Cbil004783.1
Basic Information
- Insect
- Clanis bilineata
- Gene Symbol
- Sall1
- Assembly
- GCA_036417725.1
- Location
- CM071142.1:2437048-2455948[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.65 44 5.3 0.1 2 23 7 28 6 28 0.97 2 13 0.0014 0.093 13.8 0.1 1 23 975 998 975 998 0.94 3 13 7.6e-06 0.00052 20.8 1.5 2 23 1094 1115 1093 1115 0.97 4 13 4.5e-05 0.0031 18.4 1.1 1 23 1121 1143 1121 1143 0.99 5 13 0.0087 0.6 11.2 2.5 2 23 1150 1171 1149 1172 0.95 6 13 0.45 31 5.8 2.5 5 23 1185 1203 1184 1203 0.96 7 13 0.022 1.5 9.9 1.1 3 23 1210 1231 1209 1231 0.96 8 13 0.039 2.6 9.2 0.2 2 23 1261 1281 1260 1281 0.96 9 13 0.00016 0.011 16.7 0.5 1 20 1287 1306 1287 1309 0.92 10 13 0.00086 0.059 14.4 1.3 1 23 1317 1339 1317 1339 0.98 11 13 0.0062 0.42 11.7 7.2 1 23 1345 1367 1345 1367 0.98 12 13 7.2e-06 0.00049 20.9 1.3 1 23 1373 1397 1373 1397 0.98 13 13 0.0012 0.082 13.9 4.2 1 23 1403 1425 1403 1426 0.95
Sequence Information
- Coding Sequence
- ATGGACCACACGCAGGTACAGTGCCCCGTGTGCACCCTGTACCTTCGCAATGGGATGACCTTGGAGTCTCACCTGGACACTCATCCTAAGGATCAGGTTATCAAAGCTCTCTGCTGCCTCACCACAAAAGGCAGCAACTATGGCAGTAGAACCTCCACCCCATTGCACTCTGAACGTTCCTTCAGGAGCAGGTCTCGTACACCTGCTGCTGATGATAGATGGAATGGCTCACATCAAAGTAGTGAACATGATAGATACTGGCGGAGACCTTCAAGCAGGACTCCTAAAACCACTCCTGTGACTAGTGTGTCAGGTAGTGGTACCCCTGAAATAAGGATGGCAGAAATGCAATATGAAGGTGGTTCAATGACCTCTGGGCAGCATTCCCTACCTCCATATCCTATGAAAAGTGATAAAACTCCAACATATCAGAATACTCCAATGTCAGACTTTGATCCGTCATACAGTTTCTATCAGGACCAGCAAGAGGATAGAGAGATAAAGTTCTCCCGCAGTGCAGAATACTCAGCAATGGACAATAGCAATGTGTTCACATACAACATGCCAGCGGTGACTACAGGAGTGAGGTTCCAAGCAAATAACAGTTTGTTACCAACAATATCAAAGAAACCTGATTTTGTTAAGATTTTACCAAAACCAAACAATATTGTAGTGAAAACGAATGTTGGTGGTGTTCAGTACATCACTTCTGGTGTGAAGCCCTTGCATGTGATGATGCCTCCAAATCCTGCGTTTGTACCCAAGAACATACACAATAACATGATAATGCCAGGTAGTACCCATCCATCTGTGAATATTGAGAAAGGACCATCTCAACTGAACACCAACCCTTTCAACATAATGCCTGGTAGCTTAGCACCAGCCATGTCAACAGTTATGACACAGAACTCTCAGATAATCTACAGAGAAATGGTGCACAATGTAGATGGTAAACCATTTATATCCAGTGTGCCTGCAGTAATGACAACTGGCAGTGCTGCCACGTTGGCTCAAGCTGGTCCATTGTACCAGAATGTGATGGTTGTTGACCAGTTTGGTTCATGTATGTATACCACCCCACAGCAACTCCTTCCAAAGTCTTGCACCACCTCTATTTATTCAGAAAGTGGGTCTCTTGTAACTGGAAGTCACATGAACAAATCGCCTGTACCTAATGATCCAAAGACGCTTGTAATTGAAGTTGGTCCTATAATATCATCACAAAGTGCTTCTCCATGTACTACGTCTACTAGTACTGCCATATCCACACCAGAAACTATTATAAAAACGGATAAAGATAGTATCAGTGTGAAGTCGGATGTAAGGAGTGATGCGTCCAGTTCAACTAAGGGTCTGAAAATTTTAAGCAATATTAAAGTTGAAGTGCCTGTTCAACATAACAAAAATATGGTGAACACTATAATGGACCTCACAGAGTCTAATGATCAGGAGTATCCTGAAGAGGAAATGAATATTCCAAAATCTGAGAAAAACTTGCCGAAAACAAATCATAAATCAGATAATTGTACACCTCGGCCTTCCAGTTCTAGCAATGATAGTGTAGTTTCACATTCATTCTCTGTGATCAAAAATGTTGGAAACCCACCGTCATACAAGAGCTCATCTAGCAAAACATTAGATAGCAAAATAGACACTGAGTATGGTGACAGTTGCCCAGTACCTGATCTGATATGCAATGAGAAACCCTCAATATCACCTTGCAGTGAATTATCTGAGAATGGGGAAAACTCAACAGACCTTACATTGCTGTCCCCAAAACTAAGTCATGATcgagaaattaaaaataatttgacagTAGAGAATAAGGCTCAGGTGGCTGTCAAACCATATAGGTTAAATGCACTAAGACTGAACAACCTTTATGTtaaaaagaacaaaaaaatTTTGCAAATAAAAAATGCCAAACAGTTTGGGACAAGTAGTACCAGCAGTATGGATATGGAGCCGATACCATCCTCAAGCAGGTTACCAGAAGATTATTCAATAAAGAAACACATGGAGAGAGATGAAGTTATAGAGCATTCGACTTTGCAAACTGTATCTGTGGAGGAGATAAAGGATAATGACGAGAACGGGTTCGATGCGGACACGGAGGAACATTCTATGGATATGGAACCGCCGCCGATGCCCACAATCAACAGCACCACTGAATTCACCACCACAGTTGATATGGTACATGTCAAAGAAGAAATTAGTACGAGTAACGAAAGCGCATTCAGTAACGCGACCCCAGACCGTGTCCTCACACCGATGGAGACCCTAAGACCTGTAAACGTGATCACTTACGGCAACCTGCCCGCCGACAATTTTGACGAGGAATCTAGCCACAGAGAGCTAATGAACATCGAAGCCGCGTCCAAAAACAAACAGTTTGTAAGCATAATGAACGAAAGTTACTTCGGCGAGAATCTCTACGCCGATTACTTCGCGCAAGATCGACAGGAACCGTTCGAAAATCGACAGCCGCCAAAGGAACCTCTGTATGGCATGTGGGGGGAATCATCGCAGAAAGATAATGAATTCGTACTGCCGAGTTTTATTCACGACAACTACAAGATGGCCGAGGGTGGGTATTCGGAGATTGGAAGACAGGTGACTGGTGATGGCGATGGGTGCGAGAGGGACAGCAAAGCGGACGTGTTGAGTGAAGGAAGGAGCGAGGGAGAGGCTCCATTAAACATCTGCGCGGATGAGCGCATGCCGCCGCGCGGTGAGCTCAGTGGTCAGGAGAGCAATGGGGATATGGAATCAGCTTGGAATGGGATGTACCCCGAGGTGGCGCCTCCAGAGTCCTACGACCTGATGGCCCGCGAGAGCTGGATCTCGGACGGGTCAGACATAGACATCGGGGAGAAAAGGGAGACTTTAGAGGAAGATATTCAATATCCAAAATCCCGGACGTATACTTGCGCACAATGCAGCCTGAAGTTCCCGACGCCCAAGGAGTTGCGCGCTCACCGTGCGCAGGCGCATGCCGCACCTGCCAAAACTTCATACAGCCGCATGATCACAGCACGGACcatcaagaaagaagagaagaCGGATGACAACATGATGGGATGCACAATAATAGACTCGAAAGAATCAATCACGTCAACAATACTGCAAGTGTACGATATGGAGGAGTCGAAGACCAACATCGAGAGCATCATCAAGCAGGAAGTCAAGCGGAGGAGGAAGGACTTCGTGTGTCCCACATGCAAAGTGGACCAACTCACCGACGCGGCATTTCACGCACATCTAAAGATACATCCACTGGAGTGCCTCACGTGTGGAAAgtgtttttacagaagggccAACCTCGCGCTGCATATAAAAACGCATTTAGGTATTAAAAATTACAAGTGCGAGGTGTGCGAGAAGCGTTTCATAACGCGGCAGAAGCTGTCGGAGCACCAGAACGTGCACACCGGCCGCGCGCCCGTCAAGTGCACCGTCTGCGACGACACCTTCCGCAGATACTCCAACATGGTGCAGCACAGGGACCGCCATCACTTCGGCAAGCGGGCCCGCGTGCGCGACTTCGTGTGCCAGTGCGGCGCCGTGTTCCACTCGCGCGCCAAGCTGCACTGGCACCAGGAGACGCACGAGGCGCGCCCCAAGGCCTGCCTCTACTGCAGCGACAAGTTCGTGCACGCCGCCTCGCTCACCAGGCACGTGCGCCGCACGCACAACGAGTACTACGTGGCGCCGCGCACCAGGCGGCCGGACCGCCCGGACCGGCCGGACCGACCGGATCGACCCGCGCCGGACAACGTGCCCTGCCCCGTCTGCAAGCAGATATATCTACGAACAAACCTGCGCTCCCATCTACAAACGCACAGCGGGAAGCGTCCGTACGTATGCGTCGTGTGCAACAAGGGATTCACCACCAAATGGAACCTCAAACTGCACCGTTGGACCCACATGAGCCGCTCATCAAAGCCGTACAAATGCCATCTCTGTAAAGGCGCTTTCATCCGACAGACTGAGTACATATCGCATATGAACGCGCACAAGTCGGTCAGGCCTTACACATGTAACTACTGCGGCTGTCAGTTCATAAGGAAGTACAACTGTCAGAGGCACGTGAGAGAGCACGAGATGGCGAAGAAATACGTGTGCAAAGTGCCGGAGTGTGGGAAATCGTTCCACAGGAGTTATTACTTGTCGGAGCATATGAAGGTGCACAGCGGCGCGCGGCCGTTCGCATGCAACATATGCGGTAAGACGTCTAGCAATAAATCTAATCATAATAAACATGTTAAGATACATCACGCTCGCGAGCCGGTCGCTACTGAAGCGTAA
- Protein Sequence
- MDHTQVQCPVCTLYLRNGMTLESHLDTHPKDQVIKALCCLTTKGSNYGSRTSTPLHSERSFRSRSRTPAADDRWNGSHQSSEHDRYWRRPSSRTPKTTPVTSVSGSGTPEIRMAEMQYEGGSMTSGQHSLPPYPMKSDKTPTYQNTPMSDFDPSYSFYQDQQEDREIKFSRSAEYSAMDNSNVFTYNMPAVTTGVRFQANNSLLPTISKKPDFVKILPKPNNIVVKTNVGGVQYITSGVKPLHVMMPPNPAFVPKNIHNNMIMPGSTHPSVNIEKGPSQLNTNPFNIMPGSLAPAMSTVMTQNSQIIYREMVHNVDGKPFISSVPAVMTTGSAATLAQAGPLYQNVMVVDQFGSCMYTTPQQLLPKSCTTSIYSESGSLVTGSHMNKSPVPNDPKTLVIEVGPIISSQSASPCTTSTSTAISTPETIIKTDKDSISVKSDVRSDASSSTKGLKILSNIKVEVPVQHNKNMVNTIMDLTESNDQEYPEEEMNIPKSEKNLPKTNHKSDNCTPRPSSSSNDSVVSHSFSVIKNVGNPPSYKSSSSKTLDSKIDTEYGDSCPVPDLICNEKPSISPCSELSENGENSTDLTLLSPKLSHDREIKNNLTVENKAQVAVKPYRLNALRLNNLYVKKNKKILQIKNAKQFGTSSTSSMDMEPIPSSSRLPEDYSIKKHMERDEVIEHSTLQTVSVEEIKDNDENGFDADTEEHSMDMEPPPMPTINSTTEFTTTVDMVHVKEEISTSNESAFSNATPDRVLTPMETLRPVNVITYGNLPADNFDEESSHRELMNIEAASKNKQFVSIMNESYFGENLYADYFAQDRQEPFENRQPPKEPLYGMWGESSQKDNEFVLPSFIHDNYKMAEGGYSEIGRQVTGDGDGCERDSKADVLSEGRSEGEAPLNICADERMPPRGELSGQESNGDMESAWNGMYPEVAPPESYDLMARESWISDGSDIDIGEKRETLEEDIQYPKSRTYTCAQCSLKFPTPKELRAHRAQAHAAPAKTSYSRMITARTIKKEEKTDDNMMGCTIIDSKESITSTILQVYDMEESKTNIESIIKQEVKRRRKDFVCPTCKVDQLTDAAFHAHLKIHPLECLTCGKCFYRRANLALHIKTHLGIKNYKCEVCEKRFITRQKLSEHQNVHTGRAPVKCTVCDDTFRRYSNMVQHRDRHHFGKRARVRDFVCQCGAVFHSRAKLHWHQETHEARPKACLYCSDKFVHAASLTRHVRRTHNEYYVAPRTRRPDRPDRPDRPDRPAPDNVPCPVCKQIYLRTNLRSHLQTHSGKRPYVCVVCNKGFTTKWNLKLHRWTHMSRSSKPYKCHLCKGAFIRQTEYISHMNAHKSVRPYTCNYCGCQFIRKYNCQRHVREHEMAKKYVCKVPECGKSFHRSYYLSEHMKVHSGARPFACNICGKTSSNKSNHNKHVKIHHAREPVATEA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00859741;
- 90% Identity
- -
- 80% Identity
- -