Basic Information

Insect: Clanis bilineata
Gene Symbol: ush
Assembly: GCA_036417725.1
Location: CM071140.1:2126334-2128939[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.0081 0.55 11.3 0.1 1 20 96 115 96 117 0.94

2 9 0.00047 0.032 15.2 1.0 1 23 155 177 155 177 0.98

3 9 0.077 5.2 8.3 0.3 3 20 208 225 207 227 0.93

4 9 0.0046 0.31 12.1 3.8 2 21 467 486 466 487 0.95

5 9 0.015 1 10.5 0.2 3 20 516 533 514 535 0.90

6 9 1.4 93 4.3 0.0 2 23 563 584 562 584 0.94

7 9 0.0096 0.65 11.1 1.3 1 23 590 612 590 612 0.99

8 9 0.29 20 6.4 1.1 1 23 651 674 651 674 0.96

9 9 0.21 14 6.9 0.7 2 20 706 724 706 726 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.0081	0.55	11.3	0.1	1	20	96	115	96	117	0.94
2	9	0.00047	0.032	15.2	1.0	1	23	155	177	155	177	0.98
3	9	0.077	5.2	8.3	0.3	3	20	208	225	207	227	0.93
4	9	0.0046	0.31	12.1	3.8	2	21	467	486	466	487	0.95
5	9	0.015	1	10.5	0.2	3	20	516	533	514	535	0.90
6	9	1.4	93	4.3	0.0	2	23	563	584	562	584	0.94
7	9	0.0096	0.65	11.1	1.3	1	23	590	612	590	612	0.99
8	9	0.29	20	6.4	1.1	1	23	651	674	651	674	0.96
9	9	0.21	14	6.9	0.7	2	20	706	724	706	726	0.92

Sequence Information

Coding Sequence: ATGCCGGGAGAACCTCGCACGCCGAGCTCGGGAGGCGAACGGCCCGCGTCCAGTGGTGGGGCGTCGCCCGCATCAGGAGGCTCGCCGGCCGCGTCGCCGCCGCGCCTGCGCCTCAACACCAGCCTCGCCACGGACCCCGCGCTGGCGCCACAGGCGACGCCGCTCAAGTGTGAGCCGCGCTCGCCGTCGcccccaccgccgccgccggcaCCGCAGCAGAGAGACTACATCGCTTTAGCGGCGACCGCTTTCCCTGGGATTTTTGCTGCAAACGCCGCGCCGAGCTACGTATGCCAACCGTGTGGCATTAGATACTCCTCTCTGAGTACACTACAAGCACATCAAGAGCATTACTGCTCTAACAGAAAGCCTAAGCCGCCTGAGACCACTGAGACTGCGACAGATGCAACAGTGGATGAGTCGAGTGGCGACGCAAAAACCCCGCGTCCCGCCAGCAAGCAATACGCTTGCACTTTTTGTTCGTACAGCGCTGACAAGAAAGTGAGTTTGAACCGACACATGCGCATGCACTCGTCATCACCCGTGAGCAGCGGCACGCCCGCGCCCACGCCGACGTCCAATGGCGAGGTGACCGAGAGCCCACCTGCACCAGACCGGTACTGCGCCGATTGCGACATCCGTTTCAGCTCAATAAAAACCTACCGGGCTCATAAAGCCCACTACTGCAGCACCCGACAAGTGGTGAAGCAAGCTCTGCAAGCCATAAGGTCGGGCTCTGCGACCTCAGGATCAGCTCCTCCTTCTCCCGGAGCGACACCTCCAGCACAAAACCAGTACGCTTTAGCGTTACCCACGAATCCGATCCTGATCGTCCCCTATTCTTTACTGCGAAGTGCCAGCACTCTGCCGGGAACGACCTTGCCTGACCCGGATACACCCTGCTTCTTGTTGCCCAATGGCACATTCCAACCACTGAGTCAAGCGTTACCAAATATCAATTCAGATGGCAAAGTGCCAGAAGTTCTGAAGTCTGCAAACAAACCGCGAGAAACACCAAGAGATGGTGCTACTCCTTTAGATCTTAGCATGCGTCGTTCACCAGAATCGGTGACCATCGACGACCATGAAAAAGAAAACAGGATACGATCGGCTACACCGGAACAAATTGTTTGTGCTCCGTCGCTGCCAGGGTCCCCTGGAACGCCGTCTCCCTCCCGACGTTCTTCTTCTCCAAGCGGTGAGAGTTCACCGAAGCGACGTCGACGCAACTCTAGAGGCCCTACACCAAAACCGCCGAGCGTACCTTCACCACCAGAAGAAAAATTCGCTCCAGTAGTACCCCCTGCGATTATACCTCCAGCATTAGCATTACGGCTCGCTTCTGAGCTTCCTGTAACAGCAGCATCTCCTCAAGTGTTGGTCAAACAAGGCGTATCCAAATGCAAAGAGTGCAATATCGTGTTCTGTAGATACGAGAACTATCGCGTACATAAGAGGCATTACTGCTCCGCTGGTAGTGGCGAGGAGAGGGCGAGTCCTGCCCCTCCCGAGCCGGGACCCCCACCGCAGTACCGGCAGTTGATCTGCCTCGCATGCGGCATTCACTTTAACTCACTGGATAACTTAACGACACATCAGTCGTATTACTGCACTAAAAGGGAGACTCGATCGCCACGGAACGTTCCAGAAGCTCCGCGACCGTCTTCAGGGTCAGAGGGCGGGTGGAAGTGTCCCTGCTGCGACGTAGTGTCGCCGACGGCTGCTGCGGCTCAGCGACACATGGAAGCACACGCTGGTGTCAAAGCATTTCGGTGCACGATCTGCCGGTACAGAGGAAACACTCTTCGCGGCATGCGGACGCACATACGCATGCATTTCAATAATAAGAAACCCGCTGATTTGCAGGAAGAAACCTACATAGCGTGCGTGCTCGAGGATGAGGGTCGCGAGACGACGTCCCCGAGCCCGGCGGCGGCGGGGGAGCGCGTGCACCGCTGCACCAGCTGCGCCTACACCTCCACCTACCGCGGGAACGTGGTGCGGCACGCGCGCCTCGTGCACGCCAGCGACGAGCCCGACGACGGACACACCTCCCCCGTCCCCACCGTCGACATCAAGAAGGAGCCCGACGTCGAACTCGAAGAAACACCCAACTACTGCAAATCCTGTGACATCTCCTTCAAATACGTCAACACGTACAAGGCCCACAAGCAGTTCTACTGCACGGCCAACAACCAGGACGCCGCCGCTAACAACAACGTCCCGGCTCCACCTCCGAGAGTCAGCGACACCCCTGTGCTATGA
Protein Sequence: MPGEPRTPSSGGERPASSGGASPASGGSPAASPPRLRLNTSLATDPALAPQATPLKCEPRSPSPPPPPPAPQQRDYIALAATAFPGIFAANAAPSYVCQPCGIRYSSLSTLQAHQEHYCSNRKPKPPETTETATDATVDESSGDAKTPRPASKQYACTFCSYSADKKVSLNRHMRMHSSSPVSSGTPAPTPTSNGEVTESPPAPDRYCADCDIRFSSIKTYRAHKAHYCSTRQVVKQALQAIRSGSATSGSAPPSPGATPPAQNQYALALPTNPILIVPYSLLRSASTLPGTTLPDPDTPCFLLPNGTFQPLSQALPNINSDGKVPEVLKSANKPRETPRDGATPLDLSMRRSPESVTIDDHEKENRIRSATPEQIVCAPSLPGSPGTPSPSRRSSSPSGESSPKRRRRNSRGPTPKPPSVPSPPEEKFAPVVPPAIIPPALALRLASELPVTAASPQVLVKQGVSKCKECNIVFCRYENYRVHKRHYCSAGSGEERASPAPPEPGPPPQYRQLICLACGIHFNSLDNLTTHQSYYCTKRETRSPRNVPEAPRPSSGSEGGWKCPCCDVVSPTAAAAQRHMEAHAGVKAFRCTICRYRGNTLRGMRTHIRMHFNNKKPADLQEETYIACVLEDEGRETTSPSPAAAGERVHRCTSCAYTSTYRGNVVRHARLVHASDEPDDGHTSPVPTVDIKKEPDVELEETPNYCKSCDISFKYVNTYKAHKQFYCTANNQDAAANNNVPAPPPRVSDTPVL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00050390;
90% Identity: iTF_00859956;
80% Identity: -