Cbil001281.2
Basic Information
- Insect
- Clanis bilineata
- Gene Symbol
- Zfpm1
- Assembly
- GCA_036417725.1
- Location
- CM071138.1:4358167-4377835[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 1.4 94 4.3 0.2 1 23 308 330 308 330 0.93 2 11 0.0048 0.32 12.1 0.0 1 23 370 392 370 392 0.98 3 11 1.9e-05 0.0013 19.6 0.4 1 23 399 421 399 421 0.98 4 11 0.24 16 6.7 2.2 1 23 425 448 425 448 0.83 5 11 2.2 1.5e+02 3.6 1.5 1 23 459 484 459 484 0.95 6 11 0.96 66 4.8 0.1 2 23 489 511 488 511 0.92 7 11 8.3e-06 0.00057 20.7 1.5 1 23 521 543 521 543 0.98 8 11 7.1e-05 0.0049 17.8 2.1 2 23 553 574 553 574 0.95 9 11 2.4e-05 0.0017 19.3 1.2 1 23 585 608 585 608 0.97 10 11 0.012 0.79 10.8 1.7 3 23 649 669 648 669 0.96 11 11 0.11 7.8 7.7 0.3 1 23 675 698 675 698 0.93
Sequence Information
- Coding Sequence
- ATGTGCGGATcgttatttttctcaaataataaaaAGTTTTATCAATGTAACCAAGTAGCGGCGAACAGCAACgagatttcttcttcttctacacATTTTAGTCCTGATAACACATGTTTCTGTTGTTTAACGGGCGATGTGCCGCTAATAAAAATGAGCAGTTGTTCTCACAACGGCTACTTGATgtgttgtttttataataaaataaCCCTGAAAACGATGCTGTGTAATTATTGTCATAACATATTGAAAAAGATTGAATGGTTCAAGAAACAAGTGGAGGAATGTATTTTATACAGAGAACAGTTAATAACAACGAATACAATACGAAACCTGCAAAAATCCGAAGTtgtgacgacatcaatcataccGGAAGACGAAAAGCCTGACATAGCTAATATATTCATCCCCGAAGCCACAATAAATGATACGAACGTGGACATTAAGGAAGAATACTTCTCCGATGAGAGCACGAGATCGGCGTTTGAGCAGGATATGGAAGAGCTGATACCGGCATGGCAGGTGGATgacaagaaagaaaagaaagatgaCAAGAAAACGGTCGATATGTTAAAAACGCCGGATGTTACGGATAAACCGAATGTGATGGAATTTCGGaagGCCCATCAAAAGCCAAATTTCAAGATGCAAGAGGCAATTGATCATTCATACGCGGCGGCTGAATGTGTACCCACTAAGCCTGCTTCGAAGAAGAAAACAAAAACGGCATTTGATATTAAGCCCAGCACCTCAGAAACGTTAAACACTTACGAGAAGTTGACAGTTGTGAGGTCAGGCACATACACCAATCCTCAGCCTGGGAGATTATTGAAACCAAGATCAATACAAAGGCCACGAAGGAGTTCAAATAGGATTCAACACTTAAAGATACTGCCAAAAGTCGATACACAAAAGCCAACCTTTGAATGTTCACTGTGTTCGGCGAAATTTGATGTTAAATGGGTATATGACAACCATGTGAAGGAACATAAGAACGTGAAATATGCGAGAAGAGATTTGTACGGTAAAATACAAATGATATATTTAAACAAGGAAGAGATGGAGTtagagagagaaagaaagagagcTGCGTTTGCAGATTGTGCTTATAAATGTGAAAACTGTCTAATAGGCTTCGAGTTAGAGGAGAATCTTATGAGTCATATGGCAATACATGACCAGAGCAAAAGTAAATATGTATGTGAGGTATGTAAACGAGTGTACGCGACCAGGTCAAGTCTGAAGACTCATGAAGATACGCATTGGAAACGGTATAAATGCATGGTGTGCGGTGAAAAGTTCACACAAGACGTGAAATGTATACTCCATTACAACAAGGAGCATGGCTCAGATGGGAACACCATAGAAGATTATTACTCGTGCCGGCATTTGGACTGCGACTTTATCGCTAAtAATATTTATGCATACAAGGCTCATAAGAGAAAGATGCATAGTAAGAGAATTCCTTGCGATGTCTGTAACAATATATTCATGAGTTTCGGCGCCATGAGACAACATAAGACGGTGGTACACGACAAAACGAATGAACCGAAGAAAACACACAAATGTAAAATATGTAACAAATTATATAAGAGCAAGGGTGGTTTGGTGGCCCACATACGGACGCACAATGACCATATAAATAAGGACTTGCCTTACTGTAAACAGTGCGACAAGATATTTTACAGTAAGAGCAGTCTTCAATCACATTACACGAACCATTCCAGGCATATCACGGAAGAGAACAAGAAATACACATGTGACTACTGCCGCCAGAAGTTTGCGTTTAAATCGACGTTGAGAGCTCATATCGAGAAGATACATATGGCGTTAACATTCCAGTGCGCAGTTTGTAAGAAAGTGTCGAGCTGCAGCCGGGCTCATGAGGACCACATGAAGCGCAACCATAGCGATGCACCGAAACCGCCGCCAGAGAAGAAACTTTGTCAAATATGCGGCAAGGGATTCAAGcaCGTAACATCCCTGGAATTCCACATGTTCAGTCACACGGGCGAGAGACCATTCAAGTGCGCGCAATGTCCCGCCACTTTCGCGTATAAAGCGGCTCGTTATACGCATAACAGACTTGTCCACAAGGTGCCTAAAAAGAATAACAACTTATAA
- Protein Sequence
- MCGSLFFSNNKKFYQCNQVAANSNEISSSSTHFSPDNTCFCCLTGDVPLIKMSSCSHNGYLMCCFYNKITLKTMLCNYCHNILKKIEWFKKQVEECILYREQLITTNTIRNLQKSEVVTTSIIPEDEKPDIANIFIPEATINDTNVDIKEEYFSDESTRSAFEQDMEELIPAWQVDDKKEKKDDKKTVDMLKTPDVTDKPNVMEFRKAHQKPNFKMQEAIDHSYAAAECVPTKPASKKKTKTAFDIKPSTSETLNTYEKLTVVRSGTYTNPQPGRLLKPRSIQRPRRSSNRIQHLKILPKVDTQKPTFECSLCSAKFDVKWVYDNHVKEHKNVKYARRDLYGKIQMIYLNKEEMELERERKRAAFADCAYKCENCLIGFELEENLMSHMAIHDQSKSKYVCEVCKRVYATRSSLKTHEDTHWKRYKCMVCGEKFTQDVKCILHYNKEHGSDGNTIEDYYSCRHLDCDFIANNIYAYKAHKRKMHSKRIPCDVCNNIFMSFGAMRQHKTVVHDKTNEPKKTHKCKICNKLYKSKGGLVAHIRTHNDHINKDLPYCKQCDKIFYSKSSLQSHYTNHSRHITEENKKYTCDYCRQKFAFKSTLRAHIEKIHMALTFQCAVCKKVSSCSRAHEDHMKRNHSDAPKPPPEKKLCQICGKGFKHVTSLEFHMFSHTGERPFKCAQCPATFAYKAARYTHNRLVHKVPKKNNNL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -