Cdum025983.1
Basic Information
- Insect
- Clepsis dumicolana
- Gene Symbol
- -
- Assembly
- GCA_963691665.1
- Location
- OY829532.1:6807747-6810140[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 3e-05 0.0021 19.1 1.1 1 23 125 147 125 147 0.96 2 17 2.4e-05 0.0017 19.5 4.2 1 23 153 175 153 175 0.98 3 17 0.00023 0.016 16.3 1.8 1 23 181 203 181 203 0.95 4 17 5.6e-06 0.00039 21.4 2.2 1 23 210 232 210 232 0.98 5 17 0.00059 0.041 15.1 1.9 1 23 237 259 237 259 0.98 6 17 0.0037 0.26 12.6 3.1 1 23 265 287 265 287 0.98 7 17 0.00017 0.012 16.8 1.1 1 23 293 315 293 315 0.97 8 17 0.00043 0.03 15.5 4.3 1 23 321 343 321 343 0.96 9 17 3.8e-05 0.0026 18.8 2.6 2 23 352 373 351 373 0.97 10 17 1.9e-06 0.00013 22.9 0.9 1 23 378 400 378 400 0.98 11 17 1e-05 0.00072 20.6 1.8 1 23 406 428 406 428 0.97 12 17 6.4e-05 0.0045 18.1 1.0 1 23 434 456 434 456 0.97 13 17 0.0006 0.042 15.0 0.6 1 23 464 486 464 486 0.95 14 17 2e-05 0.0014 19.7 4.2 1 23 492 514 492 514 0.98 15 17 1.3e-06 9.3e-05 23.4 4.4 1 23 520 542 520 542 0.98 16 17 0.00023 0.016 16.4 0.5 1 23 547 569 547 569 0.97 17 17 0.00014 0.0099 17.0 0.1 1 23 575 597 575 597 0.98
Sequence Information
- Coding Sequence
- ATGTCTATAGAATTCGTACGCGTGAAGGAAGAACCGAAGTGGGGAGACGAATGCAACGAAAGCGAACTCGCGCCGGCCGACATCGAGAATGAGGTCAAACTAGAATTCAATGCGTCTCAGAACGTTAAGGTTGAGTTAAACGAACACCCCAAGGTCAAAGTTGAGGTGCAGGAAGAGTTAAGGAATCAAGATGATGAGTTGCCGATAATCCGTGACATCAAAGTTGAAATAGAAGTAGAAACTCATCAGCTGCAGCTACAGGGTGCAGTCTTTTCCGGTCAAGATCCATCGTCGCAGGATGACTTCCAGCAAGACCCAATGCAGGCTGGTGCAAGTGGTCTACAGCAGCCCGATCCACAAGATAACACAAGATTCCCGTGCTCTATGTGCAACAAACTATTTCGTAACAAAACCGACCTGAAGCGCCACGCGCTCCTCCACAGCGGAGTTAAACCTTTCAGCTGCGAAGTCTGCCAAAAACAGTTCTCACTCAAACATTATTTAACGAAACACATGAAAATTCACAGCGATGTCAAACCACACTGTTGCCAGCTCTGCGGTAAAGGGTACGCGGTCAAAGAAAGTTTGATCAAACATATGCTCTTACATACAGGAGAGATAAAactatatccatgcaaaatgtGTGATAAACAGTTCAAAGACAAGAACTATTTGGCCCAACATCAGCGGTTCCACACTGGACAGCAACATGAGTGTGATATTTGCAAGAAGCAGTTTCTTTTCAAAACCGGCTTAGCCAGGCATATGAGGATACATTCGGGTGACAAACCGTTTTCGTGCAAGCTTTGCTTCAAACAGTTCAAAGCTATGTCCTATTTGATAAAACATAAACGGCTTCATACGGGAGAGAAAGAATTTGCGTGCGAAGTTTGTCAAAAGAAGTTCTTTTTTAAAGATAGCGTGGACCGCCATATGAGAGTTCATACTGGGGAGAAGCCCCACCACTGCCCTATATGTCGACGCCAGTTCTCATTCAAGACTAGTTTAGTCCGTCACATGGAATTACACACTAGAGAAAAACAACCTACGGTAACATGTGACATTTGTAACAAGGAATGCACAGACGCCGCCCACTTGGAGCAACACAAACGCACACATGAAAAGAAACTGCACACGTGTCCTATTTGTAGCAAAGAGTTTTCAGTCAAAGCCAGCGTAGCGAGACATATGAGAACGCATACGGATGAAAAACCATTTACATGCCAACTCTGTGACAAAACCTTTAAAGACAAAGCGTACCTCGAACTGCATAAGAAACTTCATACCGGTGAGAAGAAACACAGCTGCAAAATATGTGGGAGACAGTTCGCTTTAAAAgcaagtttagctcgacataaCCGGATCCACACGGAAGGCGAGAGAAAGCCATTTGCATGTGACATATGCGAGAAACGGTTCAGAGTCAAAATCTACATGACGAGACACAGAGCTCTTCACACAACCGAAAGGCAATACTCATGTGAAATATGCCACAAGCAATTCTCCTTCAAAGCGCACGTACAAAGGCATATGCTTATACACACCGGAGAAACCCCGTACTCATGTAAAACATGTACCAAAAGTTTTAGAGACCGCTCTAGTTTACGAAAACATGAACGGAGGCATACGGAGAAACCGCACTCTTGTGAGGTTTGCAAAAAGCAATTCGCTGAAATTGATGCTTTAGAGAAGCATATGGCGAAACATTCTGTAGCGAAGCCCTTTTCTTGTGATGTTTGCCCGAAGCAGTTCAGGACGAGGGCGGCGGTGGCGGGGCATCAGAGGGTGCACGCCGCCGCGAGGTACTTGCCCGCCGGTAGCCAAATAGAGATAGAGATTCAAGATGTCGAGGATAGTGAGGCGTCGCTCCAGCAGGAGTCTGGCGAATCGGCGTAA
- Protein Sequence
- MSIEFVRVKEEPKWGDECNESELAPADIENEVKLEFNASQNVKVELNEHPKVKVEVQEELRNQDDELPIIRDIKVEIEVETHQLQLQGAVFSGQDPSSQDDFQQDPMQAGASGLQQPDPQDNTRFPCSMCNKLFRNKTDLKRHALLHSGVKPFSCEVCQKQFSLKHYLTKHMKIHSDVKPHCCQLCGKGYAVKESLIKHMLLHTGEIKLYPCKMCDKQFKDKNYLAQHQRFHTGQQHECDICKKQFLFKTGLARHMRIHSGDKPFSCKLCFKQFKAMSYLIKHKRLHTGEKEFACEVCQKKFFFKDSVDRHMRVHTGEKPHHCPICRRQFSFKTSLVRHMELHTREKQPTVTCDICNKECTDAAHLEQHKRTHEKKLHTCPICSKEFSVKASVARHMRTHTDEKPFTCQLCDKTFKDKAYLELHKKLHTGEKKHSCKICGRQFALKASLARHNRIHTEGERKPFACDICEKRFRVKIYMTRHRALHTTERQYSCEICHKQFSFKAHVQRHMLIHTGETPYSCKTCTKSFRDRSSLRKHERRHTEKPHSCEVCKKQFAEIDALEKHMAKHSVAKPFSCDVCPKQFRTRAAVAGHQRVHAAARYLPAGSQIEIEIQDVEDSEASLQQESGESA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -