Cdum024439.1
Basic Information
- Insect
- Clepsis dumicolana
- Gene Symbol
- -
- Assembly
- GCA_963691665.1
- Location
- OY829530.1:2752956-2762105[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 35 1.3 87 4.6 0.2 2 23 109 130 108 131 0.92 2 35 0.35 24 6.3 0.2 2 23 153 175 153 175 0.95 3 35 0.031 2.2 9.6 1.4 1 23 180 203 180 203 0.89 4 35 0.28 19 6.7 0.7 1 23 208 231 208 231 0.93 5 35 0.061 4.3 8.7 0.4 1 23 236 259 236 259 0.90 6 35 0.012 0.84 10.9 0.1 2 23 267 289 266 289 0.96 7 35 0.0015 0.11 13.8 1.2 1 23 295 317 295 317 0.97 8 35 2.2e-07 1.5e-05 25.9 2.6 1 23 323 345 323 345 0.98 9 35 0.18 12 7.3 0.0 1 23 393 416 393 416 0.90 10 35 6.2 4.3e+02 2.4 0.0 2 23 447 469 446 469 0.92 11 35 0.22 15 7.0 3.3 2 23 492 513 491 514 0.94 12 35 0.24 17 6.8 1.0 1 23 547 570 547 570 0.97 13 35 0.011 0.78 11.0 1.6 2 23 577 599 576 599 0.96 14 35 0.0027 0.19 13.0 0.2 2 23 607 629 606 629 0.94 15 35 0.0012 0.084 14.1 0.5 2 23 636 657 635 657 0.96 16 35 0.84 58 5.1 0.1 2 23 773 795 772 795 0.93 17 35 0.087 6 8.2 0.3 1 23 886 909 886 909 0.96 18 35 0.023 1.6 10.0 0.0 2 23 940 962 939 962 0.94 19 35 0.036 2.5 9.4 1.0 2 23 985 1007 985 1007 0.96 20 35 0.0054 0.38 12.0 3.3 1 23 1012 1035 1012 1035 0.96 21 35 0.38 26 6.2 0.6 1 23 1038 1061 1038 1061 0.94 22 35 0.0058 0.4 11.9 1.1 2 23 1067 1089 1066 1089 0.91 23 35 0.00085 0.059 14.6 0.6 2 23 1097 1119 1096 1119 0.97 24 35 0.0032 0.22 12.8 0.1 2 23 1126 1147 1125 1147 0.97 25 35 5.3e-06 0.00037 21.5 1.0 1 23 1153 1175 1153 1175 0.93 26 35 0.00091 0.063 14.5 7.0 1 23 1181 1204 1181 1205 0.96 27 35 1.7 1.2e+02 4.1 3.1 1 23 1272 1295 1272 1295 0.95 28 35 0.81 56 5.2 0.0 3 23 1323 1344 1321 1344 0.94 29 35 0.32 23 6.4 0.1 2 23 1367 1389 1366 1389 0.95 30 35 0.00013 0.0091 17.1 0.5 2 23 1395 1417 1394 1417 0.95 31 35 0.0099 0.68 11.2 3.3 1 23 1420 1443 1420 1443 0.95 32 35 0.17 12 7.4 0.3 1 23 1449 1472 1449 1472 0.93 33 35 0.017 1.2 10.5 0.6 2 23 1480 1502 1479 1502 0.95 34 35 5.1e-07 3.5e-05 24.7 0.3 1 23 1535 1557 1535 1557 0.98 35 35 0.046 3.2 9.1 0.5 2 23 1564 1586 1564 1586 0.93
Sequence Information
- Coding Sequence
- ATGCCAAGTAAAAGCTCATCTCGTTTCGTTGCAGGTTCGAAATACGAATCAGGACTGGACGGTACCAAACAGGAGTTAAGATGGGAACTCGAGACGAAACGAAGAAACATAGAATCTGTTTTATTGTACAGTAACGTAACGCCCTTTATTTGGCACCGCGGGAAACATATGTGTTTCATTTGCCAGACCGCCCACAAACAACCCAGTCAGATCTTAACGCACTACGAGGAACACGACTGCGTCAATTTGCCTATAGCTGTCAAGAGATACACGCAGAAGCGAGGCAACAGAGAAGCCGCCATCAAAGTCGAGATATCTAACTTATACTGCAAGCTTTGCTCAGGCAACCTGCCGAACTTATCCGAACTCATCCAACACTTGATTGGCCATCACGACGTCGATTACGACCTTTCCATCCCGAACTGCTTCCTCCCGTTTCGTTTGACAGGAGCACCAACTTGCGGCACTTGTGACATGGAGTTCGACCTGTTCGAATATCTACTCCGACACGCCAACAAAGAACATCTCAGCCACAGTTTCATGTGCGAAATATGTGGCAAGAGCTTTTTCTCTGAACGCTACCACGCCTTACACATACGCGCTTTCCACAGGGAAGGGGGCTACCGTTGCGAATACTGTGACCTCCTGTTCTCTTCGCTACCTAAGAAGTCCCTTCACATCCAAAACACGCATAAAGAGAAACAATTCAAATGCTCCATCTGTGATGAGACGCTGAGGAGTTCGTACTTCAAGAATGTACATCTAGCAGAAGTGCATGGTGTCGAAGAGAAAATGATCAAGTGTCCGAAATGTCCTAGAGTGTTCCCGCAAGACAATATCATGATACGTCACATGAAGCGAGTTCATTTGAAACTCAAAGAACACGTATGTTCAGTATGTGGGGAAAGATTCTTTGAGAGCTACCAAATGAAGATACATCTGATGAGTCACACGGGAGACAAGAATTTTAGCTGCGAGACTTGCGGGAAAACGTTTGTTAGGAAGTATTACCTCACCAAGCATATGAATTCGCATAAAATTGACGATAACGCTCCCAAGGACGGGGGGCACAAGAGAACCGCTCGCGACCGCCACAAGCTAAGCTTGATTCGGCAGAACGTCCGTGTCGTTCTAGAATACGGCAACGTCACGCCTTTCTTGTGGGCGCGCTCCACGTACCTCTGCTTCTATTGCAAAACACCAATCGCGGACCCGGACGACTTGCGGAACCATGTCGCAGAAATGCACCAATTCATTGATCTCGATGGCATACTCCGTGAACGTATCTTAAACACCTGGGACTGCGAAGTCCCTGTCAAACTAGACGTCAAAGACATCTCCTGCAAACTCTGCATCACACCTATCTCCGACCTCGCTGATCTCATTAACCATCTGAACGTGGACCACGATGCGGCTTACAACACATCTATACAAGACTGCCTGTTCGCATTCGAGCTTGGAAAAGAGAAACTCAAATGCTCTTTCTGCGATTCGCAGTTCAACTACTTCGAGTACCTTCTCCGCCACGCGAACAAACATCACATGAATCACAATTTCGTTTGCATGGTATGCTGCAAGTCTTTCCACAAGAAAATAGCATTTCAGGCACATTTTAGTGACTATCACAAAGAAGGAGGATACCCGTGTAAGCTGTGCGGTCTGAAGTGCGGTTCGGCGCCGAAACGCTACACCCACATGCAAACAGTCCATCCATCCATTGACAATCTCAAGTGTCCACAATGCGACGAGGTTTGCAAAAGCAAGTATTACAAAAGGCTACATCTAGCTACGGTGCATGGCAACGAAGAGTGCAGAAGCGAGTGTCCCCACTGCGGTAAAATGTTTTCTGAAAAAGGTATTATGGCGGCGCACGTTCGACGTGTCCATTACAAAGAGAAGAACGTGACTTGTGAGGTTTGCGGAAACAGATTCTTTGATAAAGCTCATTTGGACGCGCATATGGTGAAGCATATCGAAGAAGACTGCTATAAAAGCAACCCTCGTTTCTTTGCAGATAACGCTCCTAGCGATATGATGGGGTACACGAGGACCGAAAACGATCGTCACAAGCTGAGCTTGATACGAAACAACGTCCGCATCATCCTCCAACACGCCAACGTAATGCCTTTCATGTGGTCGTCGCGCTTCCATACGTACCTCTGCTTCTATTGCAAAGCACTGGCCATGAACACACAAGCTCTGCGCGACCACGTAGCCGAAATGCACCAGTTCGCTGACGTCGATACTGTCCTATATGAGCGCATTTCCATCCCCTATGATTGCGAAGTACCCGTCAAATTGGACGTCCGAGATATCTCCTGCAAATTTTGCGTTAAGACTCTACCCAGTATATCTGACTTTGTCAGCCATCTTAATGACGTCCACGAAGCGGGCTATGACACTTCCATAAAAGACTGCTTCTTAGCTTTTGAGCTAGTCCGTGTTAGTCAAACCAATGCGTCTGACGAGGATCGCAACCCACAGGACAAACCAGTAGCTAAACACAACCGTTTCTTTGCAGGTGCAAAAATCAGTACATTGGAGGATAAACATAAGAAACTGGAAATTAAACGTAAGCAATTGATAAAACGGCGCAATGTCGAATACGTGCTTCAGTACGGCAACGTAACGCCCTTCCTGTGGTTCAAAGGGAAGTACAGATGCTTCTACTGCACCGAACCTATGAAAAACCCAGAAATGTTACGCGAGCACACCGCCAGGGTCCATCAGTTTGCGAACCTCGAGTTAGCCGTGTTCGATAGAACCAAAGACAACAGGAACAAAGACGCTGCCATCAAAATAGATGTCACCGGCATCTCTTGCAAACTATGCCCTAAACCAGTCCCCGACTTGGAACAGCTGATCACACACCTCATCATAGCCCACGACGCCGAATACGACGTCAACGTCTCCAACTGCCTCTTACCCTTCCAATTAGACAAGGACAACCCGACCTGCCCCACCTGCAAAATGAAGTTCGTCTTCTTCGAATACCTCCTACGCCATGCCAATAAATACCACTTGGCTCACGAGTACATTTGCGATGTATGTGGCACCAGCTTCCAGGGAGAGAACCATCTAAAGATGCACCATAGGTACTACCACAGGGAATACAAGTGTGACTTCTGCGATATCCGACTGACgacgttatcgaaaaaaattATCCACGAAAAGAACGTGCACATGGCTAATCTGCTCAAATGCCCGCACTGTCCAGAGACTTTCAAGAGTCCATACTTCAAGAAACTCCATTTAGCCAACGTGCATGGTGTAGAAGAGCTAAAGATCAAGTGCCAGTACTGCACCAAGGTGTTCCCCCAAGAGAGTATCATGTCTCGGCATATGCGAAGGGTCCATCTAAGGGAGAGAAACGTAGAATGTGAAGTGTGCGGAGAAAAATTCTTCGGTCCTTACGATGTCAAGTTACATATGCTCAAACATAGCGGAGAGAAATCCTTCGTTTGCTCCGTATGCGGAAAGAAATTCTCCAAAAAGAGCAATCTGAATTCACATTCAGCGTTACACACAGGCAAGAAAGCTTActgttgcaaaatttgcaacaaAGCCTTCGCGTACCACACGAACCTGTCCATGCATATGAAGAGTATGCATCATGGCTACGTCACGATCGAGAAAACGCAAGATTTGAGCGAAATAGAAGTCGTTAAGTTGGAGTTCATAAATAACATCGGAACCAAGAGAAAGAGGGAAGATAGCGAGACGTACTTGGAACGACTGGGCACGGTCCGGAAGAATATTCTGTACGTGCTTCGCTACGGCAACGTCATGCCCTTCCAATGGAACACTAAAGGATTCAGTTGCTTCTTTTGCTCCAAACCTATGAGGGACTGTGATAGTCTTAAGGAACACACGGCATCTAAGCACGACTCCGTCGATCTGGAGTCGTTTGTAACAAAGCTCATTTCTAAAAACGTACCAGTTAAAATAGATGTCACAGGACTCGCTTGCAAGCAGTGCGCTGAGCCTCTTACCAGTATTGAGGACCTGATAGCTCATATAATCTCTATACATGGGGAACTGTACGATAACTCTGCAGGAGTCTGCGTTTTTCCCTTCATTTTGAACAAGGATCTGATGCAATGCGTGCTCTGTGGCACCAGATACGACAACTTCCCGTCAATGGTGGTCCACATGTACAAGGTACACATGGCGCACTCTTCTATGTGTCAAATTTGCGGGCTTAGCTTTACAGACAAAGCGCGTCTATCCAGACATATTAGCAAAAGCCACGTGGGACACAAATGTAAGAACTGCGGGAAATTGTTCGACGCACCCCACAAACTTGAAAGACACAAGGAACGCATCCACGGACTCGTCAAGACCCACGAATGTAACCTTTGCAGCGCGGTCTTCGAGAACGACTACCAGGTCAAGGTGCATTTAGGCAAAGTGCACAACGTCGAGAAATACCGCATTAAGTGCGAGCAATGCCCAAAGATTTGCACCACCAAAGGGGCTATGCTCTTGCATGTACAGTCCTTACATTCGGACGTACGGTACGGATGCGATCTTTGCGAATACAAGACTCCTATAAAATGGATGATTAAGCTGCACAAACGCAAGCATTTTGGCGAGAGGGATTATTCCTGCAGTATCTGTGGTAGGTTATTCGGGAGATCCAGCAATTTGAGGGCCCATATGAAGGTCCACACTGGCAGTGTTGGACGCGTCTGCCGATGGTGCCGCAAAGGGTTCACTGATCTCGAAACCCTGGACAAACATGAGAAGGAAAACCATTACTATACGAATTACGTTTAA
- Protein Sequence
- MPSKSSSRFVAGSKYESGLDGTKQELRWELETKRRNIESVLLYSNVTPFIWHRGKHMCFICQTAHKQPSQILTHYEEHDCVNLPIAVKRYTQKRGNREAAIKVEISNLYCKLCSGNLPNLSELIQHLIGHHDVDYDLSIPNCFLPFRLTGAPTCGTCDMEFDLFEYLLRHANKEHLSHSFMCEICGKSFFSERYHALHIRAFHREGGYRCEYCDLLFSSLPKKSLHIQNTHKEKQFKCSICDETLRSSYFKNVHLAEVHGVEEKMIKCPKCPRVFPQDNIMIRHMKRVHLKLKEHVCSVCGERFFESYQMKIHLMSHTGDKNFSCETCGKTFVRKYYLTKHMNSHKIDDNAPKDGGHKRTARDRHKLSLIRQNVRVVLEYGNVTPFLWARSTYLCFYCKTPIADPDDLRNHVAEMHQFIDLDGILRERILNTWDCEVPVKLDVKDISCKLCITPISDLADLINHLNVDHDAAYNTSIQDCLFAFELGKEKLKCSFCDSQFNYFEYLLRHANKHHMNHNFVCMVCCKSFHKKIAFQAHFSDYHKEGGYPCKLCGLKCGSAPKRYTHMQTVHPSIDNLKCPQCDEVCKSKYYKRLHLATVHGNEECRSECPHCGKMFSEKGIMAAHVRRVHYKEKNVTCEVCGNRFFDKAHLDAHMVKHIEEDCYKSNPRFFADNAPSDMMGYTRTENDRHKLSLIRNNVRIILQHANVMPFMWSSRFHTYLCFYCKALAMNTQALRDHVAEMHQFADVDTVLYERISIPYDCEVPVKLDVRDISCKFCVKTLPSISDFVSHLNDVHEAGYDTSIKDCFLAFELVRVSQTNASDEDRNPQDKPVAKHNRFFAGAKISTLEDKHKKLEIKRKQLIKRRNVEYVLQYGNVTPFLWFKGKYRCFYCTEPMKNPEMLREHTARVHQFANLELAVFDRTKDNRNKDAAIKIDVTGISCKLCPKPVPDLEQLITHLIIAHDAEYDVNVSNCLLPFQLDKDNPTCPTCKMKFVFFEYLLRHANKYHLAHEYICDVCGTSFQGENHLKMHHRYYHREYKCDFCDIRLTTLSKKIIHEKNVHMANLLKCPHCPETFKSPYFKKLHLANVHGVEELKIKCQYCTKVFPQESIMSRHMRRVHLRERNVECEVCGEKFFGPYDVKLHMLKHSGEKSFVCSVCGKKFSKKSNLNSHSALHTGKKAYCCKICNKAFAYHTNLSMHMKSMHHGYVTIEKTQDLSEIEVVKLEFINNIGTKRKREDSETYLERLGTVRKNILYVLRYGNVMPFQWNTKGFSCFFCSKPMRDCDSLKEHTASKHDSVDLESFVTKLISKNVPVKIDVTGLACKQCAEPLTSIEDLIAHIISIHGELYDNSAGVCVFPFILNKDLMQCVLCGTRYDNFPSMVVHMYKVHMAHSSMCQICGLSFTDKARLSRHISKSHVGHKCKNCGKLFDAPHKLERHKERIHGLVKTHECNLCSAVFENDYQVKVHLGKVHNVEKYRIKCEQCPKICTTKGAMLLHVQSLHSDVRYGCDLCEYKTPIKWMIKLHKRKHFGERDYSCSICGRLFGRSSNLRAHMKVHTGSVGRVCRWCRKGFTDLETLDKHEKENHYYTNYV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -