Cdum024420.1
Basic Information
- Insect
- Clepsis dumicolana
- Gene Symbol
- -
- Assembly
- GCA_963691665.1
- Location
- OY829530.1:2661058-2664400[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.002 0.14 13.4 0.1 1 23 114 137 114 137 0.93 2 19 0.02 1.4 10.2 0.8 2 23 164 186 163 186 0.95 3 19 0.0042 0.29 12.4 0.2 2 23 209 230 208 230 0.97 4 19 0.0024 0.17 13.1 0.2 1 23 234 256 234 256 0.97 5 19 0.0025 0.17 13.1 0.5 1 19 261 279 261 284 0.89 6 19 1.8 1.2e+02 4.1 2.1 2 23 292 314 291 314 0.85 7 19 0.00019 0.013 16.6 0.5 2 23 322 344 322 344 0.96 8 19 0.00014 0.0099 17.0 0.7 3 23 352 372 350 372 0.96 9 19 3.5e-05 0.0025 18.9 0.3 1 23 378 400 378 400 0.98 10 19 0.00026 0.018 16.2 0.2 1 23 600 622 600 622 0.96 11 19 0.11 7.3 8.0 1.9 2 23 650 672 649 672 0.96 12 19 0.13 9.2 7.7 2.6 2 23 695 716 694 716 0.95 13 19 2.2e-05 0.0015 19.6 0.2 1 23 720 742 720 742 0.98 14 19 0.00063 0.044 15.0 2.2 1 23 747 770 747 770 0.97 15 19 0.94 65 5.0 1.9 2 23 778 800 777 800 0.93 16 19 0.013 0.88 10.9 6.0 2 23 808 830 807 830 0.94 17 19 3.2e-05 0.0022 19.0 0.2 2 23 838 859 837 859 0.96 18 19 2.1e-06 0.00014 22.8 0.5 1 23 865 887 865 887 0.98 19 19 8.5e-05 0.0059 17.7 0.9 1 23 893 916 893 916 0.97
Sequence Information
- Coding Sequence
- ATGTTATTTGAATGCATCAATCCAAACAGTGGACCGTTAATTGAGCAAGATTTACCTCTCTTTTCAGACATCCGACGACAAGGTTCAATTCTTAAAATTGTACCTCTCGCCTCGTCAAATAGAAAAGGTATAAGACCTACAAAAGAAGAGAGAGAAACCCACGCTTCAACATCCGGTGACGAAGCACAACTTCCGAATCCGAAAATTATACCAAAGTGGCAGAAGGTGGCTGCAGCAGGAAGAAAATTCTCACCAGAAATGGCTAAACACGTAGAAAATTTAGAAATCGTGATGCGTTGCTCAAACGCGACGCCGTTGCGCGCGCGTTACGGCCTCGGCTACGCTTGTTACTTCTGTGACGAACAGTTCCCTGATCCAGCCGACCTCAAGCAACACACTTTGGGATCTCACCCGGATTTCCGCCATACTTCATCGATTAGACTTCAGACACTTAACAATTATTCAGTCAAACTCGACATCACTTCCTTGACTTGCAACTTTTGTTTTCAAGAATTCGATCAGCTGTCTACTTTTCTGGATCATCTGCGACTCGAACACGACCAGCCAACCCACACAGACATCAAGAGCTACATGCTGCCTTTTAAATTCGACAGCAACGCCCTCAAATGTGTCATATGCGATACTGAGTTCAACTCTTTTAGAAATATAGTAGAACACATGAACATTCACTTCAGGAATTTTGTTTGTGATGTGTGCAACGCCGCGTTCGTCAACAGAGTTAGCTGGCGAAATCACAAACAAAATCACGACTTCGGAGACTTTCCGTGCACCAAATGTCCTGCAGTCTTCAGTTCTTCGGTGAAACTGAGGAATCACGATCGCTACCTCCATCTGGGGCTAGACAAGAGGAACAAGTGTGCGTATTGCGGGGAGAAATTCAGTTGTCTGATAATGAAGAACAAACACATGGTCAAAGAGCACGGCGCGGCGCCGACGGTAGCCCAGTGCAAAGCGTGTGACAAAACGTTTAACAGCTACTCCGCCCTCCGCGTACATGAGAAAGTGTATCATTTATTGAGAAAGAACGTCAATTGCACGCAGTGTGAAATGACGTTCCGTGACAGACGTGATCTAGAAAATCACATGGTTAAACATACGAAAATTCGTAATTTCATATGCTATATTTGCGATAAAGCTTATGGACGGAAAGTTACTCTAAAGGAGCATTTGCGTATTCATGCTAACGACCGCAAATTCCAGTGTCAATATTGTAATCCACACCTTGTAACTGATAGAATGGTTAAACTAGCTGATCGTGACATAACTGAAATGGACGGTAACGCTTTATTAACTACTCTGAACGAAAGCGATGAAatagacgaggaacacatattagaagaacaGATTCCTGACCGAAATCCGGAAGTGGTCGAGGCAAGACAGTTTATCAAATACGAATCAGACTCGACCTCATCTGCTCTTAGTATTCTTGAAATTGAATCAGCTTCATCTTCATCAAATACTGAATATATCGATGAATTAGATGATTTTTCGTTAAATATTGAATATCTCGATGAAACTGAAGAAGAATTCCGTTTAACGGAAAGTATACTAAAATCGAAAGAAAAAGCTGAAAGCCAAATGGCTAAAATCCAAAGAATGAAGTCAAAGACGGACAAAACTGTTAGTGAAGATACTAATTTGCGTAACATTAAATGGAATATTGAAATCAAAGACTTAGATGAAGACAATAATCAAATCCAATACCACCACGAGAATTTGCGTACCATTTTGCGATGCTCGAACGCTACTACGTTTGTATGTCGCGGGATATGGTACCTGTGCACTCTCTGTCCCATCAAATACACAAACCCCAGGGAATTAAAGGCTCACACAAAAGTTCACAACACATTGAAATCTCAACGAAAGTTGTACTCGGCGCGCAAAATGAACCGCTACGTCGTGAAGCTTGATATTACCAACTTGAGATGCAAACTGTGCTCCACAAGAATCTGCAGTTTGAAAGACTTGATGGAACATTTGCAAACTGAGCACGGTCAGCCCATACACAGGGATTTACCCAACCATATTATCCCGTTCAAATTTGACAGCGACGTGTTGCGCTGCACCGAATGCGACCGCGAATTCGCATTCTTCAAAATGCTGCAGTGCCACATGAATGACCACTACAAGAACTTTACTTGCGATGTGTGCGACACTGGGTACGTGTCATCTGGCAGCCTCATGCAGCACATGCGTCTGCACGCAGACGGCGAATACACCTGCAAGTGGTGCAAAAAACTGTTTGACAACAAGCATAAGTTGGCGGACCACATTAAGCTGGTTCATTTCGGCCTGAAGATGAGAAACAAGTGCGCTTACTGTGACATGAAGTTCCAtgtttttgaaacaaaaaacaagCATATGGAGGAGGAGCACGGAGTCAAAACGCCAGTTATTAAATGCATGGCGTGCTATAAGTGTTTTAAGTCCACGAGGCATCTGACTGCGCACATGAAGAACTTTCATTTGATAGCGGATAAGAGCCTCCAGTGCTCGCAATGTAATGAACGTTTCTCCACACCGTATATGTTAAAGGGACATATGGCGGTGCACTCTAATGACAAAGACTTCAAATGCGTCGTGTGTGACAAGGCGTTCGCGAGAAAGAAGACGCTCCGGGAACATGTCAGGATCCACGCGAACGACAGAAGGTTTAAGTGCCAGTTCTGCGGAATGGCTTTCGTGCAGAAAATCAGTCTGACTGGGCATATGAAGAATAAACATGCTGACAAAATTCAGGAATAG
- Protein Sequence
- MLFECINPNSGPLIEQDLPLFSDIRRQGSILKIVPLASSNRKGIRPTKEERETHASTSGDEAQLPNPKIIPKWQKVAAAGRKFSPEMAKHVENLEIVMRCSNATPLRARYGLGYACYFCDEQFPDPADLKQHTLGSHPDFRHTSSIRLQTLNNYSVKLDITSLTCNFCFQEFDQLSTFLDHLRLEHDQPTHTDIKSYMLPFKFDSNALKCVICDTEFNSFRNIVEHMNIHFRNFVCDVCNAAFVNRVSWRNHKQNHDFGDFPCTKCPAVFSSSVKLRNHDRYLHLGLDKRNKCAYCGEKFSCLIMKNKHMVKEHGAAPTVAQCKACDKTFNSYSALRVHEKVYHLLRKNVNCTQCEMTFRDRRDLENHMVKHTKIRNFICYICDKAYGRKVTLKEHLRIHANDRKFQCQYCNPHLVTDRMVKLADRDITEMDGNALLTTLNESDEIDEEHILEEQIPDRNPEVVEARQFIKYESDSTSSALSILEIESASSSSNTEYIDELDDFSLNIEYLDETEEEFRLTESILKSKEKAESQMAKIQRMKSKTDKTVSEDTNLRNIKWNIEIKDLDEDNNQIQYHHENLRTILRCSNATTFVCRGIWYLCTLCPIKYTNPRELKAHTKVHNTLKSQRKLYSARKMNRYVVKLDITNLRCKLCSTRICSLKDLMEHLQTEHGQPIHRDLPNHIIPFKFDSDVLRCTECDREFAFFKMLQCHMNDHYKNFTCDVCDTGYVSSGSLMQHMRLHADGEYTCKWCKKLFDNKHKLADHIKLVHFGLKMRNKCAYCDMKFHVFETKNKHMEEEHGVKTPVIKCMACYKCFKSTRHLTAHMKNFHLIADKSLQCSQCNERFSTPYMLKGHMAVHSNDKDFKCVVCDKAFARKKTLREHVRIHANDRRFKCQFCGMAFVQKISLTGHMKNKHADKIQE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -