGTCGCTGTTTCAAAAAGAAGCGAGATCAAGCCAAGAAGAAAGAAGAGGAACACACTATGTATGCATCTGCATATTCCGCTTCTCATTCGAAGGAGTTCATCGTTGACAGCGGCGCAACATCCCATATGTGTGGAGATCCCACCCTGGTAGAAGAGGCTTTGAAAAAGAAGTGTGTGATTTCTGTAGCCAATGGACAACAGTTGAATAGTGAATTAATTGGTAAGACTGTTATTTCTTCTAATGTATCTTTAGACAATGTTCTCTATGTCCCTAATTTGTCAAACAATTTAATGTCTGTCAGTGAGCATGAAGATGGCGTGCCCACTAGCTGCATCGCCTGCCTTACTGGGAAGATGTGTGAAACATCATTTCCTCAGTCAAGTGCGGGGCGTGCTGCTCATCCCCTGGACCTAATTCACAGCGACATTGCCGGACCAATTCAAGTACCCAGCTGGAGCGGAGCTCGCTACTTGCTCACCTTCACCGATGACCACACAAGGAAGACCTTTGGTTATCTTCTGAAGAATAAATCTGATAATTCTTCTGTGGTTTCAGAGGTGGAGATGACGTCACCACTGTCTGACCTGTACCGCACTTCCGAAGATGTCTCCGAGGATGACGGCGAGGATGGCGTGCTGTCTGGCACCGTCAACCCTCTTCCGCCCTCTACATCTCAAGGAGGAGAGCAGATTACGCCGGAACCTACTGACGCGTCTATCTCTCGTCCCGTGCGTAGTACCAGAGGTATTTTCCCTGAGAGGTTTAACGATTATCATTTAACGTCACTATTGGCCGCAGCTTATTCATCTTTCGAACCACTAACGTTCCACGATGCCATGCAATCACCTGAACAGGATGATTGGTACGGCGCTATGGCGTGTGAGTTCAACTccctgattaaaaataatgcgtGGGAGTTAATTGATCGTCCGCATAATGTTAATGTTCTTAAAAACAAGTGGGTATTAAAGAAGAAGTATGATGCTACAGATGCTGATTGGGCCAATGACATAACAGACCGCAAGTCATATACTGGCTTTGTAGTAAAAATTGGTAATAATGTCATCAACTGGGAAGCTCGCAAGCAACGATGTGTAGCCTTATCGAGCACTGAAGCTGAATATCTCTCTATTAGCGATAGTGCGCCAGAGCAGTTTGGCACGGTGTCTCTAGAAGCGGTGCCTGTGAATGCTGAGGCAGTGTGGAACTGCAGCACAAGCAATGAGATCCTATGGGGCGGACCCGTTGTCAACAATGAAGTTGTGCTGGGCCCGGAACCTGAACTGCTTAAGGATCCAAACTATACATTTGAAGTTGAAGTGAAGATTGAAGATGAGAGTTGTGGTGAGGAGGATATATTCTGCGACACAACAGCCGAAGACATGTTGCCGGAGCCTGAGCCACCACAGACCACCCCGCCCACCAAGCACCCCATGAAAACTGAGACTGAACAGGCAGAACAGACCAATGTGGAAGTCGGTTTGAACTTCGATTACAAACTCTTCACTGACTTTGAAACACAAGCCACGAAGTTAATCTATAAAAAAGATGATACCAACTACAATGAATTGTACTCCGATGAAGAGAACCAATACTCTACTGACCAAGCTTATAAGGACGACCTAATCGAACAGGACGACAAGAAATTGTCTTACAAAAACAAGAGCTATGACGGGAAACATATTTGCAAGAAGTGTGGCAGGCGCTTTAGACGAATATCGAACTTGAGGAAACACCTGCCGTTCCACGACAGGCCGTACAGTTGCGAAGCTTGCGGGAAGAAATACTGGTACAAGGAGGATAAAAGCAATTGCCTCAAGCACACGGAGGATGGCAAGCCCAGGGTGCTGAGCAAAGCCGAGGAGTACAGCCGGCGGCCGCACGCCTGCGACCTGTGCGGCCGCCGGTTCGACCGCCTCTCCAACATGACCAAGCACAGGCTGATACACAACAAGCCGTTCAACTGCGAGACTTGCAAGAATACTTTCTGGTACGAAGCGGACATGCTGAAATGTAAAGAGAGCCACTCGAACGCCTTCCCCCACGCATGCGCGGAGTGCGGGAAAAAATTCAAAGAGCGCTTCCTTCTCAACTCCCATCTAAAAGTCCACTCCGGGGAGAAAAACTTCGGCTGCGACTACTGCGGGCTCAAGTTCTACGACAAATACCTCTTAACTAACCACATCAGAGTCCACACGGGCGAGTTGCCTTTCAAGTGCCCGAACTGCCCCAagaggttccgtacaaaattcAGATTGACTGACCACATGTGGCAGTACGCTGAGCAGAAACCGCTGCCCTGCCCGAAGTGCCACAAAAAGTTCGCAGACGCACCAGCTCTAAAACAACACGAGAGGGTCCACATCGAAAAGAAACCCCACACCTGTCAGTACTGCGACAAAACGTTCTCCCGGAGATGGAACCTAATATTCCACATCCGGATACACACCGGTGAAACCCCGTATTCTTGCGAGATGTGTGACCGGCAGTTTCCCCACGTTTCTGATCTGCGGCGGCACAGACGTACACACACTGGCGAGAGGCCGTACACTTGTGATATTTGCAAAAAGAATTTTGGGAGGAAGTATTACCTCATTGAGCATATTCAGATTCATATGAGGGGCGGTCCGTTTGTTTGTAAGTTTTGCGAGAAAACGTACAAGTTTAAGCATTATCTGGATAAGCATCTTGAGAAGCACGACCCGGGGTACGACCACAAGCCCCACGCGTGTTGCACATGCGACCGTCGGTTCCCGAGCAACAGTAAGTTAGAGAGACATTTGAAAATTCATATGTAA
- Protein Sequence
- MPESDNHSNVSNHHMGHTSDITSHTSNMSSIEKLNGLDNWINWKFAIKMVLTLEGLWTCVLGTDTDETRDARALARICLSCQPSLYQIVRDAKTAKEAWKLLSDTFEDKGLYRRVLLLRQLHRVEYSHYSNMSEYIESVLKLVTQLSDIGKTIDDEETAEILLSGLPEEYNVLVSSLETAGLTTTLSSEVVRTRLLQEYHRRHNGNNSSDNLAYVASRRKKSTLSCTYCQKNGHAASRCFKKKRDQAKKKEEEHTMYASAYSASHSKEFIVDSGATSHMCGDPTLVEEALKKKCVISVANGQQLNSELIGKTVISSNVSLDNVLYVPNLSNNLMSVSEHEDGVPTSCIACLTGKMCETSFPQSSAGRAAHPLDLIHSDIAGPIQVPSWSGARYLLTFTDDHTRKTFGYLLKNKSDNSSVVSEVEMTSPLSDLYRTSEDVSEDDGEDGVLSGTVNPLPPSTSQGGEQITPEPTDASISRPVRSTRGIFPERFNDYHLTSLLAAAYSSFEPLTFHDAMQSPEQDDWYGAMACEFNSLIKNNAWELIDRPHNVNVLKNKWVLKKKYDATDADWANDITDRKSYTGFVVKIGNNVINWEARKQRCVALSSTEAEYLSISDSAPEQFGTVSLEAVPVNAEAVWNCSTSNEILWGGPVVNNEVVLGPEPELLKDPNYTFEVEVKIEDESCGEEDIFCDTTAEDMLPEPEPPQTTPPTKHPMKTETEQAEQTNVEVGLNFDYKLFTDFETQATKLIYKKDDTNYNELYSDEENQYSTDQAYKDDLIEQDDKKLSYKNKSYDGKHICKKCGRRFRRISNLRKHLPFHDRPYSCEACGKKYWYKEDKSNCLKHTEDGKPRVLSKAEEYSRRPHACDLCGRRFDRLSNMTKHRLIHNKPFNCETCKNTFWYEADMLKCKESHSNAFPHACAECGKKFKERFLLNSHLKVHSGEKNFGCDYCGLKFYDKYLLTNHIRVHTGELPFKCPNCPKRFRTKFRLTDHMWQYAEQKPLPCPKCHKKFADAPALKQHERVHIEKKPHTCQYCDKTFSRRWNLIFHIRIHTGETPYSCEMCDRQFPHVSDLRRHRRTHTGERPYTCDICKKNFGRKYYLIEHIQIHMRGGPFVCKFCEKTYKFKHYLDKHLEKHDPGYDHKPHACCTCDRRFPSNSKLERHLKIHM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -