Cdum026460.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Clepsis dumicolana
Gene Symbol
-
Assembly
GCA_963691665.1
Location
OY829533.1:6867800-6871252[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 5e-05 0.0035 18.4 3.8 1 23 94 117 94 117 0.96
2 18 3.2e-05 0.0022 19.1 0.4 1 23 137 159 137 159 0.98
3 18 3.9e-07 2.7e-05 25.1 3.8 1 23 245 267 245 267 0.99
4 18 1.7e-06 0.00012 23.1 2.6 1 23 287 309 287 309 0.99
5 18 2.5e-05 0.0017 19.4 0.5 2 23 332 353 331 353 0.97
6 18 0.017 1.2 10.5 0.5 3 20 455 472 453 474 0.92
7 18 0.00021 0.014 16.5 3.0 1 23 480 502 480 502 0.97
8 18 8e-05 0.0055 17.8 0.7 2 23 508 530 508 530 0.94
9 18 0.00065 0.045 14.9 0.1 1 23 539 561 539 561 0.98
10 18 4.9e-05 0.0034 18.5 3.8 1 23 567 589 567 589 0.99
11 18 7.1e-06 0.00049 21.1 1.3 1 23 595 617 595 617 0.96
12 18 0.00019 0.013 16.6 0.4 1 23 623 645 623 645 0.98
13 18 1.2e-05 0.00086 20.3 1.3 1 23 651 674 651 674 0.96
14 18 4.4e-06 0.0003 21.8 3.6 1 23 680 702 680 702 0.99
15 18 0.0013 0.089 14.0 1.8 1 23 708 730 708 730 0.98
16 18 5.5e-05 0.0038 18.3 5.1 1 23 736 758 736 758 0.98
17 18 0.041 2.8 9.3 7.1 1 23 766 788 766 788 0.98
18 18 0.00013 0.009 17.1 0.1 2 23 795 816 794 816 0.97

Sequence Information

Coding Sequence
ATGTCGTCGGAGGATGTAGATTTGAAGGAAGAGGCGTCAGAGCAAGACGAGGAGATCTTGCTGGACCCTAACTATAAGGAGGCGGGATTCTTAAAGGACTCGGACCCACTACCAgtttttagtggAATTGGAACAGAAAAACGCATCACAGATCCCGCCAGTGATTGCATTGAAGACTCAGATATTACGAAGATCAGCCCCCATGCCTCAGTCAGCGAAGAAAAGATCTCTTTCAAAACTTACCACGTTAAACTAAAACGCATGACAACAAAGAAGAATTACAAATGCAAAATATGCCAAAAGGCGGTTAGGAATAAAAGAAGCCTTCGTCGTCATATATGTGAGAGACACACTCAGGAAGAAATTGATGCCATCAAGACTGACAAGAAACCAAAAAGAAAGAGGAAATTTAAGTGCCATGTCTGTGGCCTGAGAGTGTCTCGGAAAGATGGCTTGGCAATACATCTAAAAATACATGAGATACAAGACCCTTCCAAGAAGCAAGTTCTCAAGAAAACGCCTGAAGGGAAGATTAAAGAGGATAATCTTGAACGTGATACTTGTTGGGAGACACAGACAGAATCACAGGTGAAAGAAAGCTCTGCTGCTCACACCGATGATTGTATTGAAGAGTCAGAAATTACGGGGATCCCTCATGCCTGTGTAGTCAGCGAGGAAAAGATCACCGTCAAGCCTTGCCTAGAACGTACCACCATTACACTAGAGAAGAAATTCAAATGTCAAATATGTCAAAAGGAATTCCGCAAAAAAGGAAACTTTCGTCGTCACATCCGGACACACACTCAAGAGGAAATCGACACCATCAAAATTGAAAAGAAATCTAACGGGAACGGAAAATTCAAATGCCATATCTGTGGCAAGAGACTGTCCCGGAAAGGCGGCTTGTTGAAACATCTCAAAACACATGAGAAAGACACTTTCACGAAGCAAGTGCTCAAGAAATCTGAAGGGGAAATCGTAAGAAATCATCTTGAATGTGATATTTGTGGGAAACAGTTAACGAGTAATAAAAGTTTGGCGAGGCATCTGAAGAAACATGATAAGCAAGAGCCGTTGTACTGCGCAGTCTACAACAAACCATTTAATATTGGGCAGGAACTCGTGGACCACATGAAGCTTCATGACGAAGATGAAGTGCAGTTTAAGCCTTGCTCTGATGAGGTTAAAGACTCTGTGCTGAAATCCGGTTTGACCAGGTCTGAACACAAAAGAGATGAAACTGCACACAAGACCTTGAAAATTGGTGGAACTTCCGCAGCAAGCGGCGATGAGGATACGAGTGATGGCGAATTACTTGACAAAGATGAGCCTGCATTAGAAACTGATGAAGAAAAGTTATTTTGCGGAGTCTGTGAGAAACAATTTGAGAACCTGTCCTCCCTCCAAGAACACGAATGTGAGCGGCCGATAAGACATTTTTCTTGTAAAATATGCAGAAAACGTTTCAGGTTAAAGAAAGAGttgaaaaatcataaaattgtaCACTGCGATAAGAAACCTACCTGCAAAATTTGTAATAAACAGTTTGCTACCAAAGGAACACTACGACAACACGAACTTATATTGCACACGGGAGAAAAACGAAAGAAACCTTATGTATGCAAATTGTGCATGAAACAGTATGCAACTCCGGGCGAACTAGAAGCACATACTCGGAGTCATACGGGAGAGAAACCTTTCACCTGTGATCATTGTAAAAAGCAGTTTGGGGGACGGAATAATTTATTAAAGCATTTACGAACTCACACGAACGAGAGACCATATACATGTGCAGTTTGTAATAAACGGTTTAGCAATAGAAGTGGATTAAAAAGGCATAGTACTATTCACACGGGAGAGAGACGATATTCATGTGAAATTTGCAATAAACGCTTCCGTCTAGGCGTTGAACTGGAACAACATAAACGTGTCCACACAGACGAGAGGCCATACGCGTGTGAAATCTGCCAGAAACAGTTCAAACAGAGTGCCCATTTATCACTTCACCAACGACTAGTTCACACAGATGAAAAACCGTACAGTTGCCAGTTTTGTGACAAACGTTTTTCAAACAATTTTTACTTAACAAACCATGTCCGGACTCACACAAAAGAAAAACCTTACCAGTGTGAGATTTGCAGCAAGAAGTTTGCAACTCTAAGTACGTGTGCAGCGCACAAGCGGATTCACACAAGCCAAAGACCGCACCGATGCCACCTGTGCAGGAGAGGGTTTGCGCGGAGCTCACACTTGGCAGCTCACATAAAATCTCATTCGAAAATCGGGGCGGTGACATTCACTTGCGATGTGTGTAAGAAAACTTTTAAGAAACGCAAGCTTTTCATTTGTCATCAGAGATACCACGCGCGGGAGAAACTGGATGTGTGTGATGTGTGTGGAAAGGGGTTTGCTTTCAACAGCGGTATGCTCGCGCACCGACGCCGCCACACTGAACAAGATTTCGCTGTTGCTTCTATCCTCATgaagtga
Protein Sequence
MSSEDVDLKEEASEQDEEILLDPNYKEAGFLKDSDPLPVFSGIGTEKRITDPASDCIEDSDITKISPHASVSEEKISFKTYHVKLKRMTTKKNYKCKICQKAVRNKRSLRRHICERHTQEEIDAIKTDKKPKRKRKFKCHVCGLRVSRKDGLAIHLKIHEIQDPSKKQVLKKTPEGKIKEDNLERDTCWETQTESQVKESSAAHTDDCIEESEITGIPHACVVSEEKITVKPCLERTTITLEKKFKCQICQKEFRKKGNFRRHIRTHTQEEIDTIKIEKKSNGNGKFKCHICGKRLSRKGGLLKHLKTHEKDTFTKQVLKKSEGEIVRNHLECDICGKQLTSNKSLARHLKKHDKQEPLYCAVYNKPFNIGQELVDHMKLHDEDEVQFKPCSDEVKDSVLKSGLTRSEHKRDETAHKTLKIGGTSAASGDEDTSDGELLDKDEPALETDEEKLFCGVCEKQFENLSSLQEHECERPIRHFSCKICRKRFRLKKELKNHKIVHCDKKPTCKICNKQFATKGTLRQHELILHTGEKRKKPYVCKLCMKQYATPGELEAHTRSHTGEKPFTCDHCKKQFGGRNNLLKHLRTHTNERPYTCAVCNKRFSNRSGLKRHSTIHTGERRYSCEICNKRFRLGVELEQHKRVHTDERPYACEICQKQFKQSAHLSLHQRLVHTDEKPYSCQFCDKRFSNNFYLTNHVRTHTKEKPYQCEICSKKFATLSTCAAHKRIHTSQRPHRCHLCRRGFARSSHLAAHIKSHSKIGAVTFTCDVCKKTFKKRKLFICHQRYHAREKLDVCDVCGKGFAFNSGMLAHRRRHTEQDFAVASILMK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-