Cdum025800.3
Basic Information
- Insect
- Clepsis dumicolana
- Gene Symbol
- -
- Assembly
- GCA_963691665.1
- Location
- OY829532.1:4246973-4258736[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 26 0.0027 0.19 13.0 0.0 1 23 204 227 204 227 0.95 2 26 0.006 0.42 11.9 2.2 1 23 234 256 234 256 0.99 3 26 0.0011 0.08 14.2 0.8 1 23 316 338 316 338 0.98 4 26 0.0046 0.32 12.3 1.4 3 22 350 369 349 373 0.90 5 26 0.0026 0.18 13.0 2.6 1 23 414 436 414 436 0.97 6 26 0.0026 0.18 13.0 2.6 1 23 454 476 454 476 0.97 7 26 0.0026 0.18 13.0 2.6 1 23 494 516 494 516 0.97 8 26 0.0026 0.18 13.0 2.6 1 23 534 556 534 556 0.97 9 26 0.0026 0.18 13.0 2.6 1 23 574 596 574 596 0.97 10 26 0.0026 0.18 13.0 2.6 1 23 614 636 614 636 0.97 11 26 0.0026 0.18 13.0 2.6 1 23 654 676 654 676 0.97 12 26 0.0026 0.18 13.0 2.6 1 23 694 716 694 716 0.97 13 26 0.0026 0.18 13.0 2.6 1 23 734 756 734 756 0.97 14 26 0.0026 0.18 13.0 2.6 1 23 774 796 774 796 0.97 15 26 0.0026 0.18 13.0 2.6 1 23 814 836 814 836 0.97 16 26 0.0026 0.18 13.0 2.6 1 23 854 876 854 876 0.97 17 26 0.0026 0.18 13.0 2.6 1 23 894 916 894 916 0.97 18 26 0.0026 0.18 13.0 2.6 1 23 934 956 934 956 0.97 19 26 0.0026 0.18 13.0 2.6 1 23 974 996 974 996 0.97 20 26 0.0026 0.18 13.0 2.6 1 23 1014 1036 1014 1036 0.97 21 26 0.0026 0.18 13.0 2.6 1 23 1054 1076 1054 1076 0.97 22 26 0.032 2.2 9.6 0.3 2 22 1085 1105 1084 1109 0.91 23 26 0.0034 0.24 12.7 0.1 1 23 1117 1140 1117 1140 0.89 24 26 0.018 1.2 10.4 7.1 1 23 1146 1169 1146 1169 0.95 25 26 0.0004 0.028 15.6 2.1 3 23 1178 1199 1176 1199 0.91 26 26 0.012 0.85 10.9 4.3 1 23 1205 1228 1205 1228 0.98
Sequence Information
- Coding Sequence
- ATGGCTACTTTAGATCATAATTTGTGCTGTGGTTGTCTGAGTCCGGACCGAAAAATGGTAGAAGTTGAAGAATTTTGGAAGAAGCagtgttttctacaaataataaACGAGATACCCATGTGCCAGCCTGAGGGAGTCCCGGTGTGGCTGTGCTGGGAGTGTGAAGCCCACATTCGGcgcttcaccaactttaaacagcAAGTGATGTATAGCTATAGGGCTCTACATGAGTTTGGAAAACAGAATCTAAACCTTGATCAACTCAACCAAACACCCAAACTCATGGTCTGTAAACTACAAAACATAAACTTAACAAACACACCGGAAGACTCCAATATCAACCAATCAGAAACCCCCGCTACCATCCAGCCGGAACACAAAcacgaaattaaaattaaggaaGAACACATAAAGTTAGAACAGGACTCCTTTTCTGACCATGACAATGATGACAATGACTTACTGATAAACTAtgtcacaaaaaaaaagaaagttcgGAAGAAGAAAAAAGTAGAAATAGAGGTTTACAAGGAGATAGAGTTGACTGAGAGGGAGGTGGAGGAAGAGAGGAAAGAGATGCAGTTGAAAGAAGAGTATGTCAATGCGATGTTTCGGTGCGAGATGTGTTTGGTGTCGTTTCCGAATGCTGATGACTTGAAGGACCATGTGGCTATCAAACATGATTTGAACGCAGCCCACTACAAATGCCCGATCTGTTTGTGCTCGTTCGCGTCCGAGATGTCATACAACTACCACCTGAACCGACACCGCCGCCGCTTcgagtgcgcggcgtgcggcgcgcgcgcccgcaGCGCACGGGCCGCACAGAAACACCACGATGCCGCGCACGGAATAGAGCCGTTGAGCTTCGAAAACCACAAGCCTGAAGATAATGGACAATCTGAGAATGTTGATAATGCAGAAACTAATGGGAAACAAGAATCGTTTCCATGCGAGTTGTGCGCGAAAACGTTTAGATGGAAGACGTCACTGAGGAAACATCTGGAGACGCACCGCATCGAGGCGGGACAGAAGCGGCGGCCGTACTGCGAGCCCTGCAAaatGTCTTTCACCACTACGTCAAATCTACAGAAACACGTCAAAACTAGTTCTAAGCATCAAATCCAGTTGAAACTAAGAAAGCTAAAGGAAACGCTGCCGGAGGACTCCACCTCGCCCGAGAAGCGGCAAGCGCACATCGAGGAGATAAAGTGCTCCGTGAACCGGGCGCGCCAGCAGTACCCGTGCGCGCACTGCGGCAAGCGGTTCCAGTGGCGCGGCAACCTGCTGCGACACCTGCACAGCCACGCCGCCAGGTGGGGTAACATAAAGTGCTCCGCGAACCGGGCGCGCCAGCAGTACCCGTGCGCGCACTGCGGCAAGCGGTTCCAGTGGCGCGGCAACCTGCTGCGACACCTGCACAGCCACGCCGCCAGGTGGGGTAACATAAAGTGCTCCGCGAACCGGGCGCGCCAGCAGTACCCGTGCGCGCACTGCGGCAAGCGGTTCCAGTGGCGCGGCAACCTGCTGCGACACCTGCACAGCCACGCCGCCAGGTGGGGTAACATAAAGTGCTCCGCGAACCGGGCGCGCCAGCAGTACCCGTGCGCGCACTGCGGCAAGCGGTTCCAGTGGCGCGGCAACCTGCTGCGACACCTGCACAGCCACGCCGCCAGGTGGGGTAACATAAAGTGCTCCGCGAACCGGGCGCGCCAGCAGTACCCGTGCGCGCACTGCGGCAAGCGGTTCCAGTGGCGCGGCAACCTGCTGCGACACCTGCACAGCCACGCCGCCAGGTGGGGTAACATAAAGTGCTCCGCGAACCGGGCGCGCCAGCAGTACCCGTGCGCGCACTGCGGCAAGCGGTTCCAGTGGCGCGGCAACCTGCTGCGACACCTGCACAGCCACGCCGCCAGGTGGGGTAACATAAAGTGCTCCGCGAACCGGGCGCGCCAGCAGTACCCGTGCGCGCACTGCGGCAAGCGGTTCCAGTGGCGCGGCAACCTGCTGCGACACCTGCACAGCCACGCCGCCAGGTGGGGTAACATAAAGTGCTCCGCGAACCGGGCGCGCCAGCAGTACCCGTGCGCGCACTGCGGCAAGCGGTTCCAGTGGCGCGGCAACCTGCTGCGACACCTGCACAGCCACGCCGCCAGGTGGGGTAACATAAAGTGCTCCGCGAACCGGGCGCGCCAGCAGTACCCGTGCGCGCACTGCGGCAAGCGGTTCCAGTGGCGCGGCAACCTGCTGCGACACCTGCACAGCCACGCCGCCAGGTGGGGTAACATAAAGTGCTCCGCGAACCGGGCGCGCCAGCAGTACCCGTGCGCGCACTGCGGCAAGCGGTTCCAGTGGCGCGGCAACCTGCTGCGACACCTGCACAGCCACGCCGCCAGGTGGGGTAACATAAAGTGCTCCGCGAACCGGGCGCGCCAGCAGTACCCGTGCGCGCACTGCGGCAAGCGGTTCCAGTGGCGCGGCAACCTGCTGCGACACCTGCACAGCCACGCCGCCAGGTGGGGTAACATAAAGTGCTCCGCGAACCGGGCGCGCCAGCAGTACCCGTGCGCGCACTGCGGCAAGCGGTTCCAGTGGCGCGGCAACCTGCTGCGACACCTGCACAGCCACGCCGCCAGGTGGGGTAACATAAAGTGCTCCGCGAACCGGGCGCGCCAGCAGTACCCGTGCGCGCACTGCGGCAAGCGGTTCCAGTGGCGCGGCAACCTGCTGCGACACCTGCACAGCCACGCCGCCAGGTGGGGTAACATAAAGTGCTCCGCGAACCGGGCGCGCCAGCAGTACCCGTGCGCGCACTGCGGCAAGCGGTTCCAGTGGCGCGGCAACCTGCTGCGACACCTGCACAGCCACGCCGCCAGGTGGGGTAACATAAAGTGCTCCGCGAACCGGGCGCGCCAGCAGTACCCGTGCGCGCACTGCGGCAAGCGGTTCCAGTGGCGCGGCAACCTGCTGCGACACCTGCACAGCCACGCCGCCAGGTGGGGTAACATAAAGTGCTCCGCGAACCGGGCGCGCCAGCAGTACCCGTGCGCGCACTGCGGCAAGCGGTTCCAGTGGCGCGGCAACCTGCTGCGACACCTGCACAGCCACGCCGCCAGGTGGGGTAACATAAAGTGCTCCGCGAACCGGGCGCGCCAGCAGTACCCGTGCGCGCACTGCGGCAAGCGGTTCCAGTGGCGCGGCAACCTGCTGCGACACCTGCACAGCCACGCCGCCAGAGCGAACGGCGAGCTGGTGTGCAAGCCGTGCAACCGCACGTTCTCGTCCATCGCCACCTACAAACAACACATGATGGTGTCGCGCGCCCACGTCTCCGAACaagCGTTGCGGCATGCCTGCGGCGAGTGCGGGCGCCGCTTCGCGACGGCGGCGCGGCTGCGCGACCACGTGGACTGGGATCACCGGCGGCACTTCACACACTCCTGCCAGCACTGCCAGAAGGTGTTCAAGAGTCACACGTCCTTGTACCTGCACAAGCAAGTTGTCCACAAGAAAGACAGCGCGGAACACCTGTGTGACCACTGCGGAAAACCATTTCCGAACCACGCGAAGCTTCGCAGCCACATCATAGCGCTCCACACGTCGGAGTCCCCCTACAAGTGCTCCACGTGCGGCGCGCGCTTCAGCTGGCACTCGTGCCTCTCGCGCCACGTGCGCCGCGTGCACAAGCGGGCACAGACGCACACACACCCTGCCGCCCACTAG
- Protein Sequence
- MATLDHNLCCGCLSPDRKMVEVEEFWKKQCFLQIINEIPMCQPEGVPVWLCWECEAHIRRFTNFKQQVMYSYRALHEFGKQNLNLDQLNQTPKLMVCKLQNINLTNTPEDSNINQSETPATIQPEHKHEIKIKEEHIKLEQDSFSDHDNDDNDLLINYVTKKKKVRKKKKVEIEVYKEIELTEREVEEERKEMQLKEEYVNAMFRCEMCLVSFPNADDLKDHVAIKHDLNAAHYKCPICLCSFASEMSYNYHLNRHRRRFECAACGARARSARAAQKHHDAAHGIEPLSFENHKPEDNGQSENVDNAETNGKQESFPCELCAKTFRWKTSLRKHLETHRIEAGQKRRPYCEPCKMSFTTTSNLQKHVKTSSKHQIQLKLRKLKETLPEDSTSPEKRQAHIEEIKCSVNRARQQYPCAHCGKRFQWRGNLLRHLHSHAARWGNIKCSANRARQQYPCAHCGKRFQWRGNLLRHLHSHAARWGNIKCSANRARQQYPCAHCGKRFQWRGNLLRHLHSHAARWGNIKCSANRARQQYPCAHCGKRFQWRGNLLRHLHSHAARWGNIKCSANRARQQYPCAHCGKRFQWRGNLLRHLHSHAARWGNIKCSANRARQQYPCAHCGKRFQWRGNLLRHLHSHAARWGNIKCSANRARQQYPCAHCGKRFQWRGNLLRHLHSHAARWGNIKCSANRARQQYPCAHCGKRFQWRGNLLRHLHSHAARWGNIKCSANRARQQYPCAHCGKRFQWRGNLLRHLHSHAARWGNIKCSANRARQQYPCAHCGKRFQWRGNLLRHLHSHAARWGNIKCSANRARQQYPCAHCGKRFQWRGNLLRHLHSHAARWGNIKCSANRARQQYPCAHCGKRFQWRGNLLRHLHSHAARWGNIKCSANRARQQYPCAHCGKRFQWRGNLLRHLHSHAARWGNIKCSANRARQQYPCAHCGKRFQWRGNLLRHLHSHAARWGNIKCSANRARQQYPCAHCGKRFQWRGNLLRHLHSHAARWGNIKCSANRARQQYPCAHCGKRFQWRGNLLRHLHSHAARWGNIKCSANRARQQYPCAHCGKRFQWRGNLLRHLHSHAARANGELVCKPCNRTFSSIATYKQHMMVSRAHVSEQALRHACGECGRRFATAARLRDHVDWDHRRHFTHSCQHCQKVFKSHTSLYLHKQVVHKKDSAEHLCDHCGKPFPNHAKLRSHIIALHTSESPYKCSTCGARFSWHSCLSRHVRRVHKRAQTHTHPAAH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -