Cdum024419.1
Basic Information
- Insect
- Clepsis dumicolana
- Gene Symbol
- -
- Assembly
- GCA_963691665.1
- Location
- OY829530.1:2657271-2660608[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 5.9 4.1e+02 2.5 2.1 1 23 94 117 94 117 0.92 2 20 6.6 4.6e+02 2.3 0.0 2 23 144 166 143 166 0.82 3 20 3.5 2.4e+02 3.2 0.3 3 23 190 210 188 210 0.89 4 20 0.0033 0.23 12.7 1.2 1 23 214 236 214 236 0.98 5 20 0.32 22 6.5 0.4 1 23 241 264 241 264 0.90 6 20 0.0057 0.4 12.0 0.6 3 23 272 293 271 293 0.96 7 20 0.0012 0.085 14.1 0.3 2 23 301 323 301 323 0.97 8 20 0.00047 0.033 15.4 1.7 1 23 329 351 329 351 0.94 9 20 3.2e-05 0.0022 19.1 1.0 1 23 357 379 357 379 0.97 10 20 0.033 2.3 9.6 0.3 1 14 385 398 385 399 0.90 11 20 0.066 4.5 8.6 1.7 1 21 467 487 467 490 0.89 12 20 0.13 9.1 7.7 0.0 2 23 515 537 514 537 0.93 13 20 0.027 1.9 9.8 6.2 2 23 560 581 559 581 0.97 14 20 0.13 8.7 7.7 0.2 1 23 585 607 585 607 0.96 15 20 4.2e-05 0.0029 18.7 0.5 1 23 612 635 612 635 0.96 16 20 0.035 2.5 9.5 0.7 2 23 642 664 641 664 0.94 17 20 0.00017 0.012 16.8 0.6 1 23 671 694 671 694 0.97 18 20 8.1e-05 0.0056 17.8 3.4 2 23 701 722 701 722 0.97 19 20 0.00032 0.022 15.9 2.3 1 23 728 750 728 750 0.98 20 20 0.0028 0.19 13.0 5.0 1 23 756 779 756 779 0.98
Sequence Information
- Coding Sequence
- ATGACCTGTACCTTTGGGCCAACCTCTGCAAAACCTCACCATCATCTTATAGGTGAACAGTCGACTAATGTCAAAACCGAATGGCCCAACACAGAAGACAATACATCCGATGAAGACACTGCTAGTCGAAAATTATCCAGAACAGCTAAGAGGGACGACAAAAAAGATAAAGATCAAAAATCGAAAGGTCCTACTGACGTAGAAATGCACCGAAACAACATTAGAGTGCTCCTGGAATGCACGAATGCGACGCCTATACGATGTCACGGCGGCATCGGCTATCAGTGCTGCTTCTGTCCCGAGCAGCACCCGTACCCTGCCGATCTGAAAACCCATACGATAGAAAAGCACGACAGCAAAGCAATGCAAGCTTTCATGAAGGGAAAAACTATGTCAGAGTACTTTGTCAAATTAGATATCACTGCTCTGCGTTGTAAGCTGTGCGGCACCGAAATAGAAACCATAGATCCAATGATGGCTCACCTATCAGAAACCCACGGAAAAAAGCTTTTCACGGATATCAAAAGCCATATCCTACCATTTAAATTCAACGATGAAACGTTGCGGTGTATTTTTTGCCCCAACGACTTTAACACGTTCAAAGTCTTACAAGGTCACATGAACGTCCACTTCAGGAATTTCATTTGCGAGACATGCGACAGCGGTTTCGTGACTCGCAACATGCGAAGGAATCACATGAAGACCCACGAGACTGGCTCTTTTATATGCAGTTTCTGTCCTAAAGTTTACGACACCTTGTTGAAACAACGAGCTCACGAGAAACAAGTTCATAGGCATCCGAAAATGAACCTGTGTCCTTACTGTAACGAGAGATTCCGAGATTTTACTCAGAAAGTTCGACATCTCAAAGAGGCTCATGGTGTTCAGAAAGAGTCCCCGAAATGCAAGGCTTGCGATAGAAGTTTCGAAACCATGGCAGCGCTGAGCGTTCACATCAAAAGAGATCACTTAATACAGAGGCCTCATAAATGTTCAGAAtgtgacatgtctttttatgtCAAGGCGCAGCTGAAAAATCACTTCGTTATACACTCTGGCACGCGAGAGTTTGCGTGCACGGTGTGTTTGAAGACCTTCGGCAGAAAGAAAACTTTGTCAGACCATATGAGGATCCATACAGACGATCGTCGACATAAATGCAAGCATTGTGGAATGGCTTTCGTGCAGAAAAAACTTGGAGCAGGGTGCCAAAATGTACAGACAAGTTCAGATTCGAATGTAAAGACCGCGCAGGACTCATCAACAAACACAGCGCATAAAAACCAGAAAAAGTGTTTGCGCAGAAGAGCACCTGAAATAAAACTGCACAAAGAAAACCTTCGAATCGTTTTGCGATGCTCAAGCGCTACTCCCATTCGTGCTCAGGGCAGCCTCGGCTATTGTTGCTACTACTGCAACAGCGAATACGCTGACCCGGCCGACCTCAAGAAACACAACACTGAAAGCCATACCCTAAACGACATACCATTCAAGTCTCTCCGCAACTCTTACTACTTTATGAAAATGGATATCACAAACTTGAGTTGCAAACTGTGCGAACTACCTTTCGACCAACTCGAGCCACTAATGGATCATCTAAAAGATATTCACAAAGAGCCGATACACACACACCTAAATAACCACTTAATTCCTTTTAAATTTGAAAGTGAACAACTTAAGTGCGCTGTTTGCCATCATGAATTTTATAACTTCCACATGTTACTGGATCACATGCGAAAGCATTACAGGAACTATATCTGTGATGTTTGTGATGAGGGATACTTAAATTATAACAGTTTAAGGACCCATCGTTTGGCGCATAACAAAGGGGAGTATCCTTGCCAGAAATGTGACAAGATATTTAGCAGTAGCACCAAGCTTAATGGCCACACGAGAGCTGTTCATCTAGGTATCAAGAGGAACAAATGTGGCCACTGCGGCGAGAAGTTCGCTGAACGAAGTTGGAAGCTTGATCACTTGGAAAAAGTTCATGGGATTAAGAAGCCAGACTTCAAATGtaaagtttgtaataaaatatatacgtcTCTGAAAACTCTGGACGGACATATGCGAGCAATACACCTGATGGAGAAAGAAGAAGAGTGTCCCGAATGTGGAATGAAGTTTTTTAAAAAGACTACACTGAAGCATCACATGACGACGCATACGGGACATCGCGCGTTCCATTGCGCGGTGTGTTCGAAGTCGTTTCTGAGGAGGTCTACGTTGAGAGAGCATATTAGGATACACATGGACGATCGTCGGTTCAAGTGCGAGCATTGCAGTATGGCGTTTATACAAAAGTGCAGTTGGAAGGGACACATGAGATCGAAACATGGAGAAGATGTGTGA
- Protein Sequence
- MTCTFGPTSAKPHHHLIGEQSTNVKTEWPNTEDNTSDEDTASRKLSRTAKRDDKKDKDQKSKGPTDVEMHRNNIRVLLECTNATPIRCHGGIGYQCCFCPEQHPYPADLKTHTIEKHDSKAMQAFMKGKTMSEYFVKLDITALRCKLCGTEIETIDPMMAHLSETHGKKLFTDIKSHILPFKFNDETLRCIFCPNDFNTFKVLQGHMNVHFRNFICETCDSGFVTRNMRRNHMKTHETGSFICSFCPKVYDTLLKQRAHEKQVHRHPKMNLCPYCNERFRDFTQKVRHLKEAHGVQKESPKCKACDRSFETMAALSVHIKRDHLIQRPHKCSECDMSFYVKAQLKNHFVIHSGTREFACTVCLKTFGRKKTLSDHMRIHTDDRRHKCKHCGMAFVQKKLGAGCQNVQTSSDSNVKTAQDSSTNTAHKNQKKCLRRRAPEIKLHKENLRIVLRCSSATPIRAQGSLGYCCYYCNSEYADPADLKKHNTESHTLNDIPFKSLRNSYYFMKMDITNLSCKLCELPFDQLEPLMDHLKDIHKEPIHTHLNNHLIPFKFESEQLKCAVCHHEFYNFHMLLDHMRKHYRNYICDVCDEGYLNYNSLRTHRLAHNKGEYPCQKCDKIFSSSTKLNGHTRAVHLGIKRNKCGHCGEKFAERSWKLDHLEKVHGIKKPDFKCKVCNKIYTSLKTLDGHMRAIHLMEKEEECPECGMKFFKKTTLKHHMTTHTGHRAFHCAVCSKSFLRRSTLREHIRIHMDDRRFKCEHCSMAFIQKCSWKGHMRSKHGEDV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -