Cdum007817.2
Basic Information
- Insect
- Clepsis dumicolana
- Gene Symbol
- -
- Assembly
- GCA_963691665.1
- Location
- OY829509.1:12976205-12985156[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.013 0.89 10.9 0.6 3 23 729 750 728 750 0.96 2 23 0.67 47 5.4 0.2 1 21 1131 1151 1131 1152 0.96 3 23 9.3 6.5e+02 1.9 0.3 1 22 1194 1215 1194 1217 0.82 4 23 0.0016 0.11 13.7 0.7 3 21 1228 1246 1226 1247 0.95 5 23 0.9 63 5.0 0.3 3 23 1256 1277 1254 1277 0.91 6 23 0.01 0.7 11.2 0.2 3 23 1297 1318 1295 1318 0.96 7 23 0.016 1.1 10.6 2.4 1 23 1324 1347 1324 1347 0.92 8 23 0.17 12 7.3 0.0 1 23 1373 1396 1373 1396 0.90 9 23 0.026 1.8 9.9 3.4 1 23 1401 1423 1401 1423 0.97 10 23 0.026 1.8 9.9 0.3 1 23 1429 1452 1429 1452 0.95 11 23 0.0032 0.22 12.7 1.3 1 23 1465 1487 1465 1487 0.97 12 23 0.00025 0.017 16.3 1.8 1 23 1536 1559 1536 1559 0.97 13 23 0.0094 0.65 11.3 1.8 1 23 1628 1651 1628 1651 0.96 14 23 0.0015 0.11 13.8 2.1 2 23 1676 1698 1675 1698 0.95 15 23 0.12 8.4 7.8 0.1 2 23 1704 1726 1703 1726 0.93 16 23 0.014 0.95 10.8 0.2 1 21 1767 1787 1767 1788 0.95 17 23 0.0017 0.12 13.6 0.6 1 23 1798 1820 1798 1820 0.93 18 23 0.00016 0.011 16.9 0.3 2 23 1913 1935 1913 1935 0.93 19 23 4.6e-07 3.2e-05 24.8 1.4 3 23 1942 1962 1941 1962 0.98 20 23 0.013 0.87 10.9 0.5 3 23 1985 2005 1983 2006 0.95 21 23 0.13 9 7.7 0.0 1 23 2027 2049 2027 2049 0.98 22 23 0.038 2.6 9.4 0.6 1 23 2055 2078 2055 2078 0.95 23 23 0.00043 0.03 15.5 0.7 1 23 2086 2109 2086 2109 0.96
Sequence Information
- Coding Sequence
- ATGAGTGTGAATTATGATCGTGTTTGTAGACTGTGCTTGTCATCTCGTGGCGAATTACTGCCGATATTTCCTACCACCAGTTCGGATGACTCGGAACCTCACGTCCTCGCATCAAAAATCAAGGATTGCGTGGCCATTCAGATAAACGAGAATGACGACCTGCCTACTAATGCCTGCAGAAAATGCGTGGACAATGTCAATAACTGGCATATATTTAAGAGAGTATGTGAAAGGGCACAAAACAAACTACACTCCTTGATTAAAAAAGATGGCAGCCAACTAGAAGAGTTGAATATCAAAAGTGAGCCACTGTCAGATGAGGCCTATGATGATGGAGTGGTTATTGATGGGGCCTATCAACAGGAGGCTGCTGGTACCAGCAAAGTGCAGCCTGAAGGCCCACCTATCTTGGCTTCGCTGGGACTCACACCACGGAGTGATAAGAATTATGTTGACCCTAGGATGGATTGGCACCGGGTCCATGCTATTTTGGACATGGTTCAAGATGATGATGTTATTAACTCGCTGCAGTCTGCCGAGCAGTGTGACATGCTCCAACAATCCGATCACGATTCAGACTCTGACATAGAACTGGAATGTGACACTGATGACACATATTTTGATTGTACCAATGGGTATAAGTTGAGAAAtgcaaaaataatttcaaagagACCACTCTTATCTGCTGCTGAAAATTATCCAAACATTAGGGATGCTATGGCATTAAGGAAGAGAAGTGAAAGGCAGTACAAACCTTGCCCACAGCCTAAACATGCTTGGGAGTATATATTCAGCAATGACCTACTTGAACTGATTGTTTCAGCAACTAATAAAAATATCTCTAAGCACGGCAGAAGCTTTTCCTGTGCCACCAATATTTCCGAAATAAGAACAGTTATTGGCATGTTATATTTTCATGGCATAATGAGACCAACACACCATAAACTGAAAGACTTATGGCATGTAGAATATGGGTTGACTTGCATAAAAAATGCTATGAACTTTGAAAGATTTAAGTTTCTTCTAGAGAATCTGAGtttttataatgatgatgatgaaaacctcATGCAGTTCGACATTATGAAGCAGATGCGTACGGTGTTGGAGATATTTACTTTGAATTGCAGATCAGCTCATGACATTGAGGACATTGCAGTAATTGATGAGATTATGGTACCTGTGTTTGGACCAGCCCCATTCAGATTTCAGATAGAGAAGAAGGCAGTTAAATCTGGCATTAAAATGGTGCTGCTAGTTGATTCTACTAACTTTTATATAAGCAATTTAGATGTCATTACTGATTCGTATTTTAATGCGGAAGAGATAGTAAGTAAATTAGTCCAATATTTGGTTGGAACTGGCAGAGTAATTGTCATGGACAGTTGGTTTTCATCATACACCTTGTTTGAGAAGTTAAGGAATGAATATAACCTTTTTTGTTTGGCGGCTTTGAAACGAAAAGATGAGAATATTCCCCCATACTTTGTTTCTCGACATAGGATGGCTAAACCAATTTTCATAGGATATTTTGATGATGGGTACACATTGACTTCTCAAATTACTTCTGAAACAAAGTCAGTCAATGTACTCACTAACGATCCAAAGTTTAACAGAAAAGGTCTCTCCAAAAAAACATCTGCGGCAACTGTGTATAAGCGGAACCAATCAGCAGTTGAAGTTGTAGACGTGCTGATGCATTATTACACGACCTTGCAGTATACTAACAGTTGGATGATGTCATTGTTCTTCACATTACTGAACATAGCTTCTGTAAATGCTCAAGTGATCTGGTCCACTTACAATACGCAGGATGTTGTGAAGCGGAGATTGTTTATACAAGAGCTGGCTTTGAGCCTCATGCAGACAGATGTCTCATTCCCAATGTCTCCAGTCAACCGAGCTTTATTGAAATATGGTTCTAAGACTAAAACCAGAAAACGGTGCAAACTTTGTGCTAAAACAGCTAAACGCGATAGGCGTACTACGCAATGTTGTGTGCGGTGCCGCTCACCAGGCGTCGAGAGCGAAAAAGACGAGGAAGAAGACGAAGATGATGAATTGATGGAGCCGGCCCCGCAGTACAACAAAGTGCCTAATATGCCCGAGGTGTCCATCACGGTGATGCGACCGACGGGGGAGACGCTGCACGCGCGGCAGGGCATCCAGCAGCTGGCCAGCAAGGACTGCCTCGTGTGCGGCCGCGCCTACCGCTACTCGCACAATGCGCGCCGCCACGAACTCACCGCGCACAGCTTCGACAGGTACACCAACAAGATCAATgccaaaaaaactaaaacacaCATGCAACCCAAACTCAGACTCAACCCCTTCAACCCCAAAGCCCGGCTCATGCCTAACCCCATTAGCCACAAAATGCAATTCCAAAAACCGATGCCGACTCGCATCATGCCCTCCAGAGTCGTCGCCCCACCGAAACCGATACCGATCAAAAACTCTAAACCCGTACATAATAACCTACCTTATCCTTTGCGGATAAAAGCACTCAAAGACTTGcaaattaagaaaaaagaaCCGCAAATTTTGAAGACTTTGCTCACGTCTAAACCCGAATATTTGGTTTCTGAACCCGCCATTATAAACTCGGGTCCAGAAAGTCCAGAAACTTTAATATCGGAGCCAGAGATAGCCTCATTCCAAGTTGAAACGATCTTGTCCGAACCGGGCTTTGATCAAAACCACGAAGAAGATGAGGAGGCTGATGACTcccaaaatcaaaatcaacacTACGATACTGTTGATATGGAATCGGATCATGAAATTGAGATTGCTCGTCAAAAAGAAAACGACGCCGAAATGGATGAAAATCAGGGTGAACATGACGAGGATGAAATGCAACATGACAATGAAAACATGGATAATACGGAAGGTGAAATGAGCGATAATGAGAATGGACACCAAGAAGAGGAAGATGAACTAGGTGAAAGTCAGGGAGATGTGACAATTGACGAGCATAATGACGCTCAAGGTGAAGACGGCGAAGGGGATGACGACGACAACGGAGACAGAGACGAAGATCAAGACGGCAATGAAGAAAACGACAACGACGAAGACGAAGACCTTCCTCCAGGGCTGGCGCCTGTTGTCGAGATCAACGAGGACATGCATACCAACTCGTACAATAGTGAGCAAAATGAGGAAGAGGAGGAGGAGCTCGATGAATCAGCTGCCAATGATACTATCGACGAAGACGTCAAGGAGCTCGATCCCGACAAGGTTTATGTTACAAAAACTCAGAGAGATTTCATTCAGAAGTATAGAGATATCATTGAACAGATCAATACTAAGCGGTGTCTCTGCTGCGACAGGGAACATCCTCGTAGAAAAGCTGTTATCCAACATCTCCAGAAAAATGGGCATAAAGTACCAAAGCACACATGTTACAATTGCGTTGTAACTTTTGGCCACATTGGAGCATTACTCAGCCATATGCGAGCCAATGTTTGCACAGACCTAtggaaaataatttacaacgAAAATGGAATAACCGACGATTTGGTCATGGAAGATGAGCCCAAAGATAACAAGGTGCAGTATAAGGATATTTTCAATGCAAGATCGTATGCCTGTAAACTGTGTCCGGCTAAGTTCCAACTAAAACAGTTTATTATGAAACACGTTCTGGATGTCCATGAAGACGGTCAGTCCAGAGTACCAATGGCCTGCGTACACTGCGGGTCTAGGTTCAAAGACAAATCCTTGTGGAAGAGACACATCCGGAACGGAGAATGTACAGTTTACATTGCATGCGATCTTTGCACTGAGAAATTCGTAAATATGCAAGATTTTAACGACCATGCTCTACATGTGCACGCAGGCAGTTTCGATCCCGATAACCAAAACAAATGCATCGACGGTCGTCCCACCGATTGTCCTCTGTGCGGTAAAAAGAACAGTAATTATCCCAATTTGGTGAAACATATAAAGTCAGCGCATAATGAAGACAAGCCTCACTACTGTCAACATTGCGACGCCAAGTTTGAGCAAACTCCCGATCTTAATAAACACATTTACGCTCAGCATTCAGATAAAGTGATGGGTGCACAGGCCTTGGAACCTGACATGTCAATTATCAAGGAAGAAGCCGAGGAGTATCATTATTCTTGCACAGAATGTAACGCCATATTCGAAACTGTCGACGCCTGGACGGACCATCAGGTAGCTGAACATAACCAAGTTGCGCACCACTGCGACCAGTGTGAAAAGAAGTTCCTCCGGCCCTCAGAGCTAGCGGAACACAAAAACACTCATTTGAGGGTTAAATTCTATCCTTGCAGTGTTTGCTCTAATTCATACAGTACTCCTCAAAAGCTATCTGAGCACGTGCAACAGTCCCACCCGGGCGCTTCAGCCTACGCCGCCGCCGACACTGAATTCTTTTGTGACATCTGCATTCGGTCATTCAAAAGCCGTCAAGCTTACTCTAACCACATGCGCATTCACGCCAAAATACCGACCACCAACAGGAAACCTGGCGAGTCTAAAGGTTTCGCCCCACAAATTATTGGCAAGCCTATCCGCCAGTTCCCAATGATCCAACCCGGCTTGGTCTCATTCAAACCCAACTGCAATGTTCCTAACGCTCCTTATTCATGCGATATTTGCGGTAAAGGTTTCATGCATAAGAAGAATATATGGAAACATAAGAAGGTGTTACATGCGGACCTCCTGAATGAACGAAATGACAGCGAAGACAACACCATGCAGGCGTCCACCGAAGAAGATGAATACAATGTTGACGAAAATGGCACTGCATTGTCAACGCCACAGTtcaacagttttaatttctccAACTTTGCTAACAATGTGCAACAACAACAGCAGCCGCAACAGCAATCGACACCAACCAATGACGCGTTGCCTTTCTCTTGTGAACTTTGCTTCAAGCGGTTCCCGCTGAGAACGAGTTTGTGGAAGCACAAACGCGCCAAACATGGTATCATTAACGCAAGCGCGACCGGCAATCCCGAGAATCAAGCCCAGCCATCTTCGGAAGGTGGTAGGTCTAGTTGCACGATTTGCAAGATTACATTCTCCGATAAAAAGTCGTATTATCGCCATAGGAAAAACGTGCACAAGTCCACCGCACAAATGTGTAAAATTTGCGGTAAACCACTTAACTCTACTTTGGAGTTATATGAGCACCTGAAGGCTGCCCACGCCCGAGAATTACTGGGATACAATGCTAATCAAGGCACAAGTAAAGCACAAGAAGAGGTGAAAGTGGAATACGAACCTGAACCGGAAATTAATGATCCCAGTGCAGAGTATCAAGCGCGTTACCCGTGTGATACTTGTGGTAAACAATTCGTAGGGCTTCTAGCGTTGCAGAACCATCAATGTATAAACCAAACTACTGCAGAGCCTCAAACTTTCGACTGTGAGATTTGCCACAAGAGTTACACTTCGATAGCCGCGTTGAAGAGTCACCGCGGCTGGCACTTGCGCTCCCCAGACGGCAAGGCTGCCGCGAACAACAGCGGTTTATGGATGCCTCAACACAAAGTCACAAGCAAAGTCAGTAAGCACGAAGTAGTAGATGCCTCGCAATTGGCGAGAGTGACCCACTCGACGCCCACCGCCACCTCTACCACTACTAAACGGCGACTACCACCAGAAGTCGAGGTCACCGTAGTCAACCCTAACAAAAAAATGAGATCCGATGATTCAATGGAACTTGAACAGCAAAATAGTTTAACCGGGACCCTGGAAGATCGATATTGCACTATCTGCGACAAAGAATTCACCAAACGAGCGGCGTATCAGCGCCACATGGACGAAGTGCATCAGCCGAACTCTGTGTTCTGCCCGGTGTGCGATAAGAGTTTCACTCGCAAGTCCACTTTGCTCGTCCATATGAAGAAGCATTACGGTGGCGATGGGGAAGGTAGTTCGAGTGCCGTTGGTCAATTGGCTGAGGAAGATACGTTCGGTTGCGATCAGTGCGGGACTCAGTACAACAGCGAGGCTGCGTTGCGGGCTCATAGGGCGCGGCACCACGCTGATGACTCGAATGAGTCTGAAGACGATGGGAACGTGCCAATAGCTCAACCAGGCGAGTTTACTTGCGGCCAGTGCGGAGACGGAGTTGCCACTCCAAGAGATCTCATCGCCCACCGCTCCATGCATGCGACACCGACCAAATTCTTCTGCAACATTTGCAAAGTCTATTTCGCACGCGCTTTGGACCTCTCCTCTCACACCCGCGCCAGGCATTCCGACAACGAAAAAGTGTTCTTCCCTTGTGCCATGTGTGACCGCTTCTACATGAACAAGAAGAGTTTACAGCGACACATCGAGATGTCGCACTGA
- Protein Sequence
- MSVNYDRVCRLCLSSRGELLPIFPTTSSDDSEPHVLASKIKDCVAIQINENDDLPTNACRKCVDNVNNWHIFKRVCERAQNKLHSLIKKDGSQLEELNIKSEPLSDEAYDDGVVIDGAYQQEAAGTSKVQPEGPPILASLGLTPRSDKNYVDPRMDWHRVHAILDMVQDDDVINSLQSAEQCDMLQQSDHDSDSDIELECDTDDTYFDCTNGYKLRNAKIISKRPLLSAAENYPNIRDAMALRKRSERQYKPCPQPKHAWEYIFSNDLLELIVSATNKNISKHGRSFSCATNISEIRTVIGMLYFHGIMRPTHHKLKDLWHVEYGLTCIKNAMNFERFKFLLENLSFYNDDDENLMQFDIMKQMRTVLEIFTLNCRSAHDIEDIAVIDEIMVPVFGPAPFRFQIEKKAVKSGIKMVLLVDSTNFYISNLDVITDSYFNAEEIVSKLVQYLVGTGRVIVMDSWFSSYTLFEKLRNEYNLFCLAALKRKDENIPPYFVSRHRMAKPIFIGYFDDGYTLTSQITSETKSVNVLTNDPKFNRKGLSKKTSAATVYKRNQSAVEVVDVLMHYYTTLQYTNSWMMSLFFTLLNIASVNAQVIWSTYNTQDVVKRRLFIQELALSLMQTDVSFPMSPVNRALLKYGSKTKTRKRCKLCAKTAKRDRRTTQCCVRCRSPGVESEKDEEEDEDDELMEPAPQYNKVPNMPEVSITVMRPTGETLHARQGIQQLASKDCLVCGRAYRYSHNARRHELTAHSFDRYTNKINAKKTKTHMQPKLRLNPFNPKARLMPNPISHKMQFQKPMPTRIMPSRVVAPPKPIPIKNSKPVHNNLPYPLRIKALKDLQIKKKEPQILKTLLTSKPEYLVSEPAIINSGPESPETLISEPEIASFQVETILSEPGFDQNHEEDEEADDSQNQNQHYDTVDMESDHEIEIARQKENDAEMDENQGEHDEDEMQHDNENMDNTEGEMSDNENGHQEEEDELGESQGDVTIDEHNDAQGEDGEGDDDDNGDRDEDQDGNEENDNDEDEDLPPGLAPVVEINEDMHTNSYNSEQNEEEEEELDESAANDTIDEDVKELDPDKVYVTKTQRDFIQKYRDIIEQINTKRCLCCDREHPRRKAVIQHLQKNGHKVPKHTCYNCVVTFGHIGALLSHMRANVCTDLWKIIYNENGITDDLVMEDEPKDNKVQYKDIFNARSYACKLCPAKFQLKQFIMKHVLDVHEDGQSRVPMACVHCGSRFKDKSLWKRHIRNGECTVYIACDLCTEKFVNMQDFNDHALHVHAGSFDPDNQNKCIDGRPTDCPLCGKKNSNYPNLVKHIKSAHNEDKPHYCQHCDAKFEQTPDLNKHIYAQHSDKVMGAQALEPDMSIIKEEAEEYHYSCTECNAIFETVDAWTDHQVAEHNQVAHHCDQCEKKFLRPSELAEHKNTHLRVKFYPCSVCSNSYSTPQKLSEHVQQSHPGASAYAAADTEFFCDICIRSFKSRQAYSNHMRIHAKIPTTNRKPGESKGFAPQIIGKPIRQFPMIQPGLVSFKPNCNVPNAPYSCDICGKGFMHKKNIWKHKKVLHADLLNERNDSEDNTMQASTEEDEYNVDENGTALSTPQFNSFNFSNFANNVQQQQQPQQQSTPTNDALPFSCELCFKRFPLRTSLWKHKRAKHGIINASATGNPENQAQPSSEGGRSSCTICKITFSDKKSYYRHRKNVHKSTAQMCKICGKPLNSTLELYEHLKAAHARELLGYNANQGTSKAQEEVKVEYEPEPEINDPSAEYQARYPCDTCGKQFVGLLALQNHQCINQTTAEPQTFDCEICHKSYTSIAALKSHRGWHLRSPDGKAAANNSGLWMPQHKVTSKVSKHEVVDASQLARVTHSTPTATSTTTKRRLPPEVEVTVVNPNKKMRSDDSMELEQQNSLTGTLEDRYCTICDKEFTKRAAYQRHMDEVHQPNSVFCPVCDKSFTRKSTLLVHMKKHYGGDGEGSSSAVGQLAEEDTFGCDQCGTQYNSEAALRAHRARHHADDSNESEDDGNVPIAQPGEFTCGQCGDGVATPRDLIAHRSMHATPTKFFCNICKVYFARALDLSSHTRARHSDNEKVFFPCAMCDRFYMNKKSLQRHIEMSH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -