Cdum026456.1
Basic Information
- Insect
- Clepsis dumicolana
- Gene Symbol
- -
- Assembly
- GCA_963691665.1
- Location
- OY829533.1:6842308-6845892[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0044 0.31 12.3 1.9 1 23 132 152 132 152 0.98 2 17 0.0075 0.52 11.6 0.3 1 21 171 191 171 192 0.94 3 17 0.04 2.8 9.3 0.2 1 23 217 239 217 239 0.98 4 17 0.0043 0.3 12.3 0.1 2 22 246 266 245 266 0.94 5 17 0.027 1.9 9.9 0.4 1 21 342 362 342 363 0.94 6 17 0.0018 0.13 13.5 5.2 1 23 369 391 369 391 0.98 7 17 2.8e-05 0.002 19.2 1.4 1 23 397 419 397 419 0.95 8 17 0.00063 0.044 15.0 1.4 2 23 425 447 425 447 0.93 9 17 1.6e-05 0.0011 20.0 1.2 1 23 456 478 456 478 0.98 10 17 0.0047 0.32 12.2 0.8 1 23 484 506 484 506 0.98 11 17 9.8e-06 0.00068 20.7 0.5 1 23 511 533 511 533 0.98 12 17 0.00047 0.033 15.4 1.9 1 23 539 561 539 561 0.98 13 17 1.7e-05 0.0012 19.9 5.0 1 23 567 589 567 589 0.99 14 17 0.00019 0.014 16.6 1.7 1 23 595 617 595 617 0.98 15 17 4.8e-05 0.0034 18.5 3.0 1 23 623 645 623 645 0.98 16 17 0.0025 0.17 13.1 2.7 1 21 651 671 651 673 0.94 17 17 5.3e-05 0.0037 18.4 3.2 1 23 679 701 679 701 0.98
Sequence Information
- Coding Sequence
- ATGagtggcggtggcggcgcttcGGGCGCGCCGGCGAGCGCCGAGGGCGACATGGAGTGTGTTGTGAAGGAGGAGCCGGCGTGGGAGGCCGAGGGCGCCCTGTGGGCCGCCCTGTGCGGTGGAACCGACGTCAAAAGGGCGCTCGGGCTCAGCCGCAACACTATATACGCTGAGGACGTTGGCTTCGCCCTCCCTGAGGCGAGCGAACCAGAAAATGACAGCATTTTTCCAGCTCCGACAGAAGGCGCGCAGGGCCCCGGAGACGCGGCTTTCCACACAGACCCTGAAGTCTCTGGAGCAACGCACTCTAGTCTACACAATGACAAACCAATTGTCGTCAGGCCCCCCCCAATGAATCTGGAGCGCACTGACATTGGtgaatacatatattattaccAATGCCCGATATGTCACAAGGTTGCTAAGAAGGACCTTAAGCGTCACCTTCTAACTCACACTCAGGAGGAGATTGACACCGTCATAGATGTCCGAAAACATGGCAAAGGGAAATTTGAGTGCCACTTTTGCGGAGTCAGATTCATACGCCGGCGCGGTATTACTGAACATCTTAACGTCTACGCGAAACTAGATCCTTTCCAGCAGCAGCTGCATGCGAAAATGCCGAGATGGAAAGTCATGAAGACTAAATACGAATGTGATGCTTGTGGGAAGCAGATGGGGAGGAAGGAACGTCTGGCGAGGCATCTGGAGAGGCACGAGGACGCTGAGCCTGTCACCTGCGGGCACTGCAATGAACCCTTCAAATATGAATGGGACCTCCTGGATCATATCAAGCGCAAAATctgcaatgaaaataatatagCTACACCGAATATCAGAAACATCCCAGAAGTCTTGAAGCTGAATCCCTGTTTTGTCAAACTTGAACGCCTGAACAacatttatgaaattaaaactgcGAAAACTTTTGATAAAAGTCTTGAAATTAACAGTGAAAATGATTTGAGCGGAGAAGAAAATTTATTAGATGATGCGCCTGCGCTAGGGACTGATGAAGAAACGTTCTACTGCGGGGTCTGCGAGGAGCAGTTTGACGACTCGTCCATGCTGGGTGAACACCAATGCAagcgaataaaaaaacctttttcttGTGAGATTTGCAACAAAAGGTTTATGCACCAGTGCCTTTTAGATACACACACTCGAATTCACACGGGTGAAAAACCGTTTTCTTGTAAAATATGCAACAAAAGTTTCAGGATAAAGGCACAGTTGAAAAATCATAAAGTCATACACTCAAAAAAGAAACCTACTTGCGACTTATGCGATAAACAGTTTGCTAGCACTAAATCATTAAAACGTCACAAACTATTATTGCACATGGGTGAGAAACCAAATAAACCGTATTCATGCGACATGTGTAACAAAAAGTATAAATCCTTGGGTGAACTGGAAACTCATACTCGCAGTCATACGGGCGAGAAACTTTTCACATGTGATGTTTGCAAGAAACAGTATCTACGAAAGCAGCAATTGGTCATTCATTTGCAAATCCATACTGATGAAAAATATCCTTGTCCCCTTTGCGACAAACAATCAAGCACAAGTAATGGTTTAAAAAAGCATATGAAACTTCACACGGGAGATAAACCATATTCATGTGGTGTGTGCAATAAACGGTTCCGTGCCCGTCGCAATTTCGACAACCATAAACGTGTTCACACAGGGGAGAAGCCATTCAAGTGTGAACTCTGCCCGAAACGCTTCAAACAGAAAGCTCATGTATATAAGCATCAGCGAAGGCACATGGGTGTGAAACCATTTAGTTGCTCGGTTTGTAATAAACAGTTTTCCGAAATGTATTCATTGAGGCAACATAGCAGAGTCCACACCGGGGAAAAGCCTTACTCGTGTGACATGTGTGAAAAAACCTTCAGTCATACAGTGTCTCTTAAATTACATAAACGGGTTCACACTGGAGAGAAGCCGTTCGCTTGTGGGGTCTGCAAGAAGGCGTTTTCTCGTAAGGAACGCATGAACAATCACATGCAGTGCCACTCCAAAGACTGGCCGTTTTCCTGTGATATCTGCCAGCGGAGGTTTCGGAAAAAAGACTATCTGAAGCTCCACAAGAAAGTACATAACTGTTCACTTTCGTCCAATCTTATTTAG
- Protein Sequence
- MSGGGGASGAPASAEGDMECVVKEEPAWEAEGALWAALCGGTDVKRALGLSRNTIYAEDVGFALPEASEPENDSIFPAPTEGAQGPGDAAFHTDPEVSGATHSSLHNDKPIVVRPPPMNLERTDIGEYIYYYQCPICHKVAKKDLKRHLLTHTQEEIDTVIDVRKHGKGKFECHFCGVRFIRRRGITEHLNVYAKLDPFQQQLHAKMPRWKVMKTKYECDACGKQMGRKERLARHLERHEDAEPVTCGHCNEPFKYEWDLLDHIKRKICNENNIATPNIRNIPEVLKLNPCFVKLERLNNIYEIKTAKTFDKSLEINSENDLSGEENLLDDAPALGTDEETFYCGVCEEQFDDSSMLGEHQCKRIKKPFSCEICNKRFMHQCLLDTHTRIHTGEKPFSCKICNKSFRIKAQLKNHKVIHSKKKPTCDLCDKQFASTKSLKRHKLLLHMGEKPNKPYSCDMCNKKYKSLGELETHTRSHTGEKLFTCDVCKKQYLRKQQLVIHLQIHTDEKYPCPLCDKQSSTSNGLKKHMKLHTGDKPYSCGVCNKRFRARRNFDNHKRVHTGEKPFKCELCPKRFKQKAHVYKHQRRHMGVKPFSCSVCNKQFSEMYSLRQHSRVHTGEKPYSCDMCEKTFSHTVSLKLHKRVHTGEKPFACGVCKKAFSRKERMNNHMQCHSKDWPFSCDICQRRFRKKDYLKLHKKVHNCSLSSNLI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -