Cdum013198.1
Basic Information
- Insect
- Clepsis dumicolana
- Gene Symbol
- -
- Assembly
- GCA_963691665.1
- Location
- OY829515.1:12624444-12630375[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.8e-08 4.2e-05 23.9 0.0 2 39 17 54 16 59 0.88 2 2 5 1.2e+04 -3.1 0.0 14 20 101 107 96 107 0.70
Sequence Information
- Coding Sequence
- ATGGAAGATGGTCAAAGTCAAACAACGAAAAAAAAGAGAATGTATTCTGAGGCGACCTTAAAGGCTGCAATTGAAAATGTCTTACAGTCAAATATGACTTTATACAGAGCATCCAAGGAATACAAAATTCCATGGACCACGTTAAAAGAGAACCTGGAGCGCATAAAAGCAAAATCCGATTGTAGCAATACGCAAGTCACAATTTCAAAAATGGGAAGACCTTATGCTTTGTCGGTAGATATAGAACTCGGTCTCATCGGAACCGGCATTGACTGCTTCGCGTCTTACTGCCTCAGCAAGCAAGGGAAGATGGGCATCAACGTCGGAGGCTACAGGTTCAGGTTCAATGGGTGCGCCAGGAACGGTAAAATACGCTGGAGATGTTCCCGTGGCCCGTGGTGCAAGGCTGCCCTCCACACTTACAGAGGGAGGATCGTCTACATACAGGGCACACACAACTGCGGCCCGAAACCACCCGCCGCTGCCACATGA
- Protein Sequence
- MEDGQSQTTKKKRMYSEATLKAAIENVLQSNMTLYRASKEYKIPWTTLKENLERIKAKSDCSNTQVTISKMGRPYALSVDIELGLIGTGIDCFASYCLSKQGKMGINVGGYRFRFNGCARNGKIRWRCSRGPWCKAALHTYRGRIVYIQGTHNCGPKPPAAAT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -