Cdum024428.1
Basic Information
- Insect
- Clepsis dumicolana
- Gene Symbol
- -
- Assembly
- GCA_963691665.1
- Location
- OY829530.1:2675884-2678669[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.034 2.4 9.5 0.1 1 23 28 51 28 51 0.95 2 18 0.086 6 8.3 2.9 2 23 123 144 122 144 0.97 3 18 0.001 0.071 14.3 0.5 1 23 148 170 148 170 0.97 4 18 0.0094 0.65 11.3 0.7 1 23 177 200 177 200 0.97 5 18 0.0017 0.12 13.6 1.3 2 23 208 230 207 230 0.95 6 18 1.5e-06 0.00011 23.2 0.9 2 23 236 258 235 258 0.97 7 18 1.4 1e+02 4.4 1.0 1 23 264 287 264 287 0.89 8 18 1.2e-05 0.00084 20.4 1.6 1 23 293 316 293 316 0.98 9 18 0.015 1 10.7 0.1 1 23 406 429 406 429 0.96 10 18 0.37 25 6.3 0.2 2 23 456 478 455 478 0.95 11 18 0.06 4.2 8.7 1.8 2 23 501 522 500 522 0.94 12 18 1 72 4.9 1.7 1 23 526 548 526 548 0.94 13 18 0.025 1.7 10.0 1.5 1 23 553 576 553 576 0.91 14 18 0.035 2.4 9.5 3.0 2 23 584 606 583 606 0.96 15 18 0.0002 0.014 16.6 1.4 2 23 614 636 613 636 0.96 16 18 0.00021 0.014 16.5 5.0 1 23 642 664 642 664 0.98 17 18 4.8e-06 0.00033 21.6 0.8 1 23 670 692 670 692 0.99 18 18 3.6e-06 0.00025 22.0 3.0 1 23 698 721 698 721 0.98
Sequence Information
- Coding Sequence
- ATGCAGAAACAGTGGCACAACCTGACGACCTTGCTCAAGTACTCTAACGCCACCCCGTTTAAGGACAGGAATGACGCGGGCTACATTTGCGCGTACTGTTTCAAAGCTTACCCTGACCCGGATATCCTACGCCAACACACTCAGAATGACCACGTTAAAGAAAAACCCACCTACAAGGCTGGCTCAGGCATGAGTAGCTTCGTGGCCTTCCTAGACGTCGTCAACTTACAATGTAACCTCTGTGACGCCCCAATAGACAATCTCAAAGACCTCCCCGAGCATCTAGTCAAAGTGCACGATAAAAAATACTATCTCGACGTCACGGATTACTTCCAACCGTTCAAACTGACGAGCGAACAGCAGATAAAATGCTGCCTCTGCAGCGAAGCGTATCACAACATGAAACTGCTGATGCAACACATGAACGTCCACTATAGAAACTTCATATGCACGACTTGTGGAGCGGGCTTCGTAAACAGCTTCCGACTCAACCGACACGAGACTACGCATGGGAAAAAGAAATCGAGCTTCCCGTGCCGGCATTGCGATCAGGTCTTCGCTGCGGAGTCCAAGAAGAAGGCACACGTCAACACTGAACACAAGGGCATAGCGGGGGATAGTGTCTGTCAAATCTGTAAAGCGCGGTTCAAGAATTACTATCAAAAGACCAGGCATATGATGCAAGTGCACAACGTTGAAGGAATAAAGTGCGATATGTGTGATAAGAAGTTTAATTTGAAGTCAAATCTTATGTTGCATATGAGGAGCGTGCATTTGAAGGAACGCCCGTACGAGTGCTCAGTCTGTAGCATGGGCTTCTTCATCAAAAGGCATATGTTAGGGCATTACATGGCCACGCATACGAATGAGAGAAAGTTTAAATGTGACGTGTGCGGCAAAGCGTACGCCACGCAAAACAGCAGACGCAAGCACATGAAAAAGAATCACGGTATCACCAAAAGTATCGCGAGCCAAGCGATAATAGATAAACAAGTAAGTAGAGTAAAGCGCGGAACAGATGCGATCAAGACAGACCTTGGCTGGTCAGTCACCGTAAAGAAAGCCAGCTTGCAAACCAGTCTGAGAAGTCTGCGCGTTACGAAAATTAAACACGAAGTAGCGGAAGATAAAGAGATCAATAAACATTTACAAAACATCAGAACTATTCTACTTTATACCAATGCTACTCCGATACGGTGCCGCACCGGCCTAGGGTACGCCTGTGCGTTCTGCGATGCCAACTTCACGATCCCCGTCGACTTGAAACAACACACTCTAAAGGAACACGACGATTCACAAATCAGTAACTTCATGAAAGGTTTCTCTCTAGCCGGCTTCGCCCCTAAACTCGACATCACTACACTACACTGTGAGTTGTGTGACACAGAAATATACGAGCTAGAACAACTACTGGTGCACCTCAAGACGGAGCACGACAAAGAAGTCTACACGGAAGTAAACAATCAAATAATACCGTTCAAATTCGACAGCGAAGTCCTCAAATGCGCTATTTGCGACAAAgagtttcaatatttcaaacacatATTGGAACACATGAGTTTCCACTACAGGAATTATTTGTGCACCGTCTGCAATGCTCCCTTTATGTGCATCAAGAATCTTAAAAGCCATCTCTCCAGGCACAAGCGAGGCGAGTTTTCCTGCAGCGTGTGCAGTAAAGTCTTCGACACTAACACTAAGCGAAACGATCACGAGAAGTTCGTTCATATAGGCGACCACAAGAGAAGTAAATGCCCACACTGTTCAGAGAAATTTGCCACACATGCGAAGAAAATGGAGCACATGGCGAAAGAGCACGGAGAGAAACCTGTGGAGCTGAAGTGTAACGCTTGTTCGCTTACGTTTAAGAACAGAGATGCTCTGACCCGGCACACGAAACGCGATCATCTCATGGAGAGGCGGCATCAGTGCCAGCTTTGCGATATGAAATTTTACGGGAAATCCCAGCTAAAACATCACATGATTTCGCACACGGGTGAACGCGAGTTCCGATGCGATATCTGCCTAAAGGCGTACGCTAGGAAGAAAACTTTACGCGAACACATGAGGATACACCAGGACGACAGGAGGTTTAAATGTGAGATTTGTGGACAGGCGTTCATTCAGAAGTGTAGCTTGAAGAGTCACATGAAATCTAAGCACTGGGACGGAGTGTGTTGA
- Protein Sequence
- MQKQWHNLTTLLKYSNATPFKDRNDAGYICAYCFKAYPDPDILRQHTQNDHVKEKPTYKAGSGMSSFVAFLDVVNLQCNLCDAPIDNLKDLPEHLVKVHDKKYYLDVTDYFQPFKLTSEQQIKCCLCSEAYHNMKLLMQHMNVHYRNFICTTCGAGFVNSFRLNRHETTHGKKKSSFPCRHCDQVFAAESKKKAHVNTEHKGIAGDSVCQICKARFKNYYQKTRHMMQVHNVEGIKCDMCDKKFNLKSNLMLHMRSVHLKERPYECSVCSMGFFIKRHMLGHYMATHTNERKFKCDVCGKAYATQNSRRKHMKKNHGITKSIASQAIIDKQVSRVKRGTDAIKTDLGWSVTVKKASLQTSLRSLRVTKIKHEVAEDKEINKHLQNIRTILLYTNATPIRCRTGLGYACAFCDANFTIPVDLKQHTLKEHDDSQISNFMKGFSLAGFAPKLDITTLHCELCDTEIYELEQLLVHLKTEHDKEVYTEVNNQIIPFKFDSEVLKCAICDKEFQYFKHILEHMSFHYRNYLCTVCNAPFMCIKNLKSHLSRHKRGEFSCSVCSKVFDTNTKRNDHEKFVHIGDHKRSKCPHCSEKFATHAKKMEHMAKEHGEKPVELKCNACSLTFKNRDALTRHTKRDHLMERRHQCQLCDMKFYGKSQLKHHMISHTGEREFRCDICLKAYARKKTLREHMRIHQDDRRFKCEICGQAFIQKCSLKSHMKSKHWDGVC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01136018;
- 90% Identity
- -
- 80% Identity
- -