Cdum026001.1
Basic Information
- Insect
- Clepsis dumicolana
- Gene Symbol
- -
- Assembly
- GCA_963691665.1
- Location
- OY829532.1:6960260-6985498[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.19 13 7.1 1.9 1 23 362 385 362 385 0.93 2 21 0.014 0.99 10.7 6.3 1 23 391 413 391 413 0.96 3 21 0.00019 0.013 16.6 2.1 1 23 444 467 444 467 0.97 4 21 0.011 0.77 11.1 0.0 3 23 474 495 473 495 0.94 5 21 0.01 0.72 11.1 0.1 2 19 506 523 505 526 0.94 6 21 0.00033 0.023 15.9 1.4 2 23 564 586 563 586 0.94 7 21 0.019 1.3 10.3 0.3 2 23 609 630 608 630 0.96 8 21 1.1e-07 7.4e-06 26.8 1.8 1 23 636 658 636 658 0.99 9 21 0.00043 0.03 15.5 2.8 1 21 664 684 664 687 0.95 10 21 1.1 74 4.8 0.1 2 23 693 714 693 714 0.89 11 21 0.0011 0.075 14.2 2.8 1 23 986 1009 986 1009 0.92 12 21 8.5e-05 0.0059 17.7 1.7 1 23 1015 1037 1015 1037 0.96 13 21 8.6 6e+02 2.0 3.4 2 23 1042 1063 1041 1063 0.94 14 21 0.32 22 6.5 1.8 1 23 1068 1091 1068 1091 0.96 15 21 0.29 20 6.6 0.0 3 23 1098 1119 1097 1119 0.96 16 21 0.0011 0.08 14.2 0.1 2 19 1130 1147 1129 1150 0.94 17 21 0.00065 0.045 14.9 1.7 2 23 1188 1210 1187 1210 0.94 18 21 0.92 64 5.0 0.1 2 23 1236 1255 1235 1255 0.90 19 21 5.6e-08 3.9e-06 27.7 2.9 1 23 1261 1283 1261 1283 0.99 20 21 8.5e-05 0.0059 17.7 2.3 1 21 1289 1309 1289 1312 0.95 21 21 0.95 66 5.0 0.0 2 23 1318 1339 1317 1339 0.87
Sequence Information
- Coding Sequence
- ATGACCGACCCTTGCACCCCACAGGGTCTAAACGTGAGAATGAGCTTCTCTCACGGCCCTCCAGCACTGGCTGGGTCGCCGAATGAGAAACCGAATCCTAATTTGAGCGAGTGCTCTGACGAAGCGGCGCCTCGCGGCGAGCTGGTGGCGTGCCGCGTCTGCCTCGCGGCGGACGGGCGGCTGTACGCTATACGCGGCAGCGGCTTGGAGGACTCGCTCGCGGCTCTGACTGGGGTAGCGTTGTCAACGGAAAAGAGTTACCCGCGCCACCTGTGCGTGTTCTGCCTCGCGAAGCTGTCCAAGTTCGCCGCCTTCCGTGACAGCTGTCAGCGGAGCACCGCGCTGCTGCAGACCCTACGAGCGATGGGACGGTTAAAAATGGAAGCCTTCAATCAAATGTCACGGCAGCTGAAGGTCAACCTCACTGTGAGTAAAGTCTTCCAATGCGAAACCGTCCCGTTGTTAGAAATAACGCCTCCGTTTAAAACTGAAGAGAAACCAAATTTACATGAGGAAGGAGAATTTACAGAAGTAGAAAAATTAGAATCCGAAGACATTACAAAACAGGATGCAGGCGATGATGATGGCGAAGGGTTCATATACACTTTTGAACCACTGGTACAAGAACGAGAGATGCCTAAAATCAAATTAAGTACCAAAAATCTTCAATATACGAAAGATGAAATGGAAACTGAAAGTCCTGGAACACTTCCAGAACTTGATAACCGCGCAGAtacagtagaaaaaaaaatagaaagcaGAAACATTACAAAACAGGATGCCAGCGATGGTGATAGCGAACGGTTCATATGCACTTTTGAACCACTGGTACAACTACGAGAAATATCTAAACCCAAATGGAGTACCAACAATCCACAATGTACGAAAGATGAAATGGAAACTGAAAGTCCTGGAGCACTCTCAGAACCTGATGACAGCGCAGATGCTGTAGAAAAAAATGGCGCCGCGTTGAAAACAGAGTTCGAGTTAGCTTTCGAGAAAAAATATAACTTTGACATAAAAGTTTTGAGTAAAGAGGAACAAAAGCAAAACTTAGAGAGAAACAGAAATAGCAATTCTGCGCACAGCTGCGACGTGTGCGGGAAGGGGCACAGCGCGGAGAGCGCTCTGAGGAGACACCAGACTTACTACCACGACCCGAGTTTTCCGTTCGAATGCGACGTGTGCCGCTGCCGGTTCCGGCGCCGGCGCGAGCTGCACCGGCACCGGGAGCTCCACCGCGCCGTGCTCACGTGCCGCCAGTGCGGCTACGTGTGCTTCAACAGACCGCGCGCGAAAGAGCATTGCTCAACGCACAAAGGGACAAAGTACACTTGCCCTCATTGCGGGTTAGTGTTCGACCGTCAGTACTCGTACCACGGGCACGTCAGACTAGAGCATCCCGACAAGAACGAGGCTTGCGACGAGTGCGGGGAGACGTTTAACGGGAGGGCGGGGCTGATGATTCACAAGGCGGTGCGGCACTGGACGCACGACGAAGCAAACATAGACACCAAATGTACAGTTTGTAAAGTTAAGTTCTCGACCGCCGAAGCGCTGCTAAAGCATGAAGAGTTAAGTGCGGGCGCGGCGCATGCGCTGTGGCCGTGCGCCGCGTGCGGCGAGAGCTGCGCCAGcgacgccgcgcgcgccgcgcacgccgcggagACACACCCGCCCGGCCAGCTGCACTGCCAAGAGTGCGACAAGACGTTCTCTGACTCGGCATCGTTCGCGGTGCACACGGAGCGCAAGCACCAGAAGGCGCGCGGGCGGCACCGGGCCTTaggcgcgcggccgccgcgcggccCGAAAGGCACgctcgtttgcgaaatatgCGGCAAGGTCTCATCGTGCCGGGCGACGCTGGAGTACCACATGAACGGGCACTTGGGTCTCAAGCCGTTCCAGTGTCCGCACTGCCCCAAAGCGTTCCCTAGTAAAAACAAGCTCAGGATACATATGCGGACGCACACAGGCGAGCATCCGTACCAGTGCGAGCAGTGTCCGCTGACCTTCGCTTACCGGAGCAACTTTCAAAGACACGTGAAATGCGTGCATTTACGGATGCAGGCGACGTGCGACAAATGCGGCAAAACGATGAAAGCGGTGTCGCTCGCGTCGCACGTGCGCGCCGTGCACATGAACATACCGTACTTGCCGAATGAGAAACCGAATCCCAATTTGAGCCAGTGCCCTGACGAAGCGGGCCCTCACGGCGAGCTGGAGGCGTGCCGCGTCTGCCTCGCGGCGGACGGGCGGCTGTACGCTATACGCGGCAGCGGCTTGGAGGACTCGCTCGCGGCACTGACCGGGGTAGCGCTTTCAGCAGAAGAGAGTATGCCGCGCCACCTGTGCGTGTTCTGCCTCGCGAAGCTGTCCAAGTTCGCTGCCTTCCGGGACAGCTGTCAGCGGAGCACCGCGCTGCTACAGACCCTACGAGCAATGGGCCAGTTAAAAATGgaggtttttaataaaatgtcacGGCAACTGAAGGTCAACCTCACTGTGAGTAAAGTCTTCCAATTTGAAACCGTCCCATTGTTGGAAATAACGCCTCCGTTTAAAACTGAAGAGAATCCAAATTTACATGAAGAAGGAGTATTTACAGGAGTAGAACATTTAGAAAGCAAAGACATTACAAAGCAGGATGCAAGCGATGACGATGGCGACGGGTTCATCTACACTTTGGAACCACTTGTGCACATTGAAATACCTGAACTCAAATTGGGTACCAAAAACCCTGAATATAAGAAAGATCAAATGGAAACTGAAAGTCCTGGAACACTTCCAGAACTTGATGACCGCGCTGATACTGTAGAAAAAAATAGTGCTTCATTGAAAACAGAGTACGAGTTAGCTTTCGAGAAAAAatataactttgaaataacaattttgagtaaaaaggAACAAAAGCAGAGGTTAGAGGAGAGAAAAAGAAATAGCAATTCTCCGCACAGCTGCGACGTGTGCGGGAGACGGTACAACACAGAGAGCACTCTGATGAGACACAAGACTTACTACCACGACCCGAGTTCCCTGTTCGAGTGCGCATTGTGCCGCCGCCGATTCCGGCGCCGGGACGACTTGCGCCGGCACCGGGAGCTCCACCGCACCGTGTTAACGTGCCGCCAGTGCGGCCACGTCTGCCCCAACAAACCGCGCGCGAAAGAGCATTACTTCACTCACAAAGGCACAAAGTACGCTTGCCGTCATTGCGAGTTAGTGTTCGACAATCCGTGCCCGTACTACGGGCACATTAGGTCGCAGCATCCCGACAAAAACGAGGCTTGCGACGAGTGCGGGGAATTATTTATCGGGGAGCAGGGGCTGTTGATTCACAAGCGGGTACGGCACTGGGCGCACGACGAAGCAAATATAGACACCAAATGCACAGTTTGTAAAGTTACGTTCTCGACCGCCGAAGCGCTGCAAAGGCATGCAGAGTTAAGTGCGGGCGCGGCGCATGCGCTGTGGCCGTGTGCCGCGTGCGGCGAGAGCTGCGCCAGcgacgccgcgcgcgccgcgcacgccgcggagACACACCCGCCCGGCCAGCTGCACTGCCAAGAGTGCGACAAGACGTTCTCTGACTCGGCGTCGTTCGCGCTGCACACGGAGCGCAAGCACCAGCAGCCCCAaaaggggcgcgggcggcgccgggCCCCGGGCCCGCGGCCGCCGGGCGCCCCGACCGGCTCGCTAATTTGCGAAATGTGCGGCAAGGTCTTGTCGGCGACGCTGGAGTACCACATGAACGCGCACTTGGGTATCAAGCCGTTCCAGTGTCCGCACTGCCCCAAAGCGTTCCCTAGCCACAGCCAGCTTAAGATACACATGCGGACGCACACAGGCGAGCATCCCTACCAGTGCGAGCAGTGTCCGCAGACCTTTGCTTATTGGAGCAACTTTCAAAGACACGTAAAATGCGTACATTTACGGGTCCAGGTTAAGTGTGACAAGTGTGGCAAAATGGTGGGCGCGGCGTCGCTGGGGGCGCACGTGCGCGCCGTGCACATGAACATTAAGTACGTGCGCCGGAAACGGGACCGGGTTAAGAAGCTAGCCCGTGTTACCAAATCGTAA
- Protein Sequence
- MTDPCTPQGLNVRMSFSHGPPALAGSPNEKPNPNLSECSDEAAPRGELVACRVCLAADGRLYAIRGSGLEDSLAALTGVALSTEKSYPRHLCVFCLAKLSKFAAFRDSCQRSTALLQTLRAMGRLKMEAFNQMSRQLKVNLTVSKVFQCETVPLLEITPPFKTEEKPNLHEEGEFTEVEKLESEDITKQDAGDDDGEGFIYTFEPLVQEREMPKIKLSTKNLQYTKDEMETESPGTLPELDNRADTVEKKIESRNITKQDASDGDSERFICTFEPLVQLREISKPKWSTNNPQCTKDEMETESPGALSEPDDSADAVEKNGAALKTEFELAFEKKYNFDIKVLSKEEQKQNLERNRNSNSAHSCDVCGKGHSAESALRRHQTYYHDPSFPFECDVCRCRFRRRRELHRHRELHRAVLTCRQCGYVCFNRPRAKEHCSTHKGTKYTCPHCGLVFDRQYSYHGHVRLEHPDKNEACDECGETFNGRAGLMIHKAVRHWTHDEANIDTKCTVCKVKFSTAEALLKHEELSAGAAHALWPCAACGESCASDAARAAHAAETHPPGQLHCQECDKTFSDSASFAVHTERKHQKARGRHRALGARPPRGPKGTLVCEICGKVSSCRATLEYHMNGHLGLKPFQCPHCPKAFPSKNKLRIHMRTHTGEHPYQCEQCPLTFAYRSNFQRHVKCVHLRMQATCDKCGKTMKAVSLASHVRAVHMNIPYLPNEKPNPNLSQCPDEAGPHGELEACRVCLAADGRLYAIRGSGLEDSLAALTGVALSAEESMPRHLCVFCLAKLSKFAAFRDSCQRSTALLQTLRAMGQLKMEVFNKMSRQLKVNLTVSKVFQFETVPLLEITPPFKTEENPNLHEEGVFTGVEHLESKDITKQDASDDDGDGFIYTLEPLVHIEIPELKLGTKNPEYKKDQMETESPGTLPELDDRADTVEKNSASLKTEYELAFEKKYNFEITILSKKEQKQRLEERKRNSNSPHSCDVCGRRYNTESTLMRHKTYYHDPSSLFECALCRRRFRRRDDLRRHRELHRTVLTCRQCGHVCPNKPRAKEHYFTHKGTKYACRHCELVFDNPCPYYGHIRSQHPDKNEACDECGELFIGEQGLLIHKRVRHWAHDEANIDTKCTVCKVTFSTAEALQRHAELSAGAAHALWPCAACGESCASDAARAAHAAETHPPGQLHCQECDKTFSDSASFALHTERKHQQPQKGRGRRRAPGPRPPGAPTGSLICEMCGKVLSATLEYHMNAHLGIKPFQCPHCPKAFPSHSQLKIHMRTHTGEHPYQCEQCPQTFAYWSNFQRHVKCVHLRVQVKCDKCGKMVGAASLGAHVRAVHMNIKYVRRKRDRVKKLARVTKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -