Cdum009760.1
Basic Information
- Insect
- Clepsis dumicolana
- Gene Symbol
- -
- Assembly
- GCA_963691665.1
- Location
- OY829511.1:13614007-13616518[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.011 0.74 11.1 0.3 1 23 95 117 95 117 0.95 2 17 0.00011 0.0077 17.3 2.2 1 23 124 146 124 146 0.98 3 17 1.2e-06 8.6e-05 23.5 4.0 1 23 152 174 152 174 0.99 4 17 0.0059 0.41 11.9 6.5 1 23 180 202 180 202 0.99 5 17 5.1e-05 0.0036 18.4 2.9 1 23 210 232 210 232 0.96 6 17 2.7e-05 0.0019 19.3 5.9 1 23 238 260 238 260 0.98 7 17 4.5e-05 0.0031 18.6 0.3 1 23 266 288 266 288 0.97 8 17 4.1e-06 0.00029 21.9 0.3 1 23 294 316 294 316 0.97 9 17 4.3e-05 0.003 18.6 1.2 1 23 322 344 322 344 0.97 10 17 4e-05 0.0028 18.7 1.4 1 23 423 445 423 445 0.98 11 17 5e-06 0.00035 21.6 5.4 1 23 451 473 451 473 0.97 12 17 0.27 19 6.7 7.4 1 23 479 501 479 501 0.98 13 17 0.00011 0.0073 17.4 2.1 1 23 507 529 507 529 0.96 14 17 0.0004 0.028 15.6 4.0 1 23 535 557 535 557 0.98 15 17 4e-05 0.0028 18.7 0.2 1 23 563 585 563 585 0.97 16 17 7.2e-07 5e-05 24.2 1.2 1 23 591 613 591 613 0.98 17 17 7.4e-06 0.00051 21.0 0.5 1 23 619 641 619 641 0.98
Sequence Information
- Coding Sequence
- ATGTCGCTGAAGAGTGTGCAAGTTAAGGTGGAGGCCGACTTCCAAGAGGAGAGTGTATGCGGCGAAAGCGTAGCAGAACAACAACCGGGCTTGTACCAAAACCAAGATATTAAGGGCGAAATTGTATTAGGATCCGAGCTAGTTGAAATCCaagTTCCAATATTACAAGAAGCCCTAAATGACGTCAAGCAAGAGCTGTTGCAGACCAGCGACAGTTGCAAACAAGAGTACGCAGATAGAAGCGTCATAAAGAAAACACACACAGCGGATAACCATAATCATTATGCCTGTCAGGTCTGTAACGAGGTGTGTAACACAAACGAAAGACTGAAACTGCATGCAGCTATTCACCAGCAGCAAAAAGAGTTGTTCACTTGTAAAATTTGTAGCAAGCAGTTTGAATTTAAGTCAAAGTTAGAATCACATGAAAAAGTTCACACCGGGGAGAAACCTTATTCCTGCCAAATCTGCAAGAAACGGTTTTCCTTTAAGAGTACTGTAAACAGGCATATGAGAACTCACACAGGAGAAAAACCTtatcaatgtgacatttgcgaTAAGCAATTTAGTTGCAAGTCTCATATGTCTCAACATAAGCTAACACATATGGATGAGAAAGAGAAGCCCCATTCTTGCAAAATCTGTGACAAACAGTATGCACACAAAAACCAATTGGTCCGTCACATGGGCATACATACTGGAGAAACACCATATCCCTGTGAGGTTTGCAATAAACAGTTTCGGCATCGGTCTCATCTAGTGAAACATAAGCAAAGACACATCAAGGAAATGCCATATGCTTGCCAGGTCTGCGACAAACGGTATAAAGAGGAGACGCAATTGACAGCCCATATGCTGTTGCATGAGGTCGAAAAAGAATATGCTTGTGAAGTGTGTGAAGAAAAATTTACACAAAAAATACAGCTGACTAAGCACATGTTGATACACACAGGCCCGACGCCCTTTTCTTGCAAAAATTGCGGGAGAAAGTTCTCGCAGAAGGGTAACGCAGTTAGGCACGAGCTCCGCCATTGTGCCAAGTCCGATAAGAAAGCTACGCAAGCTATGGCTGCACAGCAAACGCTGGCTACTCCAGCAACATCGGCTACTCTGCAAACTCTCGCCGCTTCGCGTATATTGGCCGCTCCGCAAACGTTAGTCGCTTCACAAGCGTTGTCCGCAAACATAGGTGTAAAAACTGTAAGAAACGACACTCAAAAGCTCATTTTGGAACTTAACACGCAACCAGAGCACGAAAAAGGATTGTTCACGTGTGAGATTTGTAACAAGCAGTTTGAATTCAAGTCCAAGTTAGAATCGCATGAAAAAATTCACAGCGGGGAGAAACCACATGTCTGCCACATTTGCAACAAACGGTTTTCTTTTAAGACAAATTTAAAGGAGCATATAAAAGTCCATACCGGAGCCAAACCATTTTCTTGTGACGTTTGCAATAAACAATACCGGTGTCGGTCTCACATGACACAACATAAGCTCACTCACACAGGGGTGAGGTCGCACTCTTGTAAAATGTGTGCAAAACAGTTTTCTCGGAGGAACCAATTGATTAACCACATGGTAATACACACTGGAGAAAGGCCATTTTCATGTGACATTTGCCACAAACGGTTTCCGTATCGGTCTTATGTGTTGAAACATAAACGTCTCCATGTGGTGGACATGCCATATGCTTGTCAAGTCTGTGAGAAACGGTTTAAGGAAGAGATGCAACTGACTGCTCATATGCTAATCCATGAGGACGCGAAGCAGTACCCCTGCCAAGTTTGCGATGAAAAGTTTAAACAGAAAATACAGTTGACTAAACATATGATGAAACACACAGGCGAACTGCCATACTCATGCAGTATTTGTGACAGAAAGTTCTCGCAGAAGGGAAACGCAGTTCGACACGAGCGGGTTCATGCCAAGACAGTTGATGCCTCGAAGCGAGCCTCAGCGACAGCTATTAGAATTAAGACTGTTAGAAGTGAAACACAGACGCTTTTTTTAGAACTTGACACTATTCTTAAAGTCCCacagtaa
- Protein Sequence
- MSLKSVQVKVEADFQEESVCGESVAEQQPGLYQNQDIKGEIVLGSELVEIQVPILQEALNDVKQELLQTSDSCKQEYADRSVIKKTHTADNHNHYACQVCNEVCNTNERLKLHAAIHQQQKELFTCKICSKQFEFKSKLESHEKVHTGEKPYSCQICKKRFSFKSTVNRHMRTHTGEKPYQCDICDKQFSCKSHMSQHKLTHMDEKEKPHSCKICDKQYAHKNQLVRHMGIHTGETPYPCEVCNKQFRHRSHLVKHKQRHIKEMPYACQVCDKRYKEETQLTAHMLLHEVEKEYACEVCEEKFTQKIQLTKHMLIHTGPTPFSCKNCGRKFSQKGNAVRHELRHCAKSDKKATQAMAAQQTLATPATSATLQTLAASRILAAPQTLVASQALSANIGVKTVRNDTQKLILELNTQPEHEKGLFTCEICNKQFEFKSKLESHEKIHSGEKPHVCHICNKRFSFKTNLKEHIKVHTGAKPFSCDVCNKQYRCRSHMTQHKLTHTGVRSHSCKMCAKQFSRRNQLINHMVIHTGERPFSCDICHKRFPYRSYVLKHKRLHVVDMPYACQVCEKRFKEEMQLTAHMLIHEDAKQYPCQVCDEKFKQKIQLTKHMMKHTGELPYSCSICDRKFSQKGNAVRHERVHAKTVDASKRASATAIRIKTVRSETQTLFLELDTILKVPQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -