Cdum013182.1
Basic Information
- Insect
- Clepsis dumicolana
- Gene Symbol
- -
- Assembly
- GCA_963691665.1
- Location
- OY829515.1:12424835-12449176[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.8e-10 2e-06 28.1 0.0 2 37 302 338 301 345 0.87 2 2 1.2e-06 0.0027 18.1 0.0 2 35 367 400 366 408 0.89
Sequence Information
- Coding Sequence
- ATGTTCCTAAACACTTTTGCCATAGGACAGGAATCCGTTTACGAAGCTCTCCAAGAATATGATAGAGAAGGATTGAACTACGAAGTCATTCCGGCAAGAAAATCAAAGCTTATCCTGTATGAAGGTTTCACTTACTCTCACAAGGGTCCGAAGACTGGCAGGAACTACTATTGCTCGAAGATGACCCTTGAAAGCGTCGATATCTCAGTTGATGATGAAATAAGTGACGAAGGATCCGAAGGCGATTCCGACATTGAATATGGTGGACCTGAGTTTGAATTCGATGAGGACACAAGCGCAGAAGCGTCAGACGAAGACTGGAGTATGGAACGCAGAACAAATCATGTTAAACCTTTTTCAAGTGCAACTGGGCCGCAGATCCTTGGTTTACAGAAACCCATAGAATATTTTGACAGTGTGACGCAGCAGTTCCTCAAGCTTCTTTTAATGAACATAAATAAGCAAGCACTTCAATTGTTTTTGAGCAAAAATCCTGTTTTTGTGAGACTACACGAGTTCAAACCTTTTACGATGGACGAGTTGCGCGTCTTTTTGGGATTATTCCTGCATATGGAAAAACCTGAATTCTTGACGCTCAACAGCGGACGGAAGGTCATCATGTACAAAGGGTACACCTTCTGTTACCACCAACGCGGCACGAACCGTCTCCAATGTTCCCGAAGAATCAGCACCAAGTGTGAAGCCAGGCTCAAACTTGACAATGACGGCATCATTACCTTCGCTGACACGTGTCATAACCACCCGCCTCCTATCTACATGAAAACGCCTAACGGAACGTATGTCAAGGTCCCCAATCGCATGGAACTGCTCCCTCCTGGAACACCGGTTGACCATTTCCTTAGACGCATCGCTCAGGgtaAGTCCACCAGACGTAAATATTGCCCCGAAGATATGCAATCAGCAATAGACGAAGTTTTAAAAAATGGAGCGTCCATCAGATCTGCAGCTATTAAGTATGGTGTTCCTCGCATAACTTTGAACGACAAAGTAACAGGGAGAACTCCGCGCGTCTGTCGCTTCGGCCCAAAGACGTTTTTATCAGAAGACATAGAGAATGATTTAGTAGAGTGGATCAAAGACGAAGCCATGGAAATGGCAATTGAGGAAGTTTTAAAAGGTGCCCCCGTCAAAACTACAGCAAGGAAGTATGGTGTCCCGCGCGTTACTCTGTACAACAAAGCGACAGGAAAAACGCCACGCCTCTGCCGCATGGGCCCAAAGACGTATTTACCTGAAGACGTAGAAAATGAATTGGtacagtttattaaaaatgtagcCACAGTTGGTTTTCCGATGCACAGAAGGAAGTTGCAGGACATTGTGAAAACAATAGTGGAAGAGAAGAATTTAAAGACGCCCTTCAGAGACAATCGTCCGGaACTGTCTTACATGTTTGTTGAATTTGCAAACCGTAAGAGGCCTGCTATGCTGCTGCAAGAGCATGTCTTCGTTCAGACCACCAGCGACAATCGTTACTGGCACTGCCATAAGAAGACCGCCACGGCCTGCCCTGCTAGACTTAGGTTTAACATAGCAGGGTCGTTAGTTTTTCATGTCCTGAGACACAATCACATTCCGTCAGATTACGTGAAATCGAAATGTGGAAAGTACTACTCCTGGCTAAAAACTGAAGGGAAACGTCGAGGGCACTCTTGCTTCAAGATCACCAGGCTCAAAGGCGGTCGCCAGGTGCTTCTGTTCCAAGATAACACATTCTCCAACAGCTGGAAGTCCAGAGCCTGGTACTGCTCCAAGAGGAAATCCATGCACTGCCCCGCCAAAGTCATATTTGACAAGTTTAATAACATATCGAAGTTTGATCTTAATCATACGCattag
- Protein Sequence
- MFLNTFAIGQESVYEALQEYDREGLNYEVIPARKSKLILYEGFTYSHKGPKTGRNYYCSKMTLESVDISVDDEISDEGSEGDSDIEYGGPEFEFDEDTSAEASDEDWSMERRTNHVKPFSSATGPQILGLQKPIEYFDSVTQQFLKLLLMNINKQALQLFLSKNPVFVRLHEFKPFTMDELRVFLGLFLHMEKPEFLTLNSGRKVIMYKGYTFCYHQRGTNRLQCSRRISTKCEARLKLDNDGIITFADTCHNHPPPIYMKTPNGTYVKVPNRMELLPPGTPVDHFLRRIAQGKSTRRKYCPEDMQSAIDEVLKNGASIRSAAIKYGVPRITLNDKVTGRTPRVCRFGPKTFLSEDIENDLVEWIKDEAMEMAIEEVLKGAPVKTTARKYGVPRVTLYNKATGKTPRLCRMGPKTYLPEDVENELVQFIKNVATVGFPMHRRKLQDIVKTIVEEKNLKTPFRDNRPELSYMFVEFANRKRPAMLLQEHVFVQTTSDNRYWHCHKKTATACPARLRFNIAGSLVFHVLRHNHIPSDYVKSKCGKYYSWLKTEGKRRGHSCFKITRLKGGRQVLLFQDNTFSNSWKSRAWYCSKRKSMHCPAKVIFDKFNNISKFDLNHTH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -